mRNA_H-paniculata_contig2609.7125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2609.7125.1
Unique NamemRNA_H-paniculata_contig2609.7125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: D7FIN1_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN1_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 6.050e-39
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:   58 MELCAVRDQGIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPPSKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTMEGS 372
            +++ +VRDQGIVVLVRIRP S  E+ QR  ++VQG TQL VP SK T +EKT +FDAVLP  TTQE+VY VAGPKLIQ++LQGFNATMIAYGQTGSGKT+TMEGS
Sbjct:   91 LDVASVRDQGIVVLVRIRPVSRSEQGQRCCLQVQGPTQLHVPASKTTASEKTCTFDAVLPHTTTQEEVYRVAGPKLIQNLLQGFNATMIAYGQTGSGKTFTMEGS 195
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A835Z0B7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.480e-26
Identity = 51/109 (46.79%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:   43 QQLDPMELCAVRDQGIVVLVRIRPKSDKERPQ--RTFMEVQGMTQLLVPPSKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTM 363
            +QL   +   V+++G+VVLVR+RP +DKE+ +  +  +++Q  TQL +P +K  P E+T ++DAVL E T+QE+VY++ GP+++   +QG++AT+ AYGQTGSGKT+TM
Sbjct:   34 EQLCNSKTFEVKEEGVVVLVRVRPSNDKEKTEGGKPVLDLQSSTQLRIPENKANPQERTFAYDAVLAEGTSQEEVYKLCGPRILDKAMQGYHATLFAYGQTGSGKTWTM 142
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A3L6V5P4_9STRA (Kinesin-like protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V5P4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.240e-16
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   85 GIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPP--SKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTME 366
             I  LVRI+P S     +RT + V G +  L PP  S+    +KT S D +LPE T+QE+V++     L+ +VL+G+N T+ AYGQTGSGKTYTM+
Sbjct:   67 NIRALVRIKPSSVGST-ERTCLSVDGASVSLTPPIASRAVFDKKTFSLDGILPESTSQEEVFQAVAVPLVANVLEGYNGTIFAYGQTGSGKTYTMQ 161
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A418ELJ2_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418ELJ2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.390e-16
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   85 GIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPP--SKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTME 366
             I  LVRI+P S     +RT + V G +  L PP  S+    +KT S D +LPE T+QE+V++     L+ +VL+G+N T+ AYGQTGSGKTYTM+
Sbjct:   67 NIRALVRIKPSSVGST-ERTCLSVDGASVSLTPPIASRAVFDKKTFSLDGILPESTSQEEVFQAVAVPLVANVLEGYNGTIFAYGQTGSGKTYTMQ 161
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A7R9CQK9_TIMCR (Kinesin-like protein n=7 Tax=Timema TaxID=61471 RepID=A0A7R9CQK9_TIMCR)

HSP 1 Score: 82.0 bits (201), Expect = 1.120e-15
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:   22 AQRNEDCQQLDPMELCAVRDQGIVVLVRIRPKSDKERPQR--TFMEVQGMTQLLVPPSKITPTE--KTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTMEGSRE 378
            AQ +  C  + P EL    +  I V+VRIRP S+KE   R    + +     + +        E  KT +FDAVL E ++QE VYE  G  +++ VL+G+N T+ AYGQTGSGKTYTMEG +E
Sbjct:    5 AQMDTSCLMIKP-EL--TNEDNIRVVVRIRPLSEKEIRSRFKNIIRIDHPNHISILNLTHNSDEHPKTFTFDAVLGEASSQEDVYECFGRPIVEKVLEGYNGTIFAYGQTGSGKTYTMEGVQE 124
