mRNA_H-paniculata_contig26111.7135.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26111.7135.1
Unique NamemRNA_H-paniculata_contig26111.7135.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: D7FTF8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.630e-14
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    4 GSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQE 120
            GSG++VKTF+S ADFVL+CGEPTNEPVVQ GPFVMNT++
Sbjct:  229 GSGVLVKTFDSSADFVLVCGEPTNEPVVQHGPFVMNTRQ 267
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A835YLH7_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLH7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.910e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQ 117
            +G G+ VK   + ADFVLICG+P  EP+VQ GPFVMNT+
Sbjct:  224 DGEGVEVKAGKAGADFVLICGKPHGEPIVQHGPFVMNTR 262
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: F4P3R3_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P3R3_BATDJ)

HSP 1 Score: 55.8 bits (133), Expect = 7.360e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQE 120
            +G  I V T + PA FV+I GEP NEP+VQ GPFVMNT++
Sbjct:  221 KGDSIKVVTASDPARFVIIAGEPINEPIVQHGPFVMNTEQ 260
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A0D2X453_CAPO3 (Pirin-like protein n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X453_CAPO3)

HSP 1 Score: 53.9 bits (128), Expect = 3.680e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQE 120
               G+   T + PA FVLI G+P NEP+VQ GPFVMNT+E
Sbjct:  231 SADGVTFSTKDEPAHFVLIAGKPLNEPIVQHGPFVMNTRE 270
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A562PGV0_9BURK (Pirin family protein n=1 Tax=Massilia flava TaxID=871742 RepID=A0A562PGV0_9BURK)

HSP 1 Score: 53.1 bits (126), Expect = 6.710e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQE 120
            E  G+ V+T  +PA F+LI G+P NEP+ Q GPFVMNTQE
Sbjct:  232 EADGVEVRT-EAPARFILIAGQPLNEPIAQYGPFVMNTQE 270
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A063Y3N8_9GAMM (Pirin n=1 Tax=Nitrincola lacisaponensis TaxID=267850 RepID=A0A063Y3N8_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 9.080e-7
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNT 114
            EG  + +KT + PA F+LI  EP NEPVVQ GPFVMNT
Sbjct:  226 EGDQVSLKTGDQPARFLLIAAEPLNEPVVQYGPFVMNT 263
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A4S2Q9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2Q9_OSTLU)

HSP 1 Score: 52.8 bits (125), Expect = 9.420e-7
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 GIMVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQE 120
            G++V+T +  A+FVLI G P +EP+VQ GPFVMNT+E
Sbjct:  234 GVVVQTTSESAEFVLISGRPNDEPIVQHGPFVMNTRE 270
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A3P8ZZ56_ESOLU (Pirin n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZZ56_ESOLU)

HSP 1 Score: 52.4 bits (124), Expect = 1.270e-6
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 EGSGIMV--KTFNSPADFVLICGEPTNEPVVQRGPFVMNTQEVKN 129
            +G G+ V  KT +  A FVLI G+P NEPVVQ+GPFVMNTQE  N
Sbjct:  221 DGDGVKVENKTLDI-AHFVLIAGQPINEPVVQQGPFVMNTQEEIN 264
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A830D628_9LAMI (Pirin-like protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D628_9LAMI)

HSP 1 Score: 52.4 bits (124), Expect = 1.340e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 GSGIMV-KTFNSPADFVLICGEPTNEPVVQRGPFVMNTQ 117
            G G+ V  TF+ P  F+L+ G+P NEPVVQ GPFVMNTQ
Sbjct:  267 GEGLSVWNTFSEPLRFILVGGQPLNEPVVQHGPFVMNTQ 305
[Close]
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Match: A0A816EVL1_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816EVL1_ADIRI)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-6
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 EGSGIMVKTFNSPAD--FVLICGEPTNEPVVQRGPFVMNTQE 120
             G G+  +  +S AD  FVLI G+P NEPVVQRGPFVMNT E
Sbjct:  222 NGDGLDFRNTSSTADCRFVLIAGQPINEPVVQRGPFVMNTPE 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26111.7135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTF8_ECTSI3.630e-1479.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLH7_9STRA3.910e-861.54RmlC-like cupin domain-containing protein n=1 Tax=... [more]
F4P3R3_BATDJ7.360e-860.00Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A0D2X453_CAPO33.680e-757.50Pirin-like protein n=3 Tax=Capsaspora owczarzaki (... [more]
A0A562PGV0_9BURK6.710e-760.00Pirin family protein n=1 Tax=Massilia flava TaxID=... [more]
A0A063Y3N8_9GAMM9.080e-763.16Pirin n=1 Tax=Nitrincola lacisaponensis TaxID=2678... [more]
A4S2Q9_OSTLU9.420e-759.46Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A3P8ZZ56_ESOLU1.270e-662.22Pirin n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8Z... [more]
A0A830D628_9LAMI1.340e-661.54Pirin-like protein n=1 Tax=Phtheirospermum japonic... [more]
A0A816EVL1_ADIRI1.360e-661.90Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26111contigH-paniculata_contig26111:194..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2880.D7FTF8
Preferred namePIR
KEGG koko:K06911
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003712,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007275,GO:0007586,GO:0008127,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009637,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009785,GO:0009889,GO:0009892,GO:0009987,GO:0010033,GO:0010466,GO:0010467,GO:0010556,GO:0010605,GO:0016020,GO:0016070,GO:0016491,GO:0016701,GO:0016702,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0030097,GO:0030099,GO:0030154,GO:0030162,GO:0030224,GO:0030234,GO:0030414,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042742,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045861,GO:0046483,GO:0046872,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051213,GO:0051246,GO:0051248,GO:0051252,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0055114,GO:0060255,GO:0061134,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097305,GO:0097306,GO:0097659,GO:0098542,GO:0098772,GO:0104004,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1901700,GO:1901701,GO:1903131,GO:1903506,GO:2001141
EggNOG free text desc.quercetin 2,3-dioxygenase activity
EggNOG OGs2QQ5A@2759,COG1741@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size141
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.351062-CDS-H-paniculata_contig26111:193..3191622929780.351062-CDS-H-paniculata_contig26111:193..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26111 194..319 -
1691481007.5650113-CDS-H-paniculata_contig26111:193..3191691481007.5650113-CDS-H-paniculata_contig26111:193..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26111 194..319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.3671443-UTR-H-paniculata_contig26111:319..3341622929780.3671443-UTR-H-paniculata_contig26111:319..334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26111 320..334 -
1691481007.5764487-UTR-H-paniculata_contig26111:319..3341691481007.5764487-UTR-H-paniculata_contig26111:319..334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26111 320..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26111.7135.1prot_H-paniculata_contig26111.7135.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26111 194..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26111.7135.1

>prot_H-paniculata_contig26111.7135.1 ID=prot_H-paniculata_contig26111.7135.1|Name=mRNA_H-paniculata_contig26111.7135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MVKTFNSPADFVLICGEPTNEPVVQRGPFVMNTQEVKNLCS*
back to top

mRNA from alignment at H-paniculata_contig26111:194..334-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26111.7135.1 ID=mRNA_H-paniculata_contig26111.7135.1|Name=mRNA_H-paniculata_contig26111.7135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig26111:194..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGATCCGGAATAATGGTCAAGACGTTCAACTCTCCTGCCGACTTCGT
GCTCATCTGCGGCGAGCCTACCAATGAGCCAGTCGTTCAAAGAGGGCCTT
TCGTCATGAATACACAAGAGGTGAAAAATCTTTGTTCTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26111:194..334-

>mRNA_H-paniculata_contig26111.7135.1 ID=mRNA_H-paniculata_contig26111.7135.1|Name=mRNA_H-paniculata_contig26111.7135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig26111:194..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAAGACGTTCAACTCTCCTGCCGACTTCGTGCTCATCTGCGGCGA
GCCTACCAATGAGCCAGTCGTTCAAAGAGGGCCTTTCGTCATGAATACAC
AAGAGGTGAAAAATCTTTGTTCTTGAATGGTCAAGACGTTCAACTCTCCT
GCCGACTTCGTGCTCATCTGCGGCGAGCCTACCAATGAGCCAGTCGTTCA
AAGAGGGCCTTTCGTCATGAATACACAAGAGGTGAAAAATCTTTGTTCTT
GA
back to top