mRNA_H-paniculata_contig26122.7138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26122.7138.1
Unique NamemRNA_H-paniculata_contig26122.7138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.240e-19
Identity = 62/139 (44.60%), Postives = 82/139 (58.99%), Query Frame = 1 
Query:   58 EEVE-DKVTIAMVPAGPDMFMTKGEEIRERAAALESAIEEARTEGLPPNGVAKIRKIVMNSHFHAFRRALS-GDPPADVEPLRVHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSSVAMAVPKK 468
            E+VE D     +V  GPDM M+  EE   R+A+L+SA+  A   GL    V ++R I+ +  ++AFRR L  GDPPA+VEPLRV +   AR  +ARPR  +  K  WL       A  G+VF N QA ++S AMA PKK
Sbjct:  677 EQVEPDPAVERLVARGPDMDMSPEEEASARSASLDSAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKK 807
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BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.020e-16
Identity = 61/158 (38.61%), Postives = 82/158 (51.90%), Query Frame = 1 
Query:    1 RSVEVNVETLLRVAGGANNEEVE-DKVTIAMVPAGPDMFMTKGEEIRERAAALESAIEEARTEGLPPNGVAKIRKIVMNSHFHAFRRALS-GDPPADVEPLRVHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSSVAMAVPKK 468
            R V + V+ L R  G    E+VE D     +V   P   M+  EE   R+A+L+SA+  A   GL    V ++R I+    ++AFR  +  GDPPA+VEPLRV +   A   +ARPR  +  K  WL          G+VF N QA  +S AMA PKK
Sbjct:  435 RRVTLAVDALQRSEG---REQVEQDPAVKRLVAQRPHADMSPEEEASARSASLDSAVSSAVVAGLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKK 588
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BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Match: A0A2P4XU97_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU97_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.970e-6
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  241 FHAFRRALSGDPPADVEPLRVHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSSVAMAVPK 465
            +  +R  L  DPPA+V PL V +   AR  + +PR       ++L E+  +L + G+V+ NPQ+R+SS  + V K
Sbjct:   53 YDVWRLELRADPPANVPPLEVRLRDGARPTKCKPRKYPPHIRKFLHEFNARLVELGLVYENPQSRWSSRVLPVKK 127
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BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Match: A0A225V3N5_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3N5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.460e-5
Identity = 34/111 (30.63%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:  133 IRERAAALESAIEEARTEGLPPNGVAKIRKIVMNSHFHAFRRALSGDPPADVEPLRVHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSSVAMAVPK 465
            ++E    L   I+ A   GLP    A +  + ++     +R A+S DPPA VEPLRV + + A   R+ PR  +  +A+++ EY   L    +V  N  +R++   + V K
Sbjct:  475 VKEPITTLNQLIDRAVANGLPQEHAAVVSDM-LSQFSDIWRDAVSSDPPARVEPLRVTLKSGAVPHRSPPRKYAPLQAQFIREYVKSLVDNNLVAKNNASRWACAVVPVRK 584
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BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Match: A0A225VV47_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VV47_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.390e-5
Identity = 35/105 (33.33%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:  133 IRERAAALESAIEEARTEGLPPNGVAKIRKIVMNSHFHAF-RRALSGDPPADVEPLRVHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSS 444
            + E    L  +I+ A   GLP    A +  ++  S F  F R A+S DPPA VE LRV + ++A   R+ PR  ++ +A+++ EY   L    +V  N  +R++S
Sbjct:  100 VNEPMTTLNQSIDRAVANGLPQEHAAVVSDML--SQFPDFWRDAVSSDPPARVEHLRVTLKSEAVPHRSPPRKYAQLQAQFICEYVKSLVDNNLVAKNNASRWAS 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26122.7138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.240e-1944.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK9_9PHAE9.020e-1638.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XU97_9STRA1.970e-636.00Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225V3N5_9STRA3.460e-530.63RNA-directed DNA polymerase (Fragment) n=1 Tax=Phy... [more]
A0A225VV47_9STRA5.390e-533.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26122contigH-paniculata_contig26122:2124..2591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog164328.Phyra86868
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGV8@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.9071913-CDS-H-paniculata_contig26122:2123..25911622929780.9071913-CDS-H-paniculata_contig26122:2123..2591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26122 2124..2591 +
1691481007.7414792-CDS-H-paniculata_contig26122:2123..25911691481007.7414792-CDS-H-paniculata_contig26122:2123..2591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26122 2124..2591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26122.7138.1prot_H-paniculata_contig26122.7138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26122 2124..2591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26122.7138.1

>prot_H-paniculata_contig26122.7138.1 ID=prot_H-paniculata_contig26122.7138.1|Name=mRNA_H-paniculata_contig26122.7138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
RSVEVNVETLLRVAGGANNEEVEDKVTIAMVPAGPDMFMTKGEEIRERAA
ALESAIEEARTEGLPPNGVAKIRKIVMNSHFHAFRRALSGDPPADVEPLR
VHVLADARAARARPRPMSRDKAEWLDEYFTKLAQAGMVFANPQARFSSVA
MAVPKK
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mRNA from alignment at H-paniculata_contig26122:2124..2591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26122.7138.1 ID=mRNA_H-paniculata_contig26122.7138.1|Name=mRNA_H-paniculata_contig26122.7138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig26122:2124..2591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGCGTCGAAGTAAATGTGGAAACTCTGTTGCGAGTCGCGGGAGGTGC
GAATAATGAGGAAGTTGAAGATAAAGTAACGATCGCAATGGTACCGGCAG
GGCCAGACATGTTCATGACAAAGGGCGAGGAGATACGAGAGAGGGCAGCG
GCGTTGGAGTCGGCGATAGAAGAGGCGAGGACCGAGGGTTTGCCGCCGAA
CGGAGTCGCGAAGATAAGAAAAATTGTCATGAACTCCCACTTCCATGCGT
TTCGGCGGGCGCTGAGCGGGGATCCACCGGCGGACGTGGAACCGCTGCGG
GTGCATGTACTCGCGGACGCGCGAGCCGCCCGGGCGCGGCCGCGCCCGAT
GTCGCGCGACAAGGCGGAATGGCTGGATGAGTATTTCACGAAGCTGGCAC
AGGCAGGTATGGTGTTCGCAAACCCCCAGGCAAGGTTCAGCAGCGTGGCG
ATGGCAGTGCCCAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26122:2124..2591+

>mRNA_H-paniculata_contig26122.7138.1 ID=mRNA_H-paniculata_contig26122.7138.1|Name=mRNA_H-paniculata_contig26122.7138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig26122:2124..2591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGCGTCGAAGTAAATGTGGAAACTCTGTTGCGAGTCGCGGGAGGTGC
GAATAATGAGGAAGTTGAAGATAAAGTAACGATCGCAATGGTACCGGCAG
GGCCAGACATGTTCATGACAAAGGGCGAGGAGATACGAGAGAGGGCAGCG
GCGTTGGAGTCGGCGATAGAAGAGGCGAGGACCGAGGGTTTGCCGCCGAA
CGGAGTCGCGAAGATAAGAAAAATTGTCATGAACTCCCACTTCCATGCGT
TTCGGCGGGCGCTGAGCGGGGATCCACCGGCGGACGTGGAACCGCTGCGG
GTGCATGTACTCGCGGACGCGCGAGCCGCCCGGGCGCGGCCGCGCCCGAT
GTCGCGCGACAAGGCGGAATGGCTGGATGAGTATTTCACGAAGCTGGCAC
AGGCAGGTATGGTGTTCGCAAACCCCCAGGCAAGGTTCAGCAGCGTGGCG
ATGGCAGTGCCCAAGAAGCGAAGCGTCGAAGTAAATGTGGAAACTCTGTT
GCGAGTCGCGGGAGGTGCGAATAATGAGGAAGTTGAAGATAAAGTAACGA
TCGCAATGGTACCGGCAGGGCCAGACATGTTCATGACAAAGGGCGAGGAG
ATACGAGAGAGGGCAGCGGCGTTGGAGTCGGCGATAGAAGAGGCGAGGAC
CGAGGGTTTGCCGCCGAACGGAGTCGCGAAGATAAGAAAAATTGTCATGA
ACTCCCACTTCCATGCGTTTCGGCGGGCGCTGAGCGGGGATCCACCGGCG
GACGTGGAACCGCTGCGGGTGCATGTACTCGCGGACGCGCGAGCCGCCCG
GGCGCGGCCGCGCCCGATGTCGCGCGACAAGGCGGAATGGCTGGATGAGT
ATTTCACGAAGCTGGCACAGGCAGGTATGGTGTTCGCAAACCCCCAGGCA
AGGTTCAGCAGCGTGGCGATGGCAGTGCCCAAGAAG
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