mRNA_H-paniculata_contig2607.7119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2607.7119.1
Unique NamemRNA_H-paniculata_contig2607.7119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5JHP4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.370e-19
Identity = 48/121 (39.67%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  239 GGGAIC*HSRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            GGGA+   SRTQ+     T+EAEYVAR +++ E LFLRQ+  F+ P++    I +  DN+ A+++A N  S+  + H+DV+HH +R+ VE   +SV+ +      A+  TK+L K+ F  H
Sbjct:  432 GGGAVSWFSRTQKCVTLSTTEAEYVARGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQRAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYHRADFLTKSLSKDAFESH 552
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5JNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.380e-18
Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 2 
Query:  155 RRFCSTCQGPQT--WAYTAGVRCPAERYGWGGGAIC*HSRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            R     C  P+   W    G+   A    W  G +   SRTQ+     T+EAEYVA  +++NE LFLRQ+  F+ P+     I V   N+GA+++A+N   +  + H+DV+HH +R  VE   +S+  +    QHA+  TKA+ K  F  H
Sbjct:   95 RAVARYCASPKMVHWKAALGILGRASDV-WVCGCVTWFSRTQKCVTLSTTEAEYVAIADVLNEVLFLRQLWRFMLPDAGMPCIPVFEGNQGAIQIAHNPIVNSNSKHIDVRHHYIRGLVERKEISMTHVPTQFQHADFLTKAISKESFALH 244
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.890e-18
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            SRTQ+  +  TSEAEY+A  + + E LF+  +  F+ P +    I V+ DN+GA+ +A N  SS ++ H+DV+HH +R+  E G + V  +   EQHA+I TKAL ++LF  H
Sbjct:  137 SRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 249
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-17
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            SRTQ+  A  TSEAEY+A  + + E LF   +  F+ P   +  I V+ DN+GA+ +A+N  SS +  H+DV+HH +R   E G + +  +   EQHA+I TKAL + LF  H
Sbjct:  112 SRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVH 224
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.160e-17
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            SRTQ+  +  TSEAEY+A  + + E LF+  +  F+ P +    I V+ DN+GA+ +A N  SS ++ H+DV+HH +R+  E G + V  +   EQHA+I TKAL ++LF  H
Sbjct: 1280 SRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1392
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-17
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 2 
Query:  239 GGGAIC*HSRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKHVE 607
            GGGA+   SRTQ+     T+EAEYVA  +++N+ LFL Q+  F+ P++    I V  DN+GA+++  N  S+  + H+DV HH +R+  E   +SV+ + +  Q A+I TK+L  +    HV+
Sbjct: 1204 GGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISNSNSKHIDVWHHFLRELEERKEISVIHVPLPYQRADILTKSLPTDTPESHVD 1326
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.020e-16
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            SRTQ+  +  TSE+EY+A  + + E LF+  +  F+ P +    I V+ DN+GA+ +A N  SS ++ H+DV+HH +R+  E G + V  +   EQHA+I TKAL ++LF  H
Sbjct: 1070 SRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1182
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-16
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            SRTQ+  A  TSEAEY+A  + + E LF   +  F+ P   +  I V+ DN+GA+ +A+N  SS +  H+DV+HH +R   E G + +  +   EQHA+I TKAL + LF  H
Sbjct:  558 SRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVH 670
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.790e-16
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            S+TQ+  +  TSEAEY+A  + + E LF+  +  F+ P      I V+ DN+GA+ +A N  SS ++ H+DV+HH +R+  E G + V  +   EQHA+I TKAL ++LF  H
Sbjct:  374 SKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 486
[Close]
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-16
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:  263 SRTQEVTAARTSEAEYVARMEIMNEYLFLRQVQIFIAPELDNYAITVMADNKGALKMANNEHSSRKT*HVDVKHHIVRDAVETGHVSVLKMGMGEQHAEISTKALEKNLFGKH 601
            S TQ+  +  TSEAEY+A  + + E LF+  +  F+ P      I V  DN+GA+ +A N  SS ++ H+DV+HH +R+  E G + V  +   EQHA+I TKAL +NLF  H
Sbjct:  431 SWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVH 543
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2607.7119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP4_9PHAE3.370e-1939.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNU8_9PHAE2.380e-1835.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE3.890e-1841.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW47_9PHAE1.340e-1741.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.160e-1741.59Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6V8_9PHAE5.610e-1738.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3I1_9PHAE1.020e-1640.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE1.700e-1641.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.790e-1640.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JP36_9PHAE1.800e-1641.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2607contigH-paniculata_contig2607:9765..10445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score66.2
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog7070.TC009115-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size613
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2607.7119.1prot_H-paniculata_contig2607.7119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2607 9765..10276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.900866-CDS-H-paniculata_contig2607:9764..99631622929777.900866-CDS-H-paniculata_contig2607:9764..9963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2607 9765..9963 +
1691481006.6976094-CDS-H-paniculata_contig2607:9764..99631691481006.6976094-CDS-H-paniculata_contig2607:9764..9963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2607 9765..9963 +
1622929777.9162762-CDS-H-paniculata_contig2607:10031..102761622929777.9162762-CDS-H-paniculata_contig2607:10031..10276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2607 10032..10276 +
1691481006.7104433-CDS-H-paniculata_contig2607:10031..102761691481006.7104433-CDS-H-paniculata_contig2607:10031..10276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2607 10032..10276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.9327543-UTR-H-paniculata_contig2607:10276..104451622929777.9327543-UTR-H-paniculata_contig2607:10276..10445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2607 10277..10445 +
1691481006.7222319-UTR-H-paniculata_contig2607:10276..104451691481006.7222319-UTR-H-paniculata_contig2607:10276..10445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2607 10277..10445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2607.7119.1

>prot_H-paniculata_contig2607.7119.1 ID=prot_H-paniculata_contig2607.7119.1|Name=mRNA_H-paniculata_contig2607.7119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
EEAQETRVFPYREAVGALMWAATMTRLDTAYAVRTVAKFCKNPEMAHKKA
VEKILQYVSRTADLGIHSRRSVSGGTVRLGGGRDLLALEDPGSDSGKDIR
GGIRRTDGDHERISVPPSGTDIHRAGTGQLRNHRHGGQQRCTQDGQQ*
back to top

mRNA from alignment at H-paniculata_contig2607:9765..10445+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2607.7119.1 ID=mRNA_H-paniculata_contig2607.7119.1|Name=mRNA_H-paniculata_contig2607.7119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=681bp|location=Sequence derived from alignment at H-paniculata_contig2607:9765..10445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGCACAGGAAACTCGAGTTTTCCCGTACAGGGAGGCAGTGGGGGC
ACTCATGTGGGCGGCGACGATGACGCGGCTTGATACCGCGTACGCCGTTC
GCACTGTCGCGAAGTTCTGCAAAAACCCCGAAATGGCACACAAGAAAGCT
GTGGAGAAGATTCTGCAGTACGTGTCAAGGACCGCAGACTTGGGCATACG
TATGGCGACCAAAACTCTGAGATGAAGATGCTGGCATATGCGGACTCGGA
CTGCGCGGCATGCCCAGACAGCCGGCGTTCGGTGTCCGGCGGAACGGTAC
GGTTGGGGGGGGGGCGCGATCTGCTAGCACTCGAGGACCCAGGAAGTGAC
AGCGGCAAGGACATCAGAGGCGGAATACGTCGCACGGATGGAGATCATGA
ACGAATATCTGTTCCTCCGTCAGGTACAGATATTCATCGCGCCGGAACTG
GACAATTACGCAATCACCGTCATGGCGGACAACAAAGGTGCACTCAAGAT
GGCCAACAATGAACACAGTAGTAGGAAGACTTGACACGTTGACGTGAAGC
ATCACATCGTTCGGGATGCGGTCGAGACCGGACACGTCAGCGTACTCAAA
ATGGGAATGGGGGAACAGCACGCGGAAATTTCGACTAAGGCATTGGAGAA
GAACTTGTTTGGAAAGCATGTTGAAACTCTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2607:9765..10445+

>mRNA_H-paniculata_contig2607.7119.1 ID=mRNA_H-paniculata_contig2607.7119.1|Name=mRNA_H-paniculata_contig2607.7119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig2607:9765..10445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGCACAGGAAACTCGAGTTTTCCCGTACAGGGAGGCAGTGGGGGC
ACTCATGTGGGCGGCGACGATGACGCGGCTTGATACCGCGTACGCCGTTC
GCACTGTCGCGAAGTTCTGCAAAAACCCCGAAATGGCACACAAGAAAGCT
GTGGAGAAGATTCTGCAGTACGTGTCAAGGACCGCAGACTTGGGCATACG
AAGAAGCACAGGAAACTCGAGTTTTCCCGTACAGGGAGGCAGTGGGGGCA
CTCATGTGGGCGGCGACGATGACGCGGCTTGATACCGCGTACGCCGTTCG
CACTGTCGCGAAGTTCTGCAAAAACCCCGAAATGGCACACAAGAAAGCTG
TGGAGAAGATTCTGCAGTACGTGTCAAGGACCGCAGACTTGGGCATACAC
AGCCGGCGTTCGGTGTCCGGCGGAACGGTACGGTTGGGGGGGGGGCGCGA
TCTGCTAGCACTCGAGGACCCAGGAAGTGACAGCGGCAAGGACATCAGAG
GCGGAATACGTCGCACGGATGGAGATCATGAACGAATATCTGTTCCTCCG
TCAGGTACAGATATTCATCGCGCCGGAACTGGACAATTACGCAATCACCG
TCATGGCGGACAACAAAGGTGCACTCAAGATGGCCAACAATGAACAGCCG
GCGTTCGGTGTCCGGCGGAACGGTACGGTTGGGGGGGGGGCGCGATCTGC
TAGCACTCGAGGACCCAGGAAGTGACAGCGGCAAGGACATCAGAGGCGGA
ATACGTCGCACGGATGGAGATCATGAACGAATATCTGTTCCTCCGTCAGG
TACAGATATTCATCGCGCCGGAACTGGACAATTACGCAATCACCGTCATG
GCGGACAACAAAGGTGCACTCAAGATGGCCAACAATGA
back to top