mRNA_H-paniculata_contig26061.7116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26061.7116.1
Unique NamemRNA_H-paniculata_contig26061.7116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: D8LL30_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL30_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.870e-46
Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 1
Query:   28 RCTRVVGNLLKGS-AESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSK-FKKTAREGLQAHQ 354
            +CTR+V  LL G  A  G LPGAD+FLPALILLVKRANPP +HS LEF+QSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDAS+LSIAH DFERGL + F+++AR GLQAHQ
Sbjct:  347 KCTRIVAGLLTGDRAAGGALPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGLIQGFQESARVGLQAHQ 457          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A7S2W9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9D2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.940e-24
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   28 RCTRVVGNLLKGSAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKTAREGL 342
            RC++ + ++L  +A  G LPGAD+FLPA+IL+VK+ANP  +HS L FIQ+F    +LLSEAGY+ T L SAV FL++VDA+ L+I   +FE G+ + ++ AR  +
Sbjct:  321 RCSKSIASVLT-TAMRGKLPGADDFLPAMILVVKKANPSRLHSNLTFIQTFAPQHRLLSEAGYIFTHLSSAVAFLQDVDANALTITSEEFEAGIQRSQEQARRDM 424          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A7S2G2K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2K9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.970e-23
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   73 SGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKTAREGL 342
            S  LPGAD+FLPA+IL+VKRANPP +HS L+ I  +  P +L+SEAGYV T L SAV FL  +DA+ LSI  +DF+RG+ + ++ AR+ +
Sbjct:  203 SHALPGADDFLPAMILVVKRANPPTLHSDLKLIYQYSAPVRLMSEAGYVFTHLQSAVAFLRTLDATALSITPSDFDRGMRRCQEQARQDM 292          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A5B7AL41_DAVIN (VPS9 domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AL41_DAVIN)

HSP 1 Score: 91.3 bits (225), Expect = 3.860e-21
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   31 CTRVVGNLL-KGSAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKTARE 336
            C RV+ NLL   S     +PGAD+FLP LI ++ +ANPP +HS L+FIQ +R  ++L+SEA Y  T LVSA  F+ ++DA  LSI  T+F+  +   +   RE
Sbjct:   20 CCRVINNLLLNASMSENRVPGADDFLPVLIYVMIKANPPQLHSNLKFIQLYRRQAELVSEAAYYFTNLVSAKSFIVDLDAKSLSIDETEFQESMQAARLVIRE 122          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A1W0A4L5_9STRA (VPS9 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4L5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.160e-21
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   67 AESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKTARE 336
            A  G  PGADEFLPALI  + +ANPPN+HS + +IQ++R PSKLLSE GY  T +VS+V FLE++D S L+I   +F+ GL+   ++  E
Sbjct:  301 AHHGRYPGADEFLPALIYTILKANPPNLHSIVHYIQTYRHPSKLLSEPGYFFTHIVSSVSFLEQLDDSGLTITPEEFQAGLAATTQSVSE 390          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A067CQF9_SAPPC (VPS9 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQF9_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 8.280e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 FPPHLAPNRCTRVVGNLLKG-----SAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKK 324
             P +L+P R    + ++ +       A  G  PGADEFLPALI  + +ANP ++HS +++IQ++R PSKLLSE GY  T +VS+V FLE++D S LSI+  DF  GL+  K+
Sbjct:  289 LPRYLSPRRMMTCILHVCQELTHLLRAHHGRYPGADEFLPALIYTILKANPVHLHSVVQYIQNYRHPSKLLSEPGYFFTHVVSSVSFLEQLDDSGLSISPEDFHAGLAATKE 400          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A6G0XID1_9STRA (VPS9 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XID1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.190e-20
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    4 FPPHLAPNR--------CTRVVGNLLKGSAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKT 327
             P +L+P R        C  +  NLLK     G  PGAD+FLPALI  + +ANP ++HS + +IQ++R PSKL+SE GY LT LVS++ FLE +D S LSI   +F RGL   KK+
Sbjct:  281 LPRYLSPRRQMSCLLQVCEELT-NLLKDY--HGQYPGADDFLPALIYTLLKANPSHLHSTVAYIQTYRHPSKLVSEPGYFLTHLVSSLSFLEHLDDSALSITAEEFHRGLEDSKKS 393          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A485KP50_9STRA (Aste57867_9763 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KP50_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.010e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 FPPHLAPNR-------CTRVVGNLLKGSAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKT 327