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A8H7UHC6_9FUNG (Kinesin motor domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UHC6_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 5.240e-12
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   85 GIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPPSKITPTEK-----TMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTM 363
             I V +RIRP + +++ Q  F  +     L V  + ++  EK       +FD +    +TQEQ++   G +L++  L G+NAT++AYGQT SGKTYTM
Sbjct:   25 SIQVALRIRPLTSRDKSQPRFSSIDESDILKVNDNSVSVAEKGQKPKPFTFDCIFGPTSTQEQIFNEVGSRLVERFLNGYNATVLAYGQTSSGKTYTM 122
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A0S4ILK1_BODSA (Kinesin-like protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4ILK1_BODSA)

HSP 1 Score: 71.2 bits (173), Expect = 6.810e-12
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:   88 IVVLVRIRPKSDKERPQR-TFMEVQGMTQLLVPPSKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTMEG 369
            + V++R RP    E+  + T +E       +   S    T K+ SFD VL E +TQE V+E   P +++H L G +AT+ AYGQTGSGKT+T+EG
Sbjct:    4 VQVVIRCRPPLSGEQHMKCTRVEANETNNTIAVNSSKQDTAKSFSFDRVLSESSTQEDVFETISP-MVEHALDGMHATVFAYGQTGSGKTHTIEG 97
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: UPI001E69BD7F (kinesin-like protein KIF19 n=2 Tax=Mustelidae TaxID=9655 RepID=UPI001E69BD7F)

HSP 1 Score: 70.9 bits (172), Expect = 9.460e-12
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:   76 RDQGIVVLVRIRPKSDKERPQRTFM---EVQGMTQLLVPPSKITPT--------EKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTMEG 369
            +DQ + V +RIRP SD E  +   +   +V   T +L+ PS+            EKT +FDAVL +  +QE VY      L++ V+ G+N T+ AYG +G+GKTYTM G
Sbjct:    7 KDQPLTVALRIRPLSDTELEEGAAVIAHKVGDQTVVLMGPSEDPEDTLRTHRSREKTFTFDAVLDQHASQEDVYRATTQHLVEGVVSGYNVTVFAYGPSGAGKTYTMLG 115
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A8H7BI27_9FUNG (Kinesin motor domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BI27_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 2.460e-11
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   85 GIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPPSKIT--PTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTM 363
             + V +R+RP + ++R Q  F        +    + IT  P +K+ +FD +    +TQEQV+   G KL+   ++G+N T++AYGQT SGKTYTM
Sbjct:   39 AVQVALRVRPLTQQDRSQPRFSHSTESDVIKTFDNAITIVPHQKSFTFDYLFDTESTQEQVFNGVGSKLVDRFIEGYNVTILAYGQTSSGKTYTM 133
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BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Match: A0A834YNV3_9MAGN (Kinesin motor domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YNV3_9MAGN)

HSP 1 Score: 69.7 bits (169), Expect = 2.490e-11
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   79 DQGIVVLVRIRPKSDKERPQRTFMEVQGMTQLLVPPSKITPT-----EKTMSFDAVLPERTTQEQVYEVAGPKLIQHVLQGFNATMIAYGQTGSGKTYTMEG 369
            D  + VL+RIRP S  ER         G T+ L   S  T T     E   +FD ++ E  +QE++++VAG  ++++ + G+N+ M AYGQTGSGKTYTM G
Sbjct:  187 DHNVQVLIRIRPISAAERTSL------GYTRCLRQESSQTLTWLGHPETRFTFDHIVCETISQEELFKVAGLPMVENCMSGYNSCMFAYGQTGSGKTYTMMG 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2609.7125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIN1_ECTSI6.050e-3972.38Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z0B7_9STRA6.480e-2646.79P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3L6V5P4_9STRA6.240e-1646.88Kinesin-like protein (Fragment) n=4 Tax=Aphanomyce... [more]
A0A418ELJ2_9STRA6.390e-1646.88Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A7R9CQK9_TIMCR1.120e-1543.09Kinesin-like protein n=7 Tax=Timema TaxID=61471 Re... [more]
A0A8H7UHC6_9FUNG5.240e-1237.76Kinesin motor domain-containing protein n=1 Tax=Um... [more]
A0A0S4ILK1_BODSA6.810e-1242.11Kinesin-like protein n=1 Tax=Bodo saltans TaxID=75... [more]
UPI001E69BD7F9.460e-1239.45kinesin-like protein KIF19 n=2 Tax=Mustelidae TaxI... [more]
A0A8H7BI27_9FUNG2.460e-1137.89Kinesin motor domain-containing protein n=1 Tax=Ap... [more]
A0A834YNV3_9MAGN2.490e-1141.18Kinesin motor domain-containing protein n=1 Tax=Te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2609contigH-paniculata_contig2609:3422..5568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue8.4e-34
Seed eggNOG ortholog2880.D7FIN1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2609.7125.1prot_H-paniculata_contig2609.7125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2609 3422..5568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.52337-CDS-H-paniculata_contig2609:3421..35411622929778.52337-CDS-H-paniculata_contig2609:3421..3541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 3422..3541 -
1691481006.898694-CDS-H-paniculata_contig2609:3421..35411691481006.898694-CDS-H-paniculata_contig2609:3421..3541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 3422..3541 -
1622929778.535798-CDS-H-paniculata_contig2609:4207..42941622929778.535798-CDS-H-paniculata_contig2609:4207..4294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 4208..4294 -
1691481006.9094043-CDS-H-paniculata_contig2609:4207..42941691481006.9094043-CDS-H-paniculata_contig2609:4207..4294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 4208..4294 -
1622929778.54684-CDS-H-paniculata_contig2609:5397..55681622929778.54684-CDS-H-paniculata_contig2609:5397..5568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 5398..5568 -
1691481006.920141-CDS-H-paniculata_contig2609:5397..55681691481006.920141-CDS-H-paniculata_contig2609:5397..5568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 5398..5568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2609.7125.1

>prot_H-paniculata_contig2609.7125.1 ID=prot_H-paniculata_contig2609.7125.1|Name=mRNA_H-paniculata_contig2609.7125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
NFGGITGAQRNEDCQQLDPMELCAVRDQGIVVLVRIRPKSDKERPQRTFM
EVQGMTQLLVPPSKITPTEKTMSFDAVLPERTTQEQVYEVAGPKLIQHVL
QGFNATMIAYGQTGSGKTYTMEGSRE
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mRNA from alignment at H-paniculata_contig2609:3422..5568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2609.7125.1 ID=mRNA_H-paniculata_contig2609.7125.1|Name=mRNA_H-paniculata_contig2609.7125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2147bp|location=Sequence derived from alignment at H-paniculata_contig2609:3422..5568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTCGGAGGCATCACTGGGGCGCAGCGAAATGAAGACTGCCAACAGTT
GGACCCGATGGAGCTGTGCGCCGTTCGCGATCAGGGTATCGTCGTGCTGG
TGAGGATTCGGCCTAAATCGGACAAGGAGCGGCCGCAGCGAACTTTCATG
GAAGTGCAAGGAATGACACAGGTGAGGCGCAGTGTGTCAACTGCGGGCTT
TGACGCGGGACATACGTGTTTTCGTGTGCAAAAGGTTTTCCTTGCCATTT
GTGCGGGTGTATTTGGTATTAGGTTTATAGAAAGCACGTATAGTAATGAC
TGCACATCATCATGCAGTTCTCGTTTGGTGAACCAACCTGACTCGGTAAA
ACGGGTCACCGGCGCTCTCTGCGCTTGCTGCACGGGCGCGCGCGTTGCTC
TGCGGCGGGACGCCAACCGTTCGATTAAGGCGCGTTTCGTTTTTTTTGGA
CGATGGTTGTGTGGTCGTTCTTGCGAAAGAAGGGAGGATGAGTGTGATCT
GCAATACTGCGTTTGTTCGGTGTAAGCTGCAGGATCTTTTCTTGCGGATT
TGGAAAGCGCTACGAAGCGCTGACACACGACTTTCCAGAGGAACGCTAAA
CTCCGTACAGTAGATAACTGCGGGATCCGATGTATACCAGTGGTAGGACA
GGTGCAAACGTTCGTGATTTCAAGCAGATACCCTCGGTTATGCGGAGAGG
GCGGTGTCAGCAGGCTGCTTTGGGTTTGTGCCCGACTCCGATTTCACTCA
TACATGCGGGTAAAATTACGGTGGCACGAACAGGGAGCACGAGCATGACA
AAGCGAGGTAGCACTAATGCTCTGCTCTGTTTTCTTCTACACAATGATTG
GTTGGTGTCCGGATTACCGTATCCGCAGAAGAACAGGCGTTTCCCGGGTG
GGGATTGAGACATACGCTAGGTAGCACACGCAGCATACTCTGGGAAAAGA
TCTTGTGTTGTTCATCTGAAAAAAGAAACACGGTGAATCTGTGAGCGGCA
TTCCGGGAAGGGGAAACGGGGAAGCACCGAGAGCAACTATCAAGAAATTG
AAAGTTGAAAACGCTTAATAAATCCAACGCTGCTGAATGAATTGTCTGAA
ATAAGCCAAAATAGTTAGGGGAAAGGGGGGGGCAGCACTGAGTTACGAGC
ATACTATTTTCCCGTCTCTCTTCCAGACCATGCGCCCCGTATACAGCCTA
CAGTGCGTCTGAGCTAACGCCGTGTGTCTCGTGTGCATCGCGTCTCTCGC
ACTGGCGTGTTTGTGTATACGCAGCTGCTCGTACCTCCGAGCAAGATCAC
GCCGACGGAGAAAACCATGTCGTTCGACGCCGTGCTACCTGAACGAACCA
CTCAGGAGCAGGTATGCGTATCCCCTACGGTTGAAACTCCTAGCTGACGC
CGTACGCGAGCACAGGTAACATTACCATGGCTACGCCCTCGCAGTTCCAT
ATCTTATCCTCTTACAAGTAGACGTTCAGCCAGAGTTCATGACTCCCCGA
AGTAGAACGCTGTGCTCCCATGTAGGCACACAATAACTCAATAAGGAGGC
TTTTTAGAAGTTACCCAAGTAAACAGAGTAGGAAAAATTCAAATGCTCCG
AAACGATGATGGTCATCATCCATCGAGACCTTGGCGTTTCAAGTAATACG
GACGCTTGGGATTCATTGGGAAGAGGGAATAGAGCTGTGCGACTCTGGCG
CAGTAGTGCGCTCGCTCTTGATGTCTGTATCCTGTGGTACGATAGGCACC
ACGAATCTTTCCGGGAACGTTTGAAGTCATACATGACTTGGAAGTTTGCC
CAATATGCGTAGGCAAATAAACACAGCATTGTGGCGTATTGTGATGTCTG
TTGTTCGTAACCGCCCTTTGAGTGTGAGTGGGTGAGTGGGTGCGGAGGGT
CGAAAGGGTAGTTATTGATGTCTCTATTCATCCTGTCGCCTGGCTCTCCC
TGATTCTCGGCTGATCTCTGCACTTGTTCCCTCTGTCGGGGTGATTTTTT
TGTACTCATACATGTATGTACGTATAGGTGTACGAGGTAGCTGGCCCGAA
GTTAATTCAGCATGTTCTGCAGGGGTTTAACGCGACCATGATCGCCTACG
GTCAGACAGGATCGGGAAAGACGTACACTATGGAGGGCTCGAGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2609:3422..5568-

>mRNA_H-paniculata_contig2609.7125.1 ID=mRNA_H-paniculata_contig2609.7125.1|Name=mRNA_H-paniculata_contig2609.7125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2609:3422..5568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTCGGAGGCATCACTGGGGCGCAGCGAAATGAAGACTGCCAACAGTT
GGACCCGATGGAGCTGTGCGCCGTTCGCGATCAGGGTATCGTCGTGCTGG
TGAGGATTCGGCCTAAATCGGACAAGGAGCGGCCGCAGCGAACTTTCATG
GAAGTGCAAGGAATGACACAGAACTTCGGAGGCATCACTGGGGCGCAGCG
AAATGAAGACTGCCAACAGTTGGACCCGATGGAGCTGTGCGCCGTTCGCG
ATCAGGGTATCGTCGTGCTGGTGAGGATTCGGCCTAAATCGGACAAGGAG
CGGCCGCAGCGAACTTTCATGGAAGTGCAAGGAATGACACAGCTGCTCGT
ACCTCCGAGCAAGATCACGCCGACGGAGAAAACCATGTCGTTCGACGCCG
TGCTACCTGAACGAACCACTCAGGAGCAGCTGCTCGTACCTCCGAGCAAG
ATCACGCCGACGGAGAAAACCATGTCGTTCGACGCCGTGCTACCTGAACG
AACCACTCAGGAGCAGGTGTACGAGGTAGCTGGCCCGAAGTTAATTCAGC
ATGTTCTGCAGGGGTTTAACGCGACCATGATCGCCTACGGTCAGACAGGA
TCGGGAAAGACGTACACTATGGAGGGCTCGAGAGAGGTGTACGAGGTAGC
TGGCCCGAAGTTAATTCAGCATGTTCTGCAGGGGTTTAACGCGACCATGA
TCGCCTACGGTCAGACAGGATCGGGAAAGACGTACACTATGGAGGGCTCG
AGAGAG
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