mRNA_H-paniculata_contig2617.7149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2617.7149.1
Unique NamemRNA_H-paniculata_contig2617.7149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2617.7149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2617contigH-paniculata_contig2617:7679..9574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size701
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2617.7149.1prot_H-paniculata_contig2617.7149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2617 7951..9574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.0028331-UTR-H-paniculata_contig2617:7678..79501622929782.0028331-UTR-H-paniculata_contig2617:7678..7950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2617 7679..7950 +
1691481008.1876707-UTR-H-paniculata_contig2617:7678..79501691481008.1876707-UTR-H-paniculata_contig2617:7678..7950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2617 7679..7950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.018462-CDS-H-paniculata_contig2617:7950..81841622929782.018462-CDS-H-paniculata_contig2617:7950..8184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2617 7951..8184 +
1691481008.1966014-CDS-H-paniculata_contig2617:7950..81841691481008.1966014-CDS-H-paniculata_contig2617:7950..8184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2617 7951..8184 +
1622929782.0499878-CDS-H-paniculata_contig2617:9379..95741622929782.0499878-CDS-H-paniculata_contig2617:9379..9574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2617 9380..9574 +
1691481008.2047706-CDS-H-paniculata_contig2617:9379..95741691481008.2047706-CDS-H-paniculata_contig2617:9379..9574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2617 9380..9574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2617.7149.1

>prot_H-paniculata_contig2617.7149.1 ID=prot_H-paniculata_contig2617.7149.1|Name=mRNA_H-paniculata_contig2617.7149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MVTSELQGKQAHVQRRTSFTPTRDRRKRRSWLAAIGQGRSPASTRRRERD
AFGRSKSPTAGKRFDVDSLSFSGLERQQSPKSPRSPSTTGDRTSPRLWSP
SGNPLCSPQEKRGSRRAGRAKAMPTAKKTSLSPARTVDESSPV
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mRNA from alignment at H-paniculata_contig2617:7679..9574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2617.7149.1 ID=mRNA_H-paniculata_contig2617.7149.1|Name=mRNA_H-paniculata_contig2617.7149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig2617:7679..9574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATCACCAAGCTGGAAGTCGGAGACACGAAAGGCCCACACAACAAGCGC
ACTCCGTACATGGAGAACTAAGAACAACTGCCTCATTAGATTTCGACTAC
TGAATGTTTGAGAATTGAGGGACGCTCTACCGTGCAAACAGTCAATTGAG
TGTCAACAAGGCAGTAGGGACGTGACACTCGTTTACAGCAACTACTCTCT
GGCCTCTCTCTAGGTCGACGTACGTCTGTACATCGGGCAGAGCAGAGAGA
TAATCGACCACAGACAAAAGTCATGGTCACCAGCGAGCTGCAGGGAAAAC
AGGCACATGTACAGAGGAGGACCAGCTTTACTCCGACTCGAGACCGGCGC
AAGCGAAGGAGTTGGCTTGCTGCGATCGGGCAAGGACGCAGCCCGGCTTC
GACAAGGAGGCGCGAAAGAGATGCCTTCGGTCGGAGCAAAAGCCCAACGG
CCGGGAAGCGATTTGACGTGGATTCATTGAGCTTTTCGGGGCTGGAGCGA
CAGCAGGTATGTATCGTGCGGACAAGTGCTGTGGGGGGTATTTAGTCTCG
ATCGCACGTAATGATACCATAAAGAACATGGGGAATTGGGAGCTTGTGGC
AGCACCGGGAAAGCTTTGTTTCAGCTTGCGTTTTACTGCTGTGGTTGGAA
TTATGACAGTGTATGACATGCGCGGTCATGTATCTCACGATGCAATCATT
TATTGATCTTTTTTGTGTCAAGAAACATCAAAAACGATACCGTACAAACG
GTTATGTCTGTGCTGTCTGGACGAATAGTCAGTACAAAATTTGCAACGAG
TGGATAGCACCCTGCAGTAGTCCCTGTATCGATACTTTTTGCCCTCGTCC
TGGTTTTCAATTGCTGCCGAGAAGTGGAATTTTTCGCTGGTTGTACGATT
GTGTAGTGGCTGTTTAATCTGGGGTGTTTGAACGTTTGGGTAACGTCGGG
GCTGAACGCGGGCAAACGTATGCCCACCGAGACATATAAATTCCAACCTT
GAGGTTTTCCGTCACGCGCAGGCACAAATCGCTTTGTATTAATGGAAAAG
GCACACAAAACTCGTGGTAGCAATGTACCCTGTTCACCGTACCTCGTTCA
CTTCTGAACGTCGTGAGAGGTTCTGTCAGCCACCCACCAGTACGTCGTTA
CTTTGATACTAATGAGTTATCTCGAAACCATGGATCTTTGGTGACTATGT
AAGTAGACATGAAGCTCTGTACCTACCGTACTGTACTGCACTGTTTTTTT
TCCCACGAGTGTTGGAAGTGTTCGCTATTGGCACCTCGAGCCTCGCTCCT
GGGGAGCTTTTGTCTTCATTGTGGTCTTTGTCTACTCGGATTTACGACGG
ATGGGAAAGAAGCTCGGTCAATATCAACACTATGAACCCTGCTTGCACTA
GTGAGGCGCTTGGGTACTTGGCTTGGTTTTAGCGGTGACCCCTACTGTCG
TCTGTATTGTAGTGGTTGTACCACAGGTACTGCATCTTTCAGCGGTCCGA
ATTTCGCAAAGTTGAACTTGCAGCAAACAGAGCTTACAACGGAACCACTG
GCAGTAGGTCAATTTGCAACTTTTCCCACTGTCGTTGCTGTAGAATATTC
CAGGTTGCCATTCTGCAACTTCACAGGATTAATTCATACCACCAGCCCAT
CCATCCTCTTGATCCCCCCACTTTGCTCCGGCGCCACCTTGACGATCAAA
GAGTCCCAAGTCCCCGAGATCCCCTTCCACGACCGGCGATCGCACTAGCC
CTCGGCTATGGTCCCCCTCCGGGAACCCACTGTGTTCCCCTCAAGAGAAG
AGAGGGTCACGCAGAGCTGGGCGAGCGAAGGCGATGCCCACCGCTAAAAA
GACCTCACTATCTCCTGCCAGGACGGTCGACGAGAGCAGCCCCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2617:7679..9574+

>mRNA_H-paniculata_contig2617.7149.1 ID=mRNA_H-paniculata_contig2617.7149.1|Name=mRNA_H-paniculata_contig2617.7149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig2617:7679..9574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACCAGCGAGCTGCAGGGAAAACAGGCACATGTACAGAGGAGGAC
CAGCTTTACTCCGACTCGAGACCGGCGCAAGCGAAGGAGTTGGCTTGCTG
CGATCGGGCAAGGACGCAGCCCGGCTTCGACAAGGAGGCGCGAAAGAGAT
GCCTTCGGTCGGAGCAAAAGCCCAACGGCCGGGAAGCGATTTGACGTGGA
TTCATTGAGCTTTTCGGGGCTGGAGCGACAGCAGATGGTCACCAGCGAGC
TGCAGGGAAAACAGGCACATGTACAGAGGAGGACCAGCTTTACTCCGACT
CGAGACCGGCGCAAGCGAAGGAGTTGGCTTGCTGCGATCGGGCAAGGACG
CAGCCCGGCTTCGACAAGGAGGCGCGAAAGAGATGCCTTCGGTCGGAGCA
AAAGCCCAACGGCCGGGAAGCGATTTGACGTGGATTCATTGAGCTTTTCG
GGGCTGGAGCGACAGCAGAGTCCCAAGTCCCCGAGATCCCCTTCCACGAC
CGGCGATCGCACTAGCCCTCGGCTATGGTCCCCCTCCGGGAACCCACTGT
GTTCCCCTCAAGAGAAGAGAGGGTCACGCAGAGCTGGGCGAGCGAAGGCG
ATGCCCACCGCTAAAAAGACCTCACTATCTCCTGCCAGGACGGTCGACGA
GAGCAGCCCCGTCAGTCCCAAGTCCCCGAGATCCCCTTCCACGACCGGCG
ATCGCACTAGCCCTCGGCTATGGTCCCCCTCCGGGAACCCACTGTGTTCC
CCTCAAGAGAAGAGAGGGTCACGCAGAGCTGGGCGAGCGAAGGCGATGCC
CACCGCTAAAAAGACCTCACTATCTCCTGCCAGGACGGTCGACGAGAGCA
GCCCCGTC
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