             P +L+P R         + + +LLK  A  G  PGADEFLPALI  + +ANP ++HS + +IQ+FR PSKL+SE GY  T +VS++ FLE +D S LSI   +F  GL++ K++
Sbjct:  311 LPRYLSPRRQMDCILGVCQALTDLLK--AHLGKYPGADEFLPALIYTILKANPRHLHSTVAYIQTFRHPSKLMSEPGYFFTHVVSSLSFLEHLDDSGLSITPEEFHTGLAQTKRS 423          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: A0A024TYA3_9STRA (VPS9 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYA3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.190e-20
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    4 FPPHLAPNR---CTRVV----GNLLKGSAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGL 309
             P +L+P R   C   V     +LLK     G  PGADEFLPALI  + +ANPP++HS +E+IQ++R PSKLLSE GY  T LVS++ FL+ +D S LSI+  +F  GL
Sbjct:  305 LPRYLSPRRQMACILQVCHDLTHLLKDHL-GGKYPGADEFLPALIYTILKANPPHLHSTVEYIQTYRHPSKLLSEPGYFFTHLVSSLSFLDHLDDSGLSISAEEFHDGL 412          
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Match: G4ZTE1_PHYSP (VPS9 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZTE1_PHYSP)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-19
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   64 SAESGLLPGADEFLPALILLVKRANPPNVHSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFERGLSKFKKTARE 336
            S   G  P ADEFLPALI +V RANP  +   + +I  +R PSKL+SE GY  T LVS+V FLEEVD SLL+I+  +F+ GL + K++ R+
Sbjct:  374 SQNGGRFPSADEFLPALIYVVLRANPAELKRNVAYILEYRSPSKLVSEPGYFFTHLVSSVAFLEEVDGSLLTISAEEFDEGLRRSKESLRQ 464          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26061.7116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL30_ECTSI7.870e-4678.38VPS9 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2W9D2_9STRA9.940e-2449.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G2K9_9STRA5.970e-2354.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A5B7AL41_DAVIN3.860e-2145.63VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1W0A4L5_9STRA4.160e-2152.22VPS9 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A067CQF9_SAPPC8.280e-2145.54VPS9 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A6G0XID1_9STRA1.190e-2047.41VPS9 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A485KP50_9STRA6.010e-2045.22Aste57867_9763 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TYA3_9STRA8.190e-2049.54VPS9 domain-containing protein n=2 Tax=Aphanomyces... [more]
G4ZTE1_PHYSP1.110e-1951.65VPS9 domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26061contigH-paniculata_contig26061:2336..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.8e-39
Seed eggNOG ortholog2880.D8LL30
Preferred nameVPS9
KEGG koko:K20131
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0003674,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0042886,GO:0043130,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0098772
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.6608973-CDS-H-paniculata_contig26061:2335..25301622929777.6608973-CDS-H-paniculata_contig26061:2335..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26061 2336..2530 -
1691481006.6225212-CDS-H-paniculata_contig26061:2335..25301691481006.6225212-CDS-H-paniculata_contig26061:2335..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26061 2336..2530 -
1622929777.6733236-CDS-H-paniculata_contig26061:3157..33311622929777.6733236-CDS-H-paniculata_contig26061:3157..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26061 3158..3331 -
1691481006.6339116-CDS-H-paniculata_contig26061:3157..33311691481006.6339116-CDS-H-paniculata_contig26061:3157..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26061 3158..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26061.7116.1prot_H-paniculata_contig26061.7116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26061 2336..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26061.7116.1

>prot_H-paniculata_contig26061.7116.1 ID=prot_H-paniculata_contig26061.7116.1|Name=mRNA_H-paniculata_contig26061.7116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MFPPHLAPNRCTRVVGNLLKGSAESGLLPGADEFLPALILLVKRANPPNV
HSCLEFIQSFRDPSKLLSEAGYVLTQLVSAVCFLEEVDASLLSIAHTDFE
RGLSKFKKTAREGLQAHQLQARV
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mRNA from alignment at H-paniculata_contig26061:2336..3331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26061.7116.1 ID=mRNA_H-paniculata_contig26061.7116.1|Name=mRNA_H-paniculata_contig26061.7116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=996bp|location=Sequence derived from alignment at H-paniculata_contig26061:2336..3331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCCCCGCATCTCGCTCCTAACAGGTGCACGCGGