mRNA_H-paniculata_contig2613.7141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2613.7141.1
Unique NamemRNA_H-paniculata_contig2613.7141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: D7FUY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.440e-52
Identity = 103/209 (49.28%), Postives = 136/209 (65.07%), Query Frame = 3 
Query:  438 VRSAAEAKRDLLGLLSSPVTDP--DDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDEGITGRLEVACSYELDPRGRMIASLTGHRLLPDGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVR-----MEGRLNIFLRDVSVLASSSPA 1043
            V S  EAK +LLG +  P   P  +      A + Y +E LE  Y PI T+ FFN A++G+W LAY++A + P+GPRL   + FQ + P EG KGN TN++ W + DEGI GRLEV C Y  DPRGRM  SL  H LLPDG MPRD + LV+ L++AMP+ELFDP+  A+ET++LDD+LRIV+      EG +NIF R  +   S++ A
Sbjct:   33 VGSIEEAKTELLGRVGFPTEHPGAERPRLEEARVGYLVEVLEGTYKPIHTVGFFNFAAQGEWDLAYTSAAMVPIGPRLTAHQQFQRIEPGEGLKGNLTNIITWTLKDEGIDGRLEVMCDYSFDPRGRMNTSLRKHLLLPDG-MPRDPQELVRVLRRAMPYELFDPDDHAMETTFLDDTLRIVKHRGPKFEGLVNIFARRATAKDSTTDA 240
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: K0TAS2_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAS2_THAOC)

HSP 1 Score: 112 bits (280), Expect = 3.130e-24
Identity = 73/204 (35.78%), Postives = 108/204 (52.94%), Query Frame = 3 
Query:  444 SAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDEG----ITGRLEVACSYELDPRGRMIASLTGHRLLP--DGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRM-----EGRLNIFLRDVSV 1022
            +A EAKR+L+ L+S      ++   + A+  + +  LEA Y+ +QT+ F N+A  G W L +S   +     +L   E+ Q V PD+   G  TN+  W   + G     +G     C+Y ++   RM+  L  H L P     +P DV  LV  L +AMP ELFDP+  AL+T+YLD  +RIVR+     EG  NIF+R  S+
Sbjct:   37 TADEAKRELVDLISRIQGSEEE---YRAIQDH-INFLEAEYVAVQTLDFLNMAIAGDWQLLFSTNLLGRPARKLRLREMIQRVEPDK-LNGTLTNIASWDYAETGEQFDSSGNFSAVCTYSINQGARMVVDLKDHELRPAKGSSIPSDVPGLVGLLHRAMPKELFDPSAHALDTTYLDADIRIVRLTGPQHEGVRNIFMRKGSI 235
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A1Z5JQY1_FISSO (PAP_fibrillin domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQY1_FISSO)

HSP 1 Score: 110 bits (276), Expect = 1.890e-23
Identity = 77/202 (38.12%), Postives = 107/202 (52.97%), Query Frame = 3 
Query:  444 SAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYS-NAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDEG-----ITGRLEVACSYELDPRGRMIASLTGHRLLP--DGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVR-----MEGRLNIFLR 1010
            S A++K  LL LL       ++  T  AL+     NLEA Y P QT+ F NL  +G+W L +S N    P   +    ELFQ +   +  +G   N   W + ++G      +G   V CSY+++   RMI SL  H L P    K+P+DV  LV  L +AMP E+FDP   A++T+YLD  LRIVR     +EG  +IF+R
Sbjct:   57 SVAQSKEKLLDLLPRMTGKEEEFRTVEALV----NNLEANYQPAQTLDFLNLILQGEWQLLFSTNLSGTPNPAKFRLRELFQRIERHK-LEGKLINEATWDLAEQGDGNFECSGTFTVDCSYKINQGARMILSLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIVRHTGPRLEGVRDIFIR 253
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: B8BYW6_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYW6_THAPS)

HSP 1 Score: 116 bits (290), Expect = 2.910e-23
Identity = 82/220 (37.27%), Postives = 119/220 (54.09%), Query Frame = 3 
Query:  399 AEVSADVQQVGTPVRSAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYS-NAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDE----GITGRLEVACSYELDPRGRMIASLTGHRLLP--DGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRM-----EGRLNIFLRDVSV 1022
            AE +A   +      SA EAK+ L+ L+     + ++   + A+ +Y +  LE  Y+P+QTI F NLA  G+W L +S N  V+P   +L   EL Q++    G  G+ TN+  W   ++      TG   V CSY ++   RM+  L  H L P    K+P DV  LV  L +A+P E+FDPN  A++T+YLD  LRIVR+     EG  NIF+R  S+
Sbjct:  460 AERAAPANEQTISALSAEEAKQALIELIPRMTGNEEE---YRAVESY-VNLLEEKYMPVQTIDFLNLAMTGEWQLLFSTNLMVRP-NRKLRLRELVQKIE-SNGFNGSVTNMAQWDFAEDEETFDATGNFNVKCSYTINQGARMVVDLDDHELRPAKGSKIPSDVPALVGLLHRAIPKEMFDPNGHAMDTTYLDADLRIVRLTGPNHEGVRNIFIRKGSI 673
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A7S2XQJ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQJ7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.210e-22
Identity = 71/172 (41.28%), Postives = 97/172 (56.40%), Query Frame = 3 
Query:  552 LEAGYIPIQTIPFFNLASKGKWHLAYS---NAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVID-EG----ITGRLEVACSYELDPRGRMIASLTGHRLLP--DGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRM-----EGRLNIFLRDVSV 1022
            LEA Y P  T+ FFNLA  G+W L +S   +  VQ    ++   EL Q ++P +   G  TN+  W + + EG    +TG   V C YE++   RM   L  H L P    K+P+DV+ LV  L +AMP ELFDPN + ++T+YLD  L+IVR+     EG  NIF+R  SV
Sbjct:  136 LEADYEPALTLDFFNLAMGGEWQLLFSTNLSGSVQ----KIRLRELIQRIDPKQ-LDGTITNIATWDLSEGEGGVFDVTGTFSVKCDYEIEQGSRMKVELKDHLLEPARGSKIPQDVQGLVGLLHRAMPTELFDPNDVNIDTTYLDADLKIVRLTGSRYEGIRNIFIRRNSV 302
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: B7G6D7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6D7_PHATC)

HSP 1 Score: 107 bits (266), Expect = 6.330e-22
Identity = 77/203 (37.93%), Postives = 104/203 (51.23%), Query Frame = 3 
Query:  441 RSAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYS-NAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDEG-----ITGRLEVACSYELDPRGRMIASLTGHRLLP--DGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVR-----MEGRLNIFLR 1010
            +SAAE K +LL LL S     D+      L+      LEA Y P QT+ F NLA +G W L +S N    P   +    EL Q +  +    G  TN  +W + + G      TG   V C+Y ++   RMI  L  H L P     +P+DV+ LV  L +AMP  LFDP+  A++T+YLD  LRIVR     +EG  +IF+R
Sbjct:   74 KSAAEIKGELLELLPSMTGQEDEFRRVEELV----NALEARYQPAQTLTFLNLAMQGSWQLLFSTNLSGTPNPAKFRLRELTQRIECNN-LDGVVTNQALWDLAEAGDAAFDATGTFSVKCNYSINQGARMIVDLEDHLLQPARGSAIPQDVQGLVGYLHRAMPKTLFDPSDHAMDTTYLDVDLRIVRYTGARLEGSRDIFMR 271
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A7S0AIY2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIY2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.250e-21
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = 3 
Query:  552 LEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDE--GI---TGRLEVACSYELDPRGRMIASLTGH--RLLPDGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRM-----EGRLNIFLRDVSVLAS 1031
            LE  Y+P+QT+ F NLA  G W + +S   +     +L   EL Q ++  +   G  TN+  W + +E  G+   +G   V C Y ++   RM   L  H   L    ++P DVE LV  L  AMP E+FDPN+LA++T+YLD+ +R+VR+     EG  N+F+R  +V  S
Sbjct:   48 LEDKYVPVQTLDFLNLAMGGDWQMLFSTNRLGIPNTKLRLRELVQRID-TKNLDGTVTNMARWDLAEEVPGVFDCSGTFSVKCDYGINQGARMNIDLKDHVLELARGSRVPTDVEGLVGMLSGAMPSEMFDPNELAMDTTYLDEKIRVVRLTGSRLEGVRNVFIRSGAVEVS 218
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A448ZFM7_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFM7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.840e-20
Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 3 
Query:  453 EAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDEGIT----------GRLEVACSYELDPRGRMIASLTGH--RLLPDGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRMEGRLNIFLRDVSVLASS 1034
            E K+ LL LL      P++   +  + +Y +  LE  Y P+QT+ F NLA  G+W L +S      +       ELFQ +  +    G   N   W + ++             G+  + CSY ++   RM+  L  H   L    K+P+D E LV  L +A+P ELFDPN  A++T+YLD  LRIVRM G     +RD+ +   S
Sbjct:  100 EIKKRLLDLLPRMKGTPEE---YNMVESY-VNTLEDRYTPVQTLDFLNLAMSGEWQLLFSTNLGGSMRMNFRLSELFQRIEANS-LNGTVVNEATWSLAEDHTDPTPATSFEAFGKFSIKCSYSINQGARMVMELNDHVIELSKGSKVPKDPEKLVGMLYRAIPTELFDPNDHAMDTTYLDGDLRIVRMAGPKFESVRDIFIRRGS 300
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A7S1CY27_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY27_CYCTE)

HSP 1 Score: 99.0 bits (245), Expect = 1.350e-19
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 3 
Query:  444 SAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHV-IDEG-----ITGRLEVACSYELDPRGRMIASLTGH--RLLPDGKMPRDVEWLVKRLQQAMPFELFDPNQLALETSYLDDSLRIVRM-----EGRLNIFLRDVSV 1022
            S +E K  LL LL       ++  T    + + +  LE  Y P QT+ F NLA  G W L +S    +    ++   EL Q V    G KG   NV +W V +D        +G   V C+Y ++   RM+  L GH   L    K+P+DV  ++  +  AMP ELFDP++ A++T+YLD  LRIVR      EG  +IF+R  S+
Sbjct:   29 SMSEVKDLLLDLLPRMTGKEEEFRT----VEHYVNLLEEQYSPPQTLDFLNLAMTGTWQLLFSTNLRRGSKLKIRLRELTQRVE-TIGLKGRVNNVALWDVALDPSSDVFDASGIFSVKCTYSINQGARMVVDLDGHTIELAKGSKLPKDVPAVIASIHGAMPPELFDPSEHAMDTTYLDGDLRIVRYTGPKYEGARDIFIRSGSL 229
[Close]
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Match: A0A482RYC8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYC8_9ARCH)

HSP 1 Score: 94.4 bits (233), Expect = 2.810e-18
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 3 
Query:  402 EVSADVQQVGTPVRSAAEAKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLASKGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKK--GNFTNVLVWHVIDEGI---TGRLEVACSYELDPRGRMIASLTGHRLLPDGKMPRDVEWLVKRLQQAMPFELFDPN 929
            E+S +   VG  VRS   A+ +LL L+ + V     V  H  +  Y  + LE  +IPIQT+PF+NLA++G W   YSN  ++   P++    L Q + P E     G+  N + +     G+   TG+L+V C Y  + RG +  +L GH +L D  +P D E  +  LQ+++P++ FDP+
Sbjct:   11 EISVE-NPVGPVVRSLCVARDELLHLIKADVAL--SVQQHMRI-EYLSKVLEKCHIPIQTVPFYNLATQGCWRQVYSNVLLRKPVPQMRC-NLTQTILPAEAASLSGSLVNSVFYSYDVPGVQVYTGKLDVQCEYACNSRGEVQVTLQGHVMLADDHVPEDTEGFLLDLQRSVPYDTFDPS 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2613.7141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FUY5_ECTSI2.440e-5249.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0TAS2_THAOC3.130e-2435.78PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A1Z5JQY1_FISSO1.890e-2338.12PAP_fibrillin domain-containing protein n=2 Tax=Fi... [more]
B8BYW6_THAPS2.910e-2337.27PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A7S2XQJ7_9STRA1.210e-2241.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7G6D7_PHATC6.330e-2237.93Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0AIY2_9STRA1.250e-2136.63Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A448ZFM7_9STRA1.840e-2033.01PAP_fibrillin domain-containing protein n=1 Tax=Ps... [more]
A0A7S1CY27_CYCTE1.350e-1934.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A482RYC8_9ARCH2.810e-1834.25Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2613contigH-paniculata_contig2613:6738..11465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D7FUY5
Hectar predicted targeting categorychloroplast
EggNOG OGs2DE0T@1,2S5P4@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2125
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2613.7141.1prot_H-paniculata_contig2613.7141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2613 6893..10488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.115365-UTR-H-paniculata_contig2613:6737..68921622929781.115365-UTR-H-paniculata_contig2613:6737..6892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2613 6738..6892 +
1691481007.8134272-UTR-H-paniculata_contig2613:6737..68921691481007.8134272-UTR-H-paniculata_contig2613:6737..6892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2613 6738..6892 +
1622929781.201819-UTR-H-paniculata_contig2613:10488..114651622929781.201819-UTR-H-paniculata_contig2613:10488..11465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2613 10489..11465 +
1691481007.8572288-UTR-H-paniculata_contig2613:10488..114651691481007.8572288-UTR-H-paniculata_contig2613:10488..11465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2613 10489..11465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.1307456-CDS-H-paniculata_contig2613:6892..73451622929781.1307456-CDS-H-paniculata_contig2613:6892..7345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 6893..7345 +
1691481007.8225653-CDS-H-paniculata_contig2613:6892..73451691481007.8225653-CDS-H-paniculata_contig2613:6892..7345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 6893..7345 +
1622929781.1477716-CDS-H-paniculata_contig2613:8537..86421622929781.1477716-CDS-H-paniculata_contig2613:8537..8642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 8538..8642 +
1691481007.8298507-CDS-H-paniculata_contig2613:8537..86421691481007.8298507-CDS-H-paniculata_contig2613:8537..8642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 8538..8642 +
1622929781.1697085-CDS-H-paniculata_contig2613:9615..98521622929781.1697085-CDS-H-paniculata_contig2613:9615..9852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 9616..9852 +
1691481007.837484-CDS-H-paniculata_contig2613:9615..98521691481007.837484-CDS-H-paniculata_contig2613:9615..9852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 9616..9852 +
1622929781.188138-CDS-H-paniculata_contig2613:10290..104881622929781.188138-CDS-H-paniculata_contig2613:10290..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 10291..10488 +
1691481007.8451254-CDS-H-paniculata_contig2613:10290..104881691481007.8451254-CDS-H-paniculata_contig2613:10290..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2613 10291..10488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2613.7141.1

>prot_H-paniculata_contig2613.7141.1 ID=prot_H-paniculata_contig2613.7141.1|Name=mRNA_H-paniculata_contig2613.7141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
MSCHKCSCFRVLTVVTCLLQAPSPATGFVVHSNITPRSRPLLRPRDASTS
KIALADTECRRLAILGETQPPLSKVSLFSTKAEVSADVQQVGTPVRSAAE
AKRDLLGLLSSPVTDPDDVPTHTALMAYQLENLEAGYIPIQTIPFFNLAS
KGKWHLAYSNAPVQPLGPRLETPELFQEVNPDEGKKGNFTNVLVWHVIDE
GITGRLEVACSYELDPRGRMIASLTGHRLLPDGKMPRDVEWLVKRLQQAM
PFELFDPNQLALETSYLDDSLRIVRMEGRLNIFLRDVSVLASSSPAVTSQ
EGTKGAPSTAHAESGSAPKETPADDGAIPQ*
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mRNA from alignment at H-paniculata_contig2613:6738..11465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2613.7141.1 ID=mRNA_H-paniculata_contig2613.7141.1|Name=mRNA_H-paniculata_contig2613.7141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4728bp|location=Sequence derived from alignment at H-paniculata_contig2613:6738..11465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGTCCTCATGTTCAACTACCTGTGCTCCACGTGAACAACCACAACAA
GCGTGTGCCTCCGTTGCTGCTAGCTGGATATATATTTTTACATTGCATGA
CAAACAAGGCTTTCAAAATTCAGGGCTTGTCCATCGTGCTTCCCTGTAAA
GGATTATGAGCTGCCATAAATGCTCATGTTTCCGAGTTTTGACGGTTGTG
ACATGTCTCCTCCAGGCCCCATCTCCAGCTACAGGCTTCGTCGTACATAG
CAACATCACCCCTCGGTCACGACCCCTTCTTCGCCCTCGAGATGCAAGTA
CTAGCAAGATCGCACTCGCAGACACAGAGTGCCGCCGTCTTGCGATACTT
GGTGAGACTCAACCACCGCTATCAAAGGTATCACTTTTTTCAACGAAAGC
TGAGGTCTCGGCAGATGTGCAGCAAGTAGGGACACCGGTTCGATCTGCCG
CCGAGGCCAAGCGAGATCTGCTGGGGTTGTTGTCCAGTCCAGTCACGGAT
CCAGATGATGTCCCCACGCACACAGCGCTCATGGCGTATCAGTTGGAAAA
CCTGGAGGCCGGCTATATTCCAATTCAGACCATACCGTTTTTCAATTTGG
CATCAAAGGTACGTGACCATTCTTGGCCAGGAGTAAAGTGGGGCAGACTG
TTGTGACGAAGTCCACCGGCGTGGGTATGTTAAATATGAGGATCGTGAAA
CAGACATCATTAGATCTGTACTGCTCGGGAGTGTTTTTCCCAGGGAAATA
ATTTTCTTCGTGGTCACCTTGACTTGGAAAAAGGATGACGCGCGCAAAAA
ATCAAAGTGTGTCATACGTGGGGAGGATCCGAGAAAAAATAGTGAATTAT
AAGTCTACGGTTGCGAATGGGGGAATATATGCATATCTCATCCATTTTCC
ACTACAAGGTGTCAAGGTACACCGACCGTTCTTTAGCGTTTCAAGTGGCA
TTTGGTCTAGGCTTCTCCAGATCAAACGCTACATACATGTTATGTGTAAT
CGGCCGCTTCAGTGAAGCGTGCTTCGAGGTGTAGGCGGGATTGATTAAGA
TCGTATCCATCGTCATCCACGACAACGGCGGCAACATGTGATAGCCTTGC
AGCAGCAGATAAAGGTCACCACCTGTCCAGCGATAATAAATCCAGCTCCA
TTGGAGAAAGGCTGCAGTCCGGCGGCTATTTCGTCGGCAGCGCGTGTCTA
GCTTGGCTGTGTTAGCAGTGACGTATGATTTGTGACAGCTGTAACAGTAT
TCGTTTTTGTGTGTGAGATACTAGGTGTGACGGGTGTGTGCTGTATGATG
TGTGGTAATCGGCTACCATCATGATCGTGGGATCGTTCGCATGCGTGTAG
CAAACCCTTGAACAACAAGTAAACGAATTTTGGCACTTATATTAACAAAA
AAACAGTGAAAGAGAGGGTACCTTTCGCCTATTGCGGCCATTTGAGGGCG
TCTGGGTCGTTTGAGCTGGAAAAAACTGCTTTAGCTTCTTTTTTACAGGG
CGAAACTGCACAAAAAGAACTCTCGAAAAACGTCCCCCGATGAGAAGTGG
TCTCACAAACGAGTCTCACCTCACATCTAAATTTAGCCATATGTATTCTC
GAGGTTTGCGCTGGTGTGAGGTTCAGCCTCAAGTTTTCAACGTACTTTAG
CGTGTTGACACGGCGTTGCTGTAAACCCCCAAAAATGATGCTGATTTTTT
TTAGCACCCGGAAGGCTGAGGCAAAAGCATTTATCCGATGCTTAATATGA
TCCTGTTTGATGTTTGCCCACTTGTTTGCGTTGTGTGTACTCGCTTTCAG
GGCAAGTGGCATTTGGCATACTCGAATGCCCCCGTGCAGCCTCTTGGGCC
CCGCCTTGAGACACCGGAACTGTTCCAGGAAGTGAATCCTGATGAAGGAA
AAAAGGTCGGTAGTGAGTCACTCGGTAGCCTTTTGTTATTTTTCTCTTCT
CTGTTGGGTTACCCGAGACCGCGGGGTCAGGCTCGGAGGGCGCAGTGGGG
AGGTAGATCTGCCCGCTACCGACCGTGATGCTCCGTACGTTTGCAATCCA
GTATCGCTGAGTATATTGGTAGTGAACAGCGTTGGCAACAATGTTGGGGT
CGTGTGAGACGAATGTATGGGAGTAGCGGGATATACATTTTCCTGTCTGT
ATGCAAGAAATCGGAATCAATATCCCAAGGCCCGGTGTTGCAGTGTTTTT
TACAGAAACTGACGTTTTTGCCTGTGTTACACTCTTGTCAACGTATGCAT
CCTATTTTCTGTTTTCTTCGAGGGGGACGAAGGGTGGCAGGCGGTAAAAT
GTTGAGTTGTATATCGGCGATGTCGCTTCTACAAAGTACTTGCTGATTGT
ATGGCAATACAAGCGCGTTGTGAATTCGCGGTTTAATTTCGTTGACCTAA
TATAGCAACCTTTTCCCCCCACGCGTGACAGTCGTTGTTAAAATAACAAT
GTTCAATTTTGAATAGAAAATAGCCAGTCATGATCGATTGGCTAGGTTGC
TCGAATTGAAAAGAGAAGAGGTCAGAGCGCCATTTTCTTATGCACTCAGC
GGCTGGATAGGATCTTTGGTCGCGCAAATATTTAAGCCATGGCAAGACAT
TGACACTTTGGGTCGGTCAATCAATCAGCGCATTTGTAGTGGTTTGGATG
ACCAATACACAGCCGTAGCGAAGCCCCGTGTTCTCTCGAAATATTCAAAT
ATTGGGCCTGATGGTTTTGTATTGCGCACATTGAAGGCACGTAACTCACG
AAAACCCGACATGTGCTACCCAAAGCGAGCTCATTGCCACCACCAGCACC
ACCAAAACTCACTCTCTCACTTCTCCGATGATGTGTTTCTTCTTTTATGG
GGTGGGTCATCTCATGATGGGTCCACAGGGAAATTTCACCAACGTTCTCG
TGTGGCATGTGATCGACGAAGGTATCACTGGTCGACTGGAGGTCGCATGC
AGTTATGAGCTTGATCCGAGGGGCCGCATGATCGCCTCACTTACGGGCCA
CCGCTTGCTGCCCGACGGGAAAATGCCGCGCGATGTAGAGTGGCTTGTTA
AGAGGTTGCAGCAGGCAATGCCGTTCGAGTTATTCGACCCCAACCAACTC
GCGTTGGAGACAAGCGTGAGTATATAATTTGAGCCTGATTTAATAATCAT
GAGATCCGAGGAGGTTGATGATCAGCTTTTTTGAAAAAGTCCAGAGTAGA
AACGAAATAGAAAATCCAAATAAAACGTTTGGTGAAAAAATGCAAAACTA
GATGCGAAATTAGTTCTGTTTTGCCCAAAAATGAATACGAAGATGCGAAA
GATTATTTTGCCATATCTCGACCCAATTCAGTGTCTTTTCTCGTGCAAGT
AAAACCAAAATAGTCAGGAATAATTTTCCCCCCTAGTGAACCATGATCGT
TTTCGTTTTCCCCTACTTTTCGTCTTTGGAGGGAGTGTTTGTTTTCATTT
CTCTCACCCAACTTTCCTCCCGGATGCCTTTACGACCGACCGACCGACCT
CTCTTTTGTTTTTCGCCCCTATTTAATATTAAATATGCACCCTGTGTTGT
CAGTACCTGGATGACAGCTTACGGATAGTGCGCATGGAGGGACGACTCAA
TATTTTCTTGCGGGACGTGTCCGTGCTAGCATCATCGTCACCGGCAGTAA
CGTCGCAAGAGGGAACTAAGGGAGCGCCATCGACCGCGCATGCCGAATCC
GGCTCGGCGCCGAAAGAAACGCCGGCTGACGATGGCGCCATACCTCAATG
AGGTTTTTGCGAACCGCGACGTATACCAACATTGACCCAACTGGTTATTT
TATCTTGAAAGTCCGCGACGTCGATCTTTCACAAGATCTTGTCGTACAAC
ACACAGTAGAAAAACTCGCACGATTTGCACTAGTTATTTCAGTGAACCAA
TCACCTAGTGTTGGTATTTCAGTAGATGTTTATACATAAAAGTACGTTAG
AGCTATTGTAGGGTGTTAGCAGCGGTTGTTTGTGTGTGCTTTGCTTGGTT
GTGCGCGTTTCCTTTCCGTCTCTTGTAATGGTGGCTGGCGTGGGAGTATG
TAAAAATGGTGTTCGTAGCAAATCCCAGTGAAAACAGCAATACTTAAGTG
TTGCCCCCCCTATTTTGAGCTCCCCCCCCCCCATGTTTCTCTCGCTGAGT
CCATCTCGGGTAAAAGATCAGGGCCTGGCATTCGAATCGCGGATGGGGAT
AATGTTGTCTTATTGTTTCGACGTAAAATTTCTCGACATTTGCAAGCGAG
GACGGATCATTCGATGCTGGTGTGTGTCCGTTACCGTTCAGGGTTTTTGG
CTCTTAACAAATTGTACATATTTGTACATGGAGTCATCCAGCTTTGAAGC
AGCGGTTGGCAGTGCAATACGCCTAGGGATGCGCAATGCTTTCATTAATC
CATAACTGGCTTGTACAACAGGGTATTTGTTGCGTATCTATACTGCGTAC
CTAACAAGACAATAGAAGTACGCTTTGTTCCATTTGTAAAACAAGTGTTC
CACTCTGATCAATTTTGTTTTGCCAAGTTGATAATCAGCGAACGTCGACA
ACGTGGTCAACACTAGTAAGACCGGTTGAGCGCGATCAACATAGATCAAC
TGTTCATGACCCGAAGATATTGAAAGGACCCAAAACCTCGACAGGAGCGG
AACGGGGACTAGGAGGGGGGGCCAATACAAAAAGAGTCAAGAGTGCACAC
ACTAATTCCATTATTTACCAAAATAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2613:6738..11465+

>mRNA_H-paniculata_contig2613.7141.1 ID=mRNA_H-paniculata_contig2613.7141.1|Name=mRNA_H-paniculata_contig2613.7141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig2613:6738..11465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTGCCATAAATGCTCATGTTTCCGAGTTTTGACGGTTGTGACATG
TCTCCTCCAGGCCCCATCTCCAGCTACAGGCTTCGTCGTACATAGCAACA
TCACCCCTCGGTCACGACCCCTTCTTCGCCCTCGAGATGCAAGTACTAGC
AAGATCGCACTCGCAGACACAGAGTGCCGCCGTCTTGCGATACTTGGTGA
GACTCAACCACCGCTATCAAAGGTATCACTTTTTTCAACGAAAGCTGAGG
TCTCGGCAGATGTGCAGCAAGTAGGGACACCGGTTCGATCTGCCGCCGAG
GCCAAGCGAGATCTGCTGGGGTTGTTGTCCAGTCCAGTCACGGATCCAGA
TGATGTCCCCACGCACACAGCGCTCATGGCGTATCAGTTGGAAAACCTGG
AGGCCGGCTATATTCCAATTCAGACCATACCGTTTTTCAATTTGGCATCA
AAGATGAGCTGCCATAAATGCTCATGTTTCCGAGTTTTGACGGTTGTGAC
ATGTCTCCTCCAGGCCCCATCTCCAGCTACAGGCTTCGTCGTACATAGCA
ACATCACCCCTCGGTCACGACCCCTTCTTCGCCCTCGAGATGCAAGTACT
AGCAAGATCGCACTCGCAGACACAGAGTGCCGCCGTCTTGCGATACTTGG
TGAGACTCAACCACCGCTATCAAAGGTATCACTTTTTTCAACGAAAGCTG
AGGTCTCGGCAGATGTGCAGCAAGTAGGGACACCGGTTCGATCTGCCGCC
GAGGCCAAGCGAGATCTGCTGGGGTTGTTGTCCAGTCCAGTCACGGATCC
AGATGATGTCCCCACGCACACAGCGCTCATGGCGTATCAGTTGGAAAACC
TGGAGGCCGGCTATATTCCAATTCAGACCATACCGTTTTTCAATTTGGCA
TCAAAGGGCAAGTGGCATTTGGCATACTCGAATGCCCCCGTGCAGCCTCT
TGGGCCCCGCCTTGAGACACCGGAACTGTTCCAGGAAGTGAATCCTGATG
AAGGAAAAAAGGGCAAGTGGCATTTGGCATACTCGAATGCCCCCGTGCAG
CCTCTTGGGCCCCGCCTTGAGACACCGGAACTGTTCCAGGAAGTGAATCC
TGATGAAGGAAAAAAGGGAAATTTCACCAACGTTCTCGTGTGGCATGTGA
TCGACGAAGGTATCACTGGTCGACTGGAGGTCGCATGCAGTTATGAGCTT
GATCCGAGGGGCCGCATGATCGCCTCACTTACGGGCCACCGCTTGCTGCC
CGACGGGAAAATGCCGCGCGATGTAGAGTGGCTTGTTAAGAGGTTGCAGC
AGGCAATGCCGTTCGAGTTATTCGACCCCAACCAACTCGCGTTGGAGACA
AGCGGAAATTTCACCAACGTTCTCGTGTGGCATGTGATCGACGAAGGTAT
CACTGGTCGACTGGAGGTCGCATGCAGTTATGAGCTTGATCCGAGGGGCC
GCATGATCGCCTCACTTACGGGCCACCGCTTGCTGCCCGACGGGAAAATG
CCGCGCGATGTAGAGTGGCTTGTTAAGAGGTTGCAGCAGGCAATGCCGTT
CGAGTTATTCGACCCCAACCAACTCGCGTTGGAGACAAGCTACCTGGATG
ACAGCTTACGGATAGTGCGCATGGAGGGACGACTCAATATTTTCTTGCGG
GACGTGTCCGTGCTAGCATCATCGTCACCGGCAGTAACGTCGCAAGAGGG
AACTAAGGGAGCGCCATCGACCGCGCATGCCGAATCCGGCTCGGCGCCGA
AAGAAACGCCGGCTGACGATGGCGCCATACCTCAATGATACCTGGATGAC
AGCTTACGGATAGTGCGCATGGAGGGACGACTCAATATTTTCTTGCGGGA
CGTGTCCGTGCTAGCATCATCGTCACCGGCAGTAACGTCGCAAGAGGGAA
CTAAGGGAGCGCCATCGACCGCGCATGCCGAATCCGGCTCGGCGCCGAAA
GAAACGCCGGCTGACGATGGCGCCATACCTCAATGA
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