mRNA_H-paniculata_contig261.7129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig261.7129.1
Unique NamemRNA_H-paniculata_contig261.7129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: D7FIA3_ECTSI (Ankyrin repeat domain-containing protein 39 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.270e-25
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:  475 ASAGDGVDGTDVDPTDFLNAAEGVNGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPIDCVRRATAQQGKRARRLRNALCDLSDSASSDDGENI 771
            +SAG+G DG       FL+  E + GWT LHLAA+G +LDVVY+LM+ GC+P VKDKVGD+PI C+RR    +G    RLRNAL DLSDS  S   EN+
Sbjct:   41 SSAGEGTDGESNAVAGFLDLRENLGGWTALHLAAIGGHLDVVYMLMEVGCDPRVKDKVGDQPIHCIRRKRTSEGL-VTRLRNALLDLSDSEESSCEENM 138
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: A0A7S2BI40_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI40_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.590e-8
Identity = 47/157 (29.94%), Postives = 64/157 (40.76%), Query Frame = 1 
Query:  217 SVASMIMQGNIAGLIHRLRDSE--IVSEADAHGWTPLHWACSRGNVVVVHILLQEIRAAKAEGCLRLVASECDFSTILRM*TCML*STASAGDGVDGTDVDPTDFLNAAEGVNGWTPLHLAAVG---EYLDVVYLLMDAGCNPNVKDKVGDRPIDCV 672
            SV  M  +   A  + RL   E   + E DAH WT L WA S  NV +V  LL  +R                                 AG+  D        +L++ + +NGWT LHLAA+G    +     LL+ A    +VKD   D P+DC+
Sbjct:  165 SVVKMAQRDTPARELRRLVKEEGGDLFETDAHEWTALMWAVSEANVDMVETLLSLLR--------------------------------DAGEASDDEAESAKGWLDSKDRINGWTALHLAAIGGTRNHFSCARLLVRARAKLDVKDACLDEPLDCI 289
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: A0A2B4RW24_STYPI (Caseinolytic peptidase B protein-like n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RW24_STYPI)

HSP 1 Score: 59.3 bits (142), Expect = 1.850e-6
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = 1 
Query:  226 SMIMQGNIAGLIHRLRDS-EIVSEADAHGWTPLHWACSRGNVVVVHILLQEIRAAKAEGCLRLVASECDFSTILRM*TCML*STASAGDGVDGTDVDPTDFLNAAEGVNGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPID 666
            S + + N    + RL D    V++    GWTPLH A   G+   V +LL+      A+          +FST  R  T       S  D +   D D +D L+     +G+TPLH AA+G+ L+ V LL++AG +P +KD  G + ++
Sbjct:   26 SRLAKRNETNELQRLIDQGHDVNQKHQLGWTPLHTAAFNGSERSVALLLKAGADVNAKD---------EFSTAFR--TAQKKHMRSF-DVIFMRDDDFSDKLHRGANFSGFTPLHYAALGDSLECVQLLLNAGADPTLKDNSGYQAVE 161
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: A0A3M6T7V5_POCDA (Uncharacterized protein (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T7V5_POCDA)

HSP 1 Score: 57.0 bits (136), Expect = 5.940e-6
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1 
Query:  268 LRDSEIVSEADAHGWTPLHWACSRGNVVVVHILLQEIRAAKAEGCLRLVASECDFSTILRM*TCML*STASAGDGVDGTDVDPTDFLNAAEGVNGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPID 666
            +   + V++    GWTPLH A   G+   + +LL+      A           +FST  R  T       S  D +   D D +D L+ +   +G+TPLH AA+G+ L+ V LL++AG +P +KD  G + ++
Sbjct:   97 INQGQNVNQKHLLGWTPLHTAAFNGSERSLALLLKAGADVNARD---------EFSTAFR--TAQKKHMRSF-DVILMRDDDFSDRLHRSANFSGFTPLHYAALGDSLECVQLLVNAGADPTLKDNSGYQAVE 217
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: UPI0009E467C7 (caseinolytic peptidase B protein homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E467C7)

HSP 1 Score: 56.2 bits (134), Expect = 1.910e-5
Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:  268 LRDSEIVSEADAHGWTPLHWACSRGNVVVVHILLQEIRAAKAEGCLRLVASECDFSTILRM*TCML*STASAGDGVDGTDVDPTDFLNAAEGVNGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPID 666
            ++    +++  + GWTPLH A   G+   V +L++      A           +FST  R  T       S  D +   D D +D L+     +G+TPLH A +G+ L+ + LL++AG +P +KD  G + I+
Sbjct:    8 IKQGHDINQKHSLGWTPLHVAAFNGSERSVELLIEAGADVNARE---------EFSTAFR--TAQKKHMRSF-DVIFMRDDDFSDRLHRNANFSGFTPLHYAVLGDSLECIRLLVNAGADPTLKDSSGHQAIE 128
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: A0A5D6Y7E1_9STRA (Kinesin motor domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7E1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.930e-5
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  526 LNAAEGVNGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPIDCVRRATAQQGKRARRLRNALCDLSDSA 747
            ++A E +NGWTPLH+AAV E L  V LL+ +G +  +KD  GD   D +R   + +GK+  R+   L   + S+
Sbjct: 1572 IDAVEHINGWTPLHVAAVRELLPCVKLLLRSGASARIKDSYGDSASDILR---SVRGKKRERILQMLLQFAPSS 1642
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BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Match: A0A818H483_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818H483_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 9.780e-5
Identity = 53/192 (27.60%), Postives = 82/192 (42.71%), Query Frame = 1 
Query:  247 IAGLIHRLRDSEIVSEADAHGWTPLHWACSRGNVVVVHILLQEIRAAKAE----GCLRLVASECDFSTILRM*TCML*STASAGD-------------------GVDGTDVDPTDFLNAAEGV-------NGWTPLHLAAVGEYLDVVYLLMDAGCNPNVKDKVGDRPIDCVRRATAQQGKRARRLRNALCD 732
            +A L+  + D E+    D HGWTPL  A +RG+   + +LL   R AK +    G + L+A   +F  I  + T +L   A A                      VD    D    L     V       +GW+P+HLAA    +D++ LL++ G + N+KD  G+ P+   R   A +     + R  + D
Sbjct:  134 LAPLLDYVDDFEM---RDEHGWTPLMTAVNRGSKQNISMLLA--RGAKVDCDLVGGMSLIADAMNFDDI-ELITMLLDHGARAAPTPEMLATNQDENVHHLLHYAVDDDLYDVAKLLIEKGKVPLNTLDQSGWSPMHLAAGHNNVDMLTLLIEKGADINIKDSQGNTPLAWAREMNATETVNELQARGGIAD 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig261.7129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FIA3_ECTSI1.270e-2555.56Ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A7S2BI40_9STRA7.590e-829.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2B4RW24_STYPI1.850e-631.76Caseinolytic peptidase B protein-like n=3 Tax=Styl... [more]
A0A3M6T7V5_POCDA5.940e-630.83Uncharacterized protein (Fragment) n=2 Tax=Pocillo... [more]
UPI0009E467C71.910e-529.32caseinolytic peptidase B protein homolog n=1 Tax=O... [more]
A0A5D6Y7E1_9STRA7.930e-539.19Kinesin motor domain-containing protein n=1 Tax=Py... [more]
A0A818H483_9BILA9.780e-527.60Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig261contigH-paniculata_contig261:39320..42332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size772
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig261.7129.1prot_H-paniculata_contig261.7129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig261 40350..42176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.2271113-UTR-H-paniculata_contig261:39319..394461622929779.2271113-UTR-H-paniculata_contig261:39319..39446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 39320..39446 -
1691481007.1902905-UTR-H-paniculata_contig261:39319..394461691481007.1902905-UTR-H-paniculata_contig261:39319..39446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 39320..39446 -
1622929779.2410204-UTR-H-paniculata_contig261:39815..400061622929779.2410204-UTR-H-paniculata_contig261:39815..40006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 39816..40006 -
1691481007.1986432-UTR-H-paniculata_contig261:39815..400061691481007.1986432-UTR-H-paniculata_contig261:39815..40006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 39816..40006 -
1622929779.2564595-UTR-H-paniculata_contig261:40348..403491622929779.2564595-UTR-H-paniculata_contig261:40348..40349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 40349..40349 -
1691481007.2073874-UTR-H-paniculata_contig261:40348..403491691481007.2073874-UTR-H-paniculata_contig261:40348..40349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 40349..40349 -
1622929779.3094199-UTR-H-paniculata_contig261:42176..423321622929779.3094199-UTR-H-paniculata_contig261:42176..42332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 42177..42332 -
1691481007.2329812-UTR-H-paniculata_contig261:42176..423321691481007.2329812-UTR-H-paniculata_contig261:42176..42332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig261 42177..42332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.2769792-CDS-H-paniculata_contig261:40349..405871622929779.2769792-CDS-H-paniculata_contig261:40349..40587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig261 40350..40587 -
1691481007.217794-CDS-H-paniculata_contig261:40349..405871691481007.217794-CDS-H-paniculata_contig261:40349..40587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig261 40350..40587 -
1622929779.2920587-CDS-H-paniculata_contig261:42117..421761622929779.2920587-CDS-H-paniculata_contig261:42117..42176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig261 42118..42176 -
1691481007.2256165-CDS-H-paniculata_contig261:42117..421761691481007.2256165-CDS-H-paniculata_contig261:42117..42176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig261 42118..42176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig261.7129.1

>prot_H-paniculata_contig261.7129.1 ID=prot_H-paniculata_contig261.7129.1|Name=mRNA_H-paniculata_contig261.7129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MVNIDQYSEGESKNDEGRQMSVASMIMQGNIAGLIHRLRDSEIVSEADAH
GWTPLHWACSRGNVVVVHILLQEIRAAKAEGCLRLVASECDFSTILRM*
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mRNA from alignment at H-paniculata_contig261:39320..42332-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig261.7129.1 ID=mRNA_H-paniculata_contig261.7129.1|Name=mRNA_H-paniculata_contig261.7129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3013bp|location=Sequence derived from alignment at H-paniculata_contig261:39320..42332- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGGCGTATAGAACAACAGGAACGAACAGAAGACGGTGACGACAGCCA
AGAGAGCGAGGACAACAATGAGCCGTCCGCTGAGCAGCATAGCCCCGAAG
AGGCGACAGAAGCTCATGCGAGGATTTTGCTCGAAAGAAGGCGTCGCCGC
TGCCCGATGGTGAACATCGATCAGTACAGCGAAGGGGAGAGCAAGAACGA
CGAGGGAAGACAAATGTATGTATATAAGCTTCGCTGCAATCTCCCACTGC
ATTCTTGAATGTCAATACAGTTACTTAGTATTAGCACTGGAATTGAAATT
TGACGCTTTGTGCAATTTTTGTTTAAGATATAACAGAAAAGATATCAGAG
GAATTTACTGTATATACTATTTTGTTTTAGATGGATGTCCTTCAGTATGC
TGAAGGGAGCCGTTTCGACTGAAGGGGAGGGCGAATATTCATTGTCGATG
ACATGTTGTCTTGATTCTTGTGTGGGATCATTTCAGAACAGTTATTTTTT
GGCCGTTATCTTTGGGCGTTGCGAATTCATTTTCACACCTTGTTCACACG
CAAGTTGCCTACACGGTGCATTGGGCGCGGTGCATTGTCGGTGCCAAATA
ACAGGTCCGCAGTCCAATTATGTAGATACCTAGCTCGAAAAATAGAACTT
GTCATTGTATTGGCCCCTCGAGTTGAAACGGCTCAGGGTATTGATATTCA
GTAATTTGAATATTTTGGCATAAAGGTTTATAACCATCTCTCTTATCTGG
CTTACAACGATATTTTGTAAATATCTTTGCAATTTTGGATTCGTCAAAAA
TAAAACATATCATTCGAAAGCCTACACGTTCAGCTTGCATGCAGACTTCT
TCAAATTGTTTTAAAATGCCAAAATGGTTGAGTAACCTGGTATCTCAACA
CGTTTTTTTTTTTCGGAAATGGCAAATTTTGCAAAAACAGTCAAATAATC
CTTGATAGGCTGAAAATCATGGTTTTCCATTGTGTCACGAGCCATTTCTC
CACATGAACGTAGAGTTTCCAAACGACCAATAGCGCAAATGAAGCTCCTC
AATCATACAAAGCTACTCGTGGCGAAAGGGGTGACGAGTACTAGGTCGAC
GTTAACATCCACAGCCTACACACGGGCAAGGGCACGCCGAGGAAGCTAAA
CCTGGCATGGAGGGAGAAAGGATGGAACATCAAGCTCGTAACACAACCGG
CGCAGTCTCTCGATCTCAATATCAACGATTTTCGATTTTTCGCATCCATG
AAATCCAGAGTATGGAGGAAGCGCAACCGTACGTTAGACGCTCTTGTAGA
GGGGGTTAAGAGTATGTAAGGCCAGTATGACGCGGATACTCTAGAGTTGG
TTTGGTAGAGCCTATTCTTCAAGCGGTACAAGCAAGTGTTGAACGCGCTG
GGGGGAAACGATGTAGATACTGGGCATACCGGGAGTAGGAAAAGGCAGCG
TGAGGGGCTTGTGGACCACTTGGTCCCGATTGCCAGAGCTGCTTACGACG
TGGCCTTCAGTTGATATATTGATGGGAAGGATGGCAGTAATGAACAACGA
CAATTGTTTGTAGTACCTAGTATGGAACGCCAAGAGATACAACGTAATAA
ACCAATTCTTAATAGGAGATCTCCTTGAGACTTCATCAACCATTAATGAT
GATTTTCAGACATGTCACCCACGACAACAGGGAAATTTCAATAAGTTATT
ACTAAAGGGTCGACTCTGTATCGCCTGCCCACTTGCACGTCACAGGTCGG
TCGCTAGCATGATTATGCAAGGGAATATCGCGGGACTCATACATCGACTG
CGAGATAGCGAGATAGTCTCCGAGGCGGATGCTCATGGGTGGACTCCGTT
GCATTGGGCTTGCTCGCGAGGAAACGTTGTTGTAGTGCATATTCTACTTC
AGGAGATACGAGCCGCTAAAGCCGAGGGGTGTCTACGCCTTGTGGCCAGT
GAGTGCGACTTTTCTACAATTCTGCGGATGTAGATGTTCCCTCGCACTTG
AGGCATTTATTTAGGTCTCCTGCAGTATACTGCAGCACCTAGGGAAACGG
TTTTGGGTGGGAGCTTCTCAGCTTTTTCACATCCTCACCCGATTTTTATT
TATTATTTTATCATATTTTCACCATTTAGTCATTGATTCCGAGGCAAAAT
TTAAGCAGCGTTTCTTGAGCAAATTTGTTAGTAGGGAAGTCCAAAAATTG
AACCTGAATTTTTCAGTATCCAAAATTGTAACTAGGCTATGTCATGCATT
GTGACGTCAATACACGCAACCAGCAAGCGAATTCGCTTCCAATACAACAT
CTCCGTCTCTTCATCGTTGTCCGATGCTTGCATGCTCTAATCCACAGCAA
GTGCCGGAGACGGAGTGGACGGAACCGATGTCGACCCCACTGATTTTCTG
AACGCGGCGGAAGGCGTCAACGGATGGACGCCTCTCCACCTAGCCGCAGT
AGGAGAATACTTGGATGTGGTGTACCTGCTTATGGATGCCGGATGCAATC
CGAACGTGAAGGACAAGGTGAACCCACACAACTCTTTGTGTTTTTTCGAG
CGAAGTGGCAGTGTCACCGTTGTACACAAATGTGAGTTGGTGAGTCCGAG
ATAAATGGCCATGTTTCTGTTAGAAGGTATTGATAACCACTGAACTCCTG
CCGCGCTGAAAATTCCGATATGTGGTCTTGTCGATAGCACGAAAGTTCGC
CAATAAGGGTGTAAAGTGAAAGGAATAATGAATAATGTAATTTCGAAAAA
AAAGTCGATGATCACGTGCATTGATGGAACTCAACCAAACTTGTTGTCTT
CGATTAAAACACATCTACATAGTGTAACTTGTGTAGTCCACTGACAAGTC
CTATTTCTAATGTTGATACTCCTTCCACTTTGACAGGTGGGTGACAGACC
AATCGATTGTGTGAGACGGGCTACAGCCCAGCAAGGGAAGCGGGCGAGGC
GACTACGAAACGCCTTATGCGATCTTTCAGACTCGGCGAGCAGCGACGAT
GGCGAGAACATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig261:39320..42332-

>mRNA_H-paniculata_contig261.7129.1 ID=mRNA_H-paniculata_contig261.7129.1|Name=mRNA_H-paniculata_contig261.7129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig261:39320..42332- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACATCGATCAGTACAGCGAAGGGGAGAGCAAGAACGACGAGGG
AAGACAAATATGGTGAACATCGATCAGTACAGCGAAGGGGAGAGCAAGAA
CGACGAGGGAAGACAAATGTCGGTCGCTAGCATGATTATGCAAGGGAATA
TCGCGGGACTCATACATCGACTGCGAGATAGCGAGATAGTCTCCGAGGCG
GATGCTCATGGGTGGACTCCGTTGCATTGGGCTTGCTCGCGAGGAAACGT
TGTTGTAGTGCATATTCTACTTCAGGAGATACGAGCCGCTAAAGCCGAGG
GGTGTCTACGCCTTGTGGCCAGTGAGTGCGACTTTTCTACAATTCTGCGG
ATGTAGGTCGGTCGCTAGCATGATTATGCAAGGGAATATCGCGGGACTCA
TACATCGACTGCGAGATAGCGAGATAGTCTCCGAGGCGGATGCTCATGGG
TGGACTCCGTTGCATTGGGCTTGCTCGCGAGGAAACGTTGTTGTAGTGCA
TATTCTACTTCAGGAGATACGAGCCGCTAAAGCCGAGGGGTGTCTACGCC
TTGTGGCCAGTGAGTGCGACTTTTCTACAATTCTGCGGATGTAG
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