mRNA_H-paniculata_contig26203.7159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26203.7159.1
Unique NamemRNA_H-paniculata_contig26203.7159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 7.740e-32
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            +ANPECVDCGA+ PDW+SI+L VMMCIECSGIHRSMGVHVSKVRSLTLDRWT+PL++LL ++GN  AN+V
Sbjct:  442 EANPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTTPLVELLLKAGNHNANEV 511
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.290e-31
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    4 ANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            ANPECVDCGA+ PDW+SI+L VMMCIECSGIHRSMGVHVSKVRSLTLDRWT+PL++LL  +GN  AN+V
Sbjct:  703 ANPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTTPLVELLREAGNHNANEV 771
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.750e-26
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWT-SPLLDLLERSGNEKANQV 210
            +ANP+CVDCGA +PDWASISL V+MCIECSGIHRSMGVH+SKVRSL LDRWT S LL L+E  GN   N V
Sbjct:  932 KANPQCVDCGAATPDWASISLGVLMCIECSGIHRSMGVHISKVRSLMLDRWTPSLLLQLMESVGNTTFNAV 1002
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A7S4NQS6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NQS6_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 9.210e-25
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQVRVNKP 225
            ++N ECVDC A +PDWASI+  V++C ECSG+HRS+G H+SK+RSLTLD+W   +L +L+  GN K N+V  + P
Sbjct:    3 ESNKECVDCNAPNPDWASINYGVLVCHECSGVHRSLGTHISKIRSLTLDKWEPQMLQILKHLGNSKVNEVLESNP 77
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: F0ZMR2_DICPU (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMR2_DICPU)

HSP 1 Score: 97.8 bits (242), Expect = 1.660e-24
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            + N  CVDCGAK+P W S +L + +C+ CSGIHRS+GVH+SKVRS+TLD+W   LL+ ++  GN KANQ+
Sbjct:   25 EENRYCVDCGAKNPRWCSTNLGIFICMRCSGIHRSLGVHISKVRSVTLDKWNFDLLEQMQNMGNRKANQI 94
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: UPI0009E57880 (ADP-ribosylation factor GTPase-activating protein AGD3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E57880)

HSP 1 Score: 102 bits (253), Expect = 1.620e-23
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            + N  C DC A  PDWASI+L +++CIECSGIHRS+GVHVSKVRSLTLD+W  P +  +E  GN+K N++
Sbjct:  551 EGNSYCADCSAPRPDWASINLGILVCIECSGIHRSLGVHVSKVRSLTLDKWEEPTVKFMEAMGNDKVNRI 620
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A8J5XLG9_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLG9_DIALT)

HSP 1 Score: 101 bits (252), Expect = 2.220e-23
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    7 NPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQVRVNKPM 228
            N  C DC   SPDWA+I+  V++CIECSGIHRS+GVHVSKVRSLTLD W S LL L+   GN +ANQ+  ++P+
Sbjct:  407 NLACADCAGPSPDWAAINWGVLLCIECSGIHRSLGVHVSKVRSLTLDTWDSGLLQLMRNIGNGRANQLLEHRPL 480
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A7S1ZFW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFW7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.040e-23
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    4 ANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            ANP C DCGA SPDWASI+L V++CIECSG+HRS+GVHVSKVRS+ LD  + P   LL   GNEKAN++
Sbjct:  706 ANPICADCGAPSPDWASINLGVLLCIECSGVHRSLGVHVSKVRSVRLDELSEPEARLLLALGNEKANRI 774
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: A0A2R5GGS8_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGS8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.080e-23
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            +AN  C DCGA  PDWASI+L V++CIECSGIHRS+GVHVSKVRS+TLD WT     +LE  GNE  N +
Sbjct: 1210 EANTTCADCGAAQPDWASINLGVLVCIECSGIHRSLGVHVSKVRSMTLDSWTDASKAVLEALGNEAVNAI 1279
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BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Match: W7T4W5_9STRA (Ankyrin repeat-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4W5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.260e-23
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDRWTSPLLDLLERSGNEKANQV 210
            +ANP C DC    PDWAS+S   +MCIECSGIHRS+GVHVSKVRSL LD W   L +++E  GN +ANQV
Sbjct:   85 EANPVCADCQRPEPDWASVSFGTVMCIECSGIHRSLGVHVSKVRSLLLDAWPRSLREVMEAMGNLRANQV 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26203.7159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG0_ECTSI7.740e-3278.57Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A6H5L2J8_9PHAE1.290e-3179.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCL2_9STRA1.750e-2674.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4NQS6_9EUKA9.210e-2554.67Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
F0ZMR2_DICPU1.660e-2457.14Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
UPI0009E578801.620e-2360.00ADP-ribosylation factor GTPase-activating protein ... [more]
A0A8J5XLG9_DIALT2.220e-2360.81Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
A0A7S1ZFW7_9STRA3.040e-2366.67Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A2R5GGS8_9STRA3.080e-2364.29Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
W7T4W5_9STRA3.260e-2362.86Ankyrin repeat-containing protein n=1 Tax=Nannochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26203contigH-paniculata_contig26203:1831..3384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.1e-27
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.1409523-CDS-H-paniculata_contig26203:1830..19561622929783.1409523-CDS-H-paniculata_contig26203:1830..1956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26203 1831..1956 +
1691481008.6652946-CDS-H-paniculata_contig26203:1830..19561691481008.6652946-CDS-H-paniculata_contig26203:1830..1956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26203 1831..1956 +
1622929783.1526763-CDS-H-paniculata_contig26203:3279..33841622929783.1526763-CDS-H-paniculata_contig26203:3279..3384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26203 3280..3384 +
1691481008.6779215-CDS-H-paniculata_contig26203:3279..33841691481008.6779215-CDS-H-paniculata_contig26203:3279..3384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26203 3280..3384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26203.7159.1prot_H-paniculata_contig26203.7159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26203 1831..3384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26203.7159.1

>prot_H-paniculata_contig26203.7159.1 ID=prot_H-paniculata_contig26203.7159.1|Name=mRNA_H-paniculata_contig26203.7159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
QANPECVDCGAKSPDWASISLAVMMCIECSGIHRSMGVHVSKVRSLTLDR
WTSPLLDLLERSGNEKANQVRVNKPM*
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mRNA from alignment at H-paniculata_contig26203:1831..3384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26203.7159.1 ID=mRNA_H-paniculata_contig26203.7159.1|Name=mRNA_H-paniculata_contig26203.7159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig26203:1831..3384+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCAACCCGGAGTGCGTGGACTGCGGTGCGAAGAGCCCAGACTGGGC
CAGCATTAGCCTGGCGGTCATGATGTGCATCGAGTGCTCAGGGATTCACC
GCTCTATGGGGGTTCATGTCTCCAAGGTTAGTGCCAGAGTATGGGACAGC
GCGAACTTCCGGTCGATGGCTTGCTGTCGGAAGGCACCCGAGGCGTCGAC
GGCATCGACGGTCCTGTAGCCCAACGCAAGGGGCGGGGGCCCTCCGGATA
GTATTTTTTTTTTAACGCGCCCTTCATTTTGCACCAAATCGAACGTAATT
TCGCCCCTTCTTTACTAATATCCCAAAATGCAAATATGTAAAAATTATGT
GTGATTTTGAGTGTGTGCCCAAAAAAAAGGAACTGGAAAATCGCCTCTAT
GACGAAAGAAAATCATTTTGGAATAATATTATTCGTCCGAGTGAAGAGAA
ATTTACCCCGCCGATTTTCGTTCAAGGCGACAGAAATGAATATGCCTGGG
ACGGGCATTATTTTGCTCAGGTGGCGAAAAAAAATGCGGCGTAATGTACG
TCACAGTGCCGGCAGAAGCGTCTTTTTTGGCGATTTTTTTTTAGGGCCCG
CGGGAGAAAATAGCCCTGGGTTATACATTTGCACATACAGCCGGCGAACA
GCCCACTCATGTTGCCTTTTGGTTTTCGGCTATCATATGCACATGATGTC
AACATCCATTGTAAGTGTACTTGTACTAGAGGTGCAATGAAGAGGTGACG
TATAATCACCGTATCTTCTGTTTATTTTGAACACTGTTGAAACCCAGTCT
TATCTAGAGCGAAATATCGATTTTCACCAAGTCTTATTTTACTGGCTAGA
ATATTTGGCCGTATTCGATATTTTGGATGTCATCGAAAAAAGTCTTTTTG
TCCTGGAGATGTCGAGGTAAATTCCAACTTTTTGCCGAATAGCTGAGGCT
AGGCCAGCAGAGTGTATGTATTAAATCGTGATTTTAGGCTAAAATAATGA
TGAACACACTCAAAAATGAGATAAATGTGTTCTTATCCATGTATACTTTT
GTTGCTACAACGTGGTATAATTGATAGAAGCTCACCCCAAGCGTACATGT
TGTACTGGAGTCCTCAGGGCTTATCTTGCAGACGGTAGCCCATTAGTCAC
CAGTATGTCGTCTGCCACGTCCGTTACACACGCGAGTGATATATTTTTAC
TCCGTGAGTGGTAGATGTAGCGCTCTACGCGCGGTCTCCGGAGAACGCAA
CAAGATGGGGTACTTTACCATGAACCTGGCGAATCCTGTCACCATGTTAT
GATTTGGACGTCGATCTAGATTTCCCCCTCCATTGATTCAATTTGTGGAT
ATGTAATTCAGCAGCTGAAAGATGCTGAGTGTATACCTCCGTTTTCTTTT
ACGGTTACCTCCCCCCATCCATATGCATACCCGCCCCACTTTGTCACAGG
TACGGTCACTGACGCTAGATCGATGGACGAGTCCTCTGCTGGACTTACTA
GAGAGGTCGGGGAACGAAAAAGCCAACCAGGTGAGAGTAAATAAACCCAT
GTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26203:1831..3384+

>mRNA_H-paniculata_contig26203.7159.1 ID=mRNA_H-paniculata_contig26203.7159.1|Name=mRNA_H-paniculata_contig26203.7159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig26203:1831..3384+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCAACCCGGAGTGCGTGGACTGCGGTGCGAAGAGCCCAGACTGGGC
CAGCATTAGCCTGGCGGTCATGATGTGCATCGAGTGCTCAGGGATTCACC
GCTCTATGGGGGTTCATGTCTCCAAGCAGGCCAACCCGGAGTGCGTGGAC
TGCGGTGCGAAGAGCCCAGACTGGGCCAGCATTAGCCTGGCGGTCATGAT
GTGCATCGAGTGCTCAGGGATTCACCGCTCTATGGGGGTTCATGTCTCCA
AGGTACGGTCACTGACGCTAGATCGATGGACGAGTCCTCTGCTGGACTTA
CTAGAGAGGTCGGGGAACGAAAAAGCCAACCAGGTGAGAGTAAATAAACC
CATGTAGGTACGGTCACTGACGCTAGATCGATGGACGAGTCCTCTGCTGG
ACTTACTAGAGAGGTCGGGGAACGAAAAAGCCAACCAGGTGAGAGTAAAT
AAACCCATGTAG
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