mRNA_H-paniculata_contig26164.7147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26164.7147.1
Unique NamemRNA_H-paniculata_contig26164.7147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26164.7147.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.240e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MTNVTSKKCLGEGCTKRPNYGNPGSKKANYCARHAESGMI 120
            M +V SK+C   GCTKRP+YGN GSKKA  CA+HA  GM+
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_H-paniculata_contig26164.7147.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.760e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 MTNVTSKKCLGEGCTKRPNYGNPGSKKANYCARHAESGMIDV 126
            M +V +K C   GCT R N+G PGSKKA +C+RHAE GM+D+
Sbjct:    1 MIHVRAKTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
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BLAST of mRNA_H-paniculata_contig26164.7147.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.800e-5
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 MTNVTSKKCLGEGCTKRPNYGNPGSKKANYCARHAESGM 117
            M +V +++C   GCTKRP++G  GSKK  +CA+HA  GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26164.7147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI8.240e-862.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCH9_ECTSI5.760e-757.14EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI1.800e-551.28EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26164contigH-paniculata_contig26164:1649..1984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.7435243-CDS-H-paniculata_contig26164:1648..19841622929781.7435243-CDS-H-paniculata_contig26164:1648..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26164 1649..1984 +
1691481008.1025958-CDS-H-paniculata_contig26164:1648..19841691481008.1025958-CDS-H-paniculata_contig26164:1648..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26164 1649..1984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26164.7147.1prot_H-paniculata_contig26164.7147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26164 1649..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26164.7147.1

>prot_H-paniculata_contig26164.7147.1 ID=prot_H-paniculata_contig26164.7147.1|Name=mRNA_H-paniculata_contig26164.7147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MTNVTSKKCLGEGCTKRPNYGNPGSKKANYCARHAESGMIDVVNKRCKQE
GCNKHPSFGMDGSRKAEFCAQHATEGMVNVVNKRCEYDGCAKQSQYGVPG
GKKPVFCAEHVQ
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mRNA from alignment at H-paniculata_contig26164:1649..1984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26164.7147.1 ID=mRNA_H-paniculata_contig26164.7147.1|Name=mRNA_H-paniculata_contig26164.7147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig26164:1649..1984+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAATGTCACCAGCAAGAAATGCCTCGGGGAGGGCTGCACCAAGCG
CCCGAACTACGGCAATCCTGGCAGCAAAAAGGCGAACTACTGCGCCCGGC
ACGCGGAGTCCGGCATGATCGATGTGGTGAATAAGCGCTGCAAGCAGGAA
GGGTGTAACAAGCACCCATCTTTCGGCATGGACGGCAGCAGGAAGGCCGA
GTTCTGCGCCCAGCATGCAACGGAGGGTATGGTAAATGTGGTGAATAAGC
GCTGCGAGTATGATGGGTGCGCCAAGCAGTCGCAGTATGGTGTTCCCGGG
GGGAAAAAGCCGGTGTTCTGCGCGGAGCACGTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26164:1649..1984+

>mRNA_H-paniculata_contig26164.7147.1 ID=mRNA_H-paniculata_contig26164.7147.1|Name=mRNA_H-paniculata_contig26164.7147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig26164:1649..1984+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAATGTCACCAGCAAGAAATGCCTCGGGGAGGGCTGCACCAAGCG
CCCGAACTACGGCAATCCTGGCAGCAAAAAGGCGAACTACTGCGCCCGGC
ACGCGGAGTCCGGCATGATCGATGTGGTGAATAAGCGCTGCAAGCAGGAA
GGGTGTAACAAGCACCCATCTTTCGGCATGGACGGCAGCAGGAAGGCCGA
GTTCTGCGCCCAGCATGCAACGGAGGGTATGGTAAATGTGGTGAATAAGC
GCTGCGAGTATGATGGGTGCGCCAAGCAGTCGCAGTATGGTGTTCCCGGG
GGGAAAAAGCCGGTGTTCTGCGCGGAGCACGTGCAGATGACCAATGTCAC
CAGCAAGAAATGCCTCGGGGAGGGCTGCACCAAGCGCCCGAACTACGGCA
ATCCTGGCAGCAAAAAGGCGAACTACTGCGCCCGGCACGCGGAGTCCGGC
ATGATCGATGTGGTGAATAAGCGCTGCAAGCAGGAAGGGTGTAACAAGCA
CCCATCTTTCGGCATGGACGGCAGCAGGAAGGCCGAGTTCTGCGCCCAGC
ATGCAACGGAGGGTATGGTAAATGTGGTGAATAAGCGCTGCGAGTATGAT
GGGTGCGCCAAGCAGTCGCAGTATGGTGTTCCCGGGGGGAAAAAGCCGGT
GTTCTGCGCGGAGCACGTGCAG
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