mRNA_H-paniculata_contig261.7127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: D7FIA6_ECTSI (Similar to cyclin T2 isoform b isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA6_ECTSI) HSP 1 Score: 295 bits (754), Expect = 1.840e-82 Identity = 153/286 (53.50%), Postives = 196/286 (68.53%), Query Frame = 2
Query: 380 VDTFEGRRSDKGWKDRGWYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGHKTWIQALRFPDHRALNRACCQLIEVLDNDPGKSGDRLTKDMIVAALVKAGHIKS 1237
V T G+RSD GW+ RGW F+ EELA+ PSL+DN++ EEK R+K H FI+D + LR L ++AA + QRYF+QVSFRKIDR+D AAAAIFLASKVEE R + V+ VT +R+ + L EY YKDR+LK ENQLVNALGFDFMIEHP+ H + YL EEGW+ ++ K S + SLRGT+CLE+ PT RAR+ Y++LL NN+ PPG W + + F DHR LNRA CQL+E LD+D GK+G ++TK + AALV+AGHIK+
Sbjct: 25 VITKVGKRSDLGWESRGWKFTQEELANPPSLRDNMNDSEEKEYRRKAHTFIYDCCQVLRAKALVIAAAMTISQRYFSQVSFRKIDRSDTAAAAIFLASKVEEFRVHIKDVMMVTHRVRHKNERR---LVENSDEYNRYKDRLLKAENQLVNALGFDFMIEHPFGHSNDLVAYLCEEGWVPADKSALISKGSHHLLIKSLRGTLCLEYPPTFRARLVTYLSLLVNNISPPPGG--WAEMIEFEDHRRLNRAACQLLETLDDDSGKTGKKITKKRVAAALVEAGHIKN 305
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: D7FVH4_ECTSI (Si:dkey-18f23.10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH4_ECTSI) HSP 1 Score: 188 bits (478), Expect = 3.450e-45 Identity = 112/299 (37.46%), Postives = 167/299 (55.85%), Query Frame = 2
Query: 380 VDTFEGRRSDKGWKDRGWYFSPEELASLPSLQDNV--------------SIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVT-----WAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGHKTWIQALRFPDHRALNRACCQLIEVLDNDPGKSGDRLTKDMIVAALVK 1219
V T GRRSD GW+DRGW F+ EEL + P ++ + + +K R + H+ + + K L+ + ++ A + QR+ A VSF I+ +D AA++ LASKVE+ + + VL VT +AI DP++ Y+ +K RV+K+EN++++ALGFDF+IEH Y H + + GW+RE K + + SL+ TMCLE+ PT RAR+ Y++LL NNVP PP W + L+F D L RA + +E LDND GKSG ++T+ + AL K
Sbjct: 20 VMTRVGRRSDFGWEDRGWKFTLEELENPPFVKKSSRMGCGQVDPLWRAKQLRYDKEHRAQAHKLMLEICKRLKTKAVVIAGAMTIYQRFLALVSFTDINLHDTVAASVLLASKVEDFKIHIKDVLIVTNKVANYAIIGRSDPSE--------AYKRFKTRVVKVENKIMSALGFDFLIEHAYPHANDLILHFQRMGWVRENMGALISKGCCHLLSQSLKWTMCLEYPPTFRARLATYLSLLVNNVP-PPQSGEWTEVLQFKDPGQLERATEEWLETLDNDTGKSGTKITRHRVTKALAK 309
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A6H5JI93_9PHAE (CYCLIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI93_9PHAE) HSP 1 Score: 130 bits (327), Expect = 9.360e-31 Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 2
Query: 380 VDTFEGRRSDKGWKDRGWYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRY 736
V T G+RSD GW+ RGW F+ EELA+ PSL+DN++ EEK R+K H FI+D + LR L ++AA + QRYF+QVSFRKIDR+D AAAAIFLASKVEE R + V+ VT +R+
Sbjct: 25 VITKVGKRSDLGWESRGWKFTQEELANPPSLRDNMNDSEEKEYRRKAHTFIYDCCQVLRAKALVIAAAMTISQRYFSQVSFRKIDRSDTAAAAIFLASKVEEFRVHIKDVMMVTHRVRH 143
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A6H5JJ90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ90_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.300e-29 Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = 2
Query: 851 MIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGHKTWIQALRFPDHRALNRACCQLIEVLDNDPGKSGDRLTKDMIVAALVKAGHIKS 1237
MIEHP+ H + YL EEGW+ ++ K S + SLRGT+CLE+ PT RAR+ Y++LL NN+ PPG W + + F DHR LNRA CQL+E LD+D GK+G ++TK + AALV+AGHIK+
