mRNA_H-paniculata_contig26084.7123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26084.7123.1
Unique NamemRNA_H-paniculata_contig26084.7123.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26084.7123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26084contigH-paniculata_contig26084:3092..3423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26084.7123.1prot_H-paniculata_contig26084.7123.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26084 3105..3416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.4015718-UTR-H-paniculata_contig26084:3091..31041622929778.4015718-UTR-H-paniculata_contig26084:3091..3104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26084 3092..3104 +
1691481006.8590088-UTR-H-paniculata_contig26084:3091..31041691481006.8590088-UTR-H-paniculata_contig26084:3091..3104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26084 3092..3104 +
1622929778.431266-UTR-H-paniculata_contig26084:3416..34231622929778.431266-UTR-H-paniculata_contig26084:3416..3423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26084 3417..3423 +
1691481006.8792517-UTR-H-paniculata_contig26084:3416..34231691481006.8792517-UTR-H-paniculata_contig26084:3416..3423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26084 3417..3423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.4174676-CDS-H-paniculata_contig26084:3104..34161622929778.4174676-CDS-H-paniculata_contig26084:3104..3416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26084 3105..3416 +
1691481006.868757-CDS-H-paniculata_contig26084:3104..34161691481006.868757-CDS-H-paniculata_contig26084:3104..3416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26084 3105..3416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26084.7123.1

>prot_H-paniculata_contig26084.7123.1 ID=prot_H-paniculata_contig26084.7123.1|Name=mRNA_H-paniculata_contig26084.7123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSSCISMCPGPSMTANNTRESNGQGCVPYFKCPLILKLRRILSVFCENHL
QIFMFVRGGYKTCTVERASCFTDILAHLETFFSSPNDIVFGVARWPIRQY
KFL*
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mRNA from alignment at H-paniculata_contig26084:3092..3423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26084.7123.1 ID=mRNA_H-paniculata_contig26084.7123.1|Name=mRNA_H-paniculata_contig26084.7123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=332bp|location=Sequence derived from alignment at H-paniculata_contig26084:3092..3423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGAGTTTCAGAATGAGCTCGTGTATTTCCATGTGCCCCGGACCATCCA
TGACTGCTAATAATACTCGTGAATCGAATGGACAGGGGTGTGTACCTTAT
TTCAAGTGTCCGCTCATTCTGAAACTCAGGCGAATACTTTCAGTGTTTTG
CGAAAATCATTTGCAAATATTCATGTTCGTCCGGGGGGGGTACAAGACCT
GCACTGTCGAGAGAGCAAGTTGTTTTACCGACATACTTGCACATCTTGAA
ACGTTTTTTTCATCCCCCAATGACATAGTTTTCGGTGTCGCGAGATGGCC
TATTAGACAGTACAAGTTTTTGTGAATGTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26084:3092..3423+

>mRNA_H-paniculata_contig26084.7123.1 ID=mRNA_H-paniculata_contig26084.7123.1|Name=mRNA_H-paniculata_contig26084.7123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig26084:3092..3423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCGTGTATTTCCATGTGCCCCGGACCATCCATGACTGCTAATAA
TACTCGTGAATCGAATGGACAGGGGTGTGTACCTTATTTCAAGTGTCCGC
TCATTCTGAAACTCAGGCGAATACTTTCAGTGTTTTGCGAAAATCATTTG
CAAATATTCATGTTCGTCCGGGGGGGGTACAAGACCTGCACTGTCGAGAG
AGCAAGTTGTTTTACCGACATACTTGCACATCTTGAAACGTTTTTTTCAT
CCCCCAATGACATAGTTTTCGGTGTCGCGAGATGGCCTATTAGACAGTAC
AAGTTTTTGTGAATGAGCTCGTGTATTTCCATGTGCCCCGGACCATCCAT
GACTGCTAATAATACTCGTGAATCGAATGGACAGGGGTGTGTACCTTATT
TCAAGTGTCCGCTCATTCTGAAACTCAGGCGAATACTTTCAGTGTTTTGC
GAAAATCATTTGCAAATATTCATGTTCGTCCGGGGGGGGTACAAGACCTG
CACTGTCGAGAGAGCAAGTTGTTTTACCGACATACTTGCACATCTTGAAA
CGTTTTTTTCATCCCCCAATGACATAGTTTTCGGTGTCGCGAGATGGCCT
ATTAGACAGTACAAGTTTTTGTGA
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