mRNA_H-paniculata_contig26107.7132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26107.7132.1
Unique NamemRNA_H-paniculata_contig26107.7132.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26107.7132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26107contigH-paniculata_contig26107:1212..2272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1047
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26107.7132.1prot_H-paniculata_contig26107.7132.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26107 1686..2272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.0204308-UTR-H-paniculata_contig26107:1211..16851622929780.0204308-UTR-H-paniculata_contig26107:1211..1685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26107 1212..1685 +
1691481007.4178166-UTR-H-paniculata_contig26107:1211..16851691481007.4178166-UTR-H-paniculata_contig26107:1211..1685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26107 1212..1685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.0389688-CDS-H-paniculata_contig26107:1685..20381622929780.0389688-CDS-H-paniculata_contig26107:1685..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26107 1686..2038 +
1691481007.4276683-CDS-H-paniculata_contig26107:1685..20381691481007.4276683-CDS-H-paniculata_contig26107:1685..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26107 1686..2038 +
1622929780.0513544-CDS-H-paniculata_contig26107:2052..22721622929780.0513544-CDS-H-paniculata_contig26107:2052..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26107 2053..2272 +
1691481007.4361088-CDS-H-paniculata_contig26107:2052..22721691481007.4361088-CDS-H-paniculata_contig26107:2052..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26107 2053..2272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26107.7132.1

>prot_H-paniculata_contig26107.7132.1 ID=prot_H-paniculata_contig26107.7132.1|Name=mRNA_H-paniculata_contig26107.7132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MRERDTLPRSISTPYGGVSPWPSTGRSTTTSRRGRSFSAIWTNGATKAFT
LRPSMEWEPTCRQTQVWRKEQLPKPWGHLPSLLRGCTCSTCSRLLGEADQ
LLYCDTDSVFLVVGPGRPGRCLLKESGGSLGNWKLEASGYTIFAPTGSTS
YVLLRGNTGDMIVKSKGITQRCADFIGFRADPSIVLDMVQG
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mRNA from alignment at H-paniculata_contig26107:1212..2272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26107.7132.1 ID=mRNA_H-paniculata_contig26107.7132.1|Name=mRNA_H-paniculata_contig26107.7132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1061bp|location=Sequence derived from alignment at H-paniculata_contig26107:1212..2272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAGGACGTTTCGACATGCTTCGGGGAAATTTCGTGCGATGTGCTCCTC
AACGCTGGTCTTCCCGGTGTGCGAGACCTGCGCCACTGATGTTGCACCGA
ATGGATGCCGGCACAGTCCCTCCTGCATGAGTTGCGTTGAAGTCGGTAAC
CGCCGCTGTACTCATGTCTCATCGTGCGGTTCGTGGGTCTACCAACAAAC
GAGGCGATTGTGCGACCACACCGACGAGCAGAGGTCGGTACGATAAACAA
TCACCACGCCGTAACTCGCATGTACGAGGTGCGTCGTTAGCCACAGCGTG
AACGAGGGCCCTTTCAGGACTGGATATTTGCATGGTTCGTAGAGAAGACG
CTGGCGTCTGGAATTACGCCAAGAATTAACGAAACCATCTGTTACGGCAA
CCTGCAGTCCTGTACGTTCCAACAGTTCGGGCGAAAGTTCCCGCGAGAAC
CCGCGGATATTCCTCACAAGCGTAATGCGGGAGCGAGATACGTTGCCAAG
ATCAATCTCAACTCCCTATGGGGGCGTTTCGCCCTGGCCATCGACGGGAC
GGAGCACCACTACGTCAAGACGAGGGAGGAGCTTCTCGGCTATCTGGACA
AACGGCGCTACCAAAGCATTCACATTGAGGCCGTCGATGGAGTGGGAGCC
CACATGCCGTCAAACCCAGGTATGGCGAAAGGAGCAACTTCCGAAGCCGT
GGGGACATTTGCCATCGCTTTTGCGCGGCTGCACCTGTTCCACTTGCTCG
CGGCTGCTTGGGGAAGCCGATCAGCTCCTGTACTGTGACACCGACTCCGT
CTTTCTTGTCGTGGGGCCCGGTCGACCGTTGAACCCCCTAGAGGCCGGTG
CTTGCTTAAGGAGTCCGGGGGATCGTTGGGCAATTGGAAGTTGGAGGCTT
CTGGGTATACCATATTCGCGCCGACCGGTTCTACATCGTACGTTCTACTC
CGTGGGAACACTGGAGATATGATCGTTAAGAGCAAAGGTATCACTCAGAG
GTGCGCCGACTTTATAGGGTTTAGAGCGGATCCCAGTATCGTTCTTGATA
TGGTTCAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26107:1212..2272+

>mRNA_H-paniculata_contig26107.7132.1 ID=mRNA_H-paniculata_contig26107.7132.1|Name=mRNA_H-paniculata_contig26107.7132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig26107:1212..2272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGAGCGAGATACGTTGCCAAGATCAATCTCAACTCCCTATGGGGG
CGTTTCGCCCTGGCCATCGACGGGACGGAGCACCACTACGTCAAGACGAG
GGAGGAGCTTCTCGGCTATCTGGACAAACGGCGCTACCAAAGCATTCACA
TTGAGGCCGTCGATGGAGTGGGAGCCCACATGCCGTCAAACCCAGGTATG
GCGAAAGGAGCAACTTCCGAAGCCGTGGGGACATTTGCCATCGCTTTTGC
GCGGCTGCACCTGTTCCACTTGCTCGCGGCTGCTTGGGGAAGCCGATCAG
CTCCTGTACTGTGACACCGACTCCGTCTTTCTTGTCGTGGGGCCCGGTCG
ACCATGCGGGAGCGAGATACGTTGCCAAGATCAATCTCAACTCCCTATGG
GGGCGTTTCGCCCTGGCCATCGACGGGACGGAGCACCACTACGTCAAGAC
GAGGGAGGAGCTTCTCGGCTATCTGGACAAACGGCGCTACCAAAGCATTC
ACATTGAGGCCGTCGATGGAGTGGGAGCCCACATGCCGTCAAACCCAGGT
ATGGCGAAAGGAGCAACTTCCGAAGCCGTGGGGACATTTGCCATCGCTTT
TGCGCGGCTGCACCTGTTCCACTTGCTCGCGGCTGCTTGGGGAAGCCGAT
CAGCTCCTGTACTGTGACACCGACTCCGTCTTTCTTGTCGTGGGGCCCGG
TCGACCAGGCCGGTGCTTGCTTAAGGAGTCCGGGGGATCGTTGGGCAATT
GGAAGTTGGAGGCTTCTGGGTATACCATATTCGCGCCGACCGGTTCTACA
TCGTACGTTCTACTCCGTGGGAACACTGGAGATATGATCGTTAAGAGCAA
AGGTATCACTCAGAGGTGCGCCGACTTTATAGGGTTTAGAGCGGATCCCA
GTATCGTTCTTGATATGGTTCAAGGAAGGCCGGTGCTTGCTTAAGGAGTC
CGGGGGATCGTTGGGCAATTGGAAGTTGGAGGCTTCTGGGTATACCATAT
TCGCGCCGACCGGTTCTACATCGTACGTTCTACTCCGTGGGAACACTGGA
GATATGATCGTTAAGAGCAAAGGTATCACTCAGAGGTGCGCCGACTTTAT
AGGGTTTAGAGCGGATCCCAGTATCGTTCTTGATATGGTTCAAGGA
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