Sbjct: 1 MIEHPFGHSNDLVAYLCEEGWVPADKSALISKGSHHLLIKSLRGTLCLEYPPTFRARLVTYLSLLVNNISPPPGG--WAEMIEFEDHRQLNRAACQLLETLDDDSGKTGKKITKKRVAAALVEAGHIKN 127
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A183J4F1_9BILA (CYCLIN domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J4F1_9BILA) HSP 1 Score: 104 bits (259), Expect = 1.060e-21 Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 2
Query: 377 MVDTFEGRRSDKGWKDRGWYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGW 913
M + + G + W FS E LA PS+++ +S ++E R+++ I + L L L M+ A R++A SF + R+D AAAA+FLA+KVEEC KL+YV++V+ A+++ +P L +Y +++ EN L+ L FD +EHP+ H Q + + W
Sbjct: 1 MAAEAKAQHPTSGQHEINWIFSVERLADAPSIREGLSAEQELFYRQQSANHIQEMGSKLTLSQLCMNTALVFMHRFYAFHSFHRFPRSDIAAAALFLAAKVEECPRKLEYVVKVSHALQHRDNPG---LDVKSDKYAEEAQKIVTYENILLQTLSFDLHVEHPHAHVVRCCQMIKGKLW 176
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A7R8CB00_LEPSM (CCNT n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CB00_LEPSM) HSP 1 Score: 108 bits (269), Expect = 4.640e-20 Identity = 83/267 (31.09%), Postives = 128/267 (47.94%), Query Frame = 2
Query: 431 WYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKM---ENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLR-GTMCLEHAPTIRARMGVYITLLCNN--VPTPPGHKTWIQALR-FPDHRALNRACCQLIEVLDNDPGKSGDRLTKDMIVAA 1210
WYFS E L PS + N++ ++E R++ FI D + L +P L ++ A QR++ SF + RN AAAA+FLA+KVEE KL++V++V + + P P D E Y ++ ++ EN L+ LGFD I+HP+ H Q LV+ + + S +A SL TMCL H PTI A + +++ N +P K W + LN+ + + + D P RL K ++ A
Sbjct: 48 WYFSAESLHMTPSRRHNITSEKELGYRQQAANFIQDMGQRLHVPQLCINTAIVYMQRFYMFHSFTRFHRNTIAAAALFLAAKVEEQPRKLEHVIKVAHICLHREQP------PLDTRSEQYIEQAQELVTNENILLQTLGFDVAIDHPHTHVVRCCQ-LVKAS-------KDLAQTSYFMATNSLHLTTMCLRHTPTIVACVCIHLACKWTNYKIPLSSRGKEWFLYVDPNTSLELLNKLTDEFLTIFDRCPS----RLKKKIMATA 296
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: UPI00067687BF (cyclin-T1 n=1 Tax=Papilio polytes TaxID=76194 RepID=UPI00067687BF) HSP 1 Score: 100 bits (248), Expect = 2.930e-19 Identity = 68/245 (27.76%), Postives = 118/245 (48.16%), Query Frame = 2
Query: 431 WYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGH--KTWIQAL-RFPDHRALNRACCQLIEVLD 1156
WYF+ E+L + PS + + D+E R++ I D + L++ L ++ A R++A SF + RN AAAA+FLA+KVEE KL+YV++V + + + T ++Y+ ++ EN L+ LGFD I+HP+ H +V + + + A + +N TMCL++ PT+ A +++ +N P H + W + R L R + + + D
Sbjct: 8 WYFTKEQLQNSPSRRCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSFTQFHRNAIAAAALFLAAKVEEQPRKLEYVIKVAHVCLHRGEGVNAL---TSEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTH-------VVRTCHLVKAPKDLAQTSYFMASNSLHLTTMCLQYRPTVVACFCIHLASKWSNWSIPQSHEGRHWFSYVDRSVTTELLERLTAEFLHIFD 242
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A5E4QUS5_9NEOP (CYCLIN domain-containing protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4QUS5_9NEOP) HSP 1 Score: 99.8 bits (247), Expect = 8.330e-19 Identity = 71/260 (27.31%), Postives = 124/260 (47.69%), Query Frame = 2
Query: 431 WYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGH--KTWIQAL-RFPDHRALNRACCQLIEVLDNDPGKSGDRLTKDMI 1201
WYF+ ++L + PS + + D+E R++ I D + L++ L ++ A R++A SF + RN AAAA+FLA+KVEE KL+YV++V + + + T ++Y+ ++ EN L+ LGFD I+HP+ H +V + + + A + +N TMCL++ PT+ A +++ +N P H + W + R L + + + + D P RL K M+
Sbjct: 8 WYFTKDQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSFTQFHRNAIAAAALFLAAKVEEQPRKLEYVIKVAHVCLHRGEGVNAL---TSEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTH-------VVRTCHLVKAPKDLAQTSYFMASNSLHLTTMCLQYRPTVVACFCIHLASKWSNWQIPQSHEGRHWFSYVDRTVTTDLLEKLTAEFLHIFDKCPS----RLKKKMM 253
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: UPI0018D1B707 (cyclin-T-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1B707) HSP 1 Score: 103 bits (257), Expect = 1.250e-18 Identity = 69/250 (27.60%), Postives = 121/250 (48.40%), Query Frame = 2
Query: 431 WYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNN--VPTPPGHKTWIQAL-RFPDHRALNRACCQLIEVLDNDPGK 1171
WYF+ E+L + PS + + D+E R++ I D + L++ L ++ A R++A SF + RN AAAA+FLA+KVEE KL+YV++V + + V + T ++Y+ ++ EN L+ LGFD I+HP+ H +V + + + A + +N TMCL++ PT+ A +++ +N +P + W + R L R + + + D P +
Sbjct: 15 WYFTKEQLQNSPSKRCCLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSFTQFHRNSIAAAALFLAAKVEEQPRKLEYVIKVAHVCLHRGERGDAVSQLTTEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTH-------VVRTCHLVKAPKDLAQTSYFMASNSLHLTTMCLQYRPTVVACFCIHLASKWSNWAIPQSSEGRHWFSYVDRSVTAELLERLTAEFLHIFDKCPSR 257
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Match: A0A5E4QTP7_9NEOP (CYCLIN domain-containing protein n=2 Tax=Obtectomera TaxID=104431 RepID=A0A5E4QTP7_9NEOP) HSP 1 Score: 96.3 bits (238), Expect = 1.310e-18 Identity = 62/217 (28.57%), Postives = 109/217 (50.23%), Query Frame = 2
Query: 431 WYFSPEELASLPSLQDNVSIDEEKILRKKTHQFIFDASKPLRLPLLAMSAAAHMCQRYFAQVSFRKIDRNDAAAAAIFLASKVEECRTKLDYVLRVTWAIRYNKDPAKFVLKPTDKEYEPYKDRVLKMENQLVNALGFDFMIEHPYNHYAYIYQYLVEEGWIREEQVEHALKQSVIIANMSLRGTMCLEHAPTIRARMGVYITLLCNNVPTPPGHKT 1081
WYF+ ++L + PS + + D+E R++ I D + L++ L ++ A R++A SF + RN AAAA+FLA+KVEE KL+YV++V + + + T ++Y+ ++ EN L+ LGFD I+HP+ H +V + + + A + +N TMCL++ PT+ A +++ +N G +T
Sbjct: 8 WYFTKDQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSFTQFHRNAIAAAALFLAAKVEEQPRKLEYVIKVAHVCLHRGEGVNAL---TSEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTH-------VVRTCHLVKAPKDLAQTSYFMASNSLHLTTMCLQYRPTVVACFCIHLASKWSNWQAATGSRT 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig261.7127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig261.7127.1 >prot_H-paniculata_contig261.7127.1 ID=prot_H-paniculata_contig261.7127.1|Name=mRNA_H-paniculata_contig261.7127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=707bp MVDTFEGRRSDKGWKDRGWYFSPEELASLPSLQDNVSIDEEKILRKKTHQback to top mRNA from alignment at H-paniculata_contig261:10843..18523- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig261.7127.1 ID=mRNA_H-paniculata_contig261.7127.1|Name=mRNA_H-paniculata_contig261.7127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7681bp|location=Sequence derived from alignment at H-paniculata_contig261:10843..18523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig261:10843..18523- >mRNA_H-paniculata_contig261.7127.1 ID=mRNA_H-paniculata_contig261.7127.1|Name=mRNA_H-paniculata_contig261.7127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4242bp|location=Sequence derived from alignment at H-paniculata_contig261:10843..18523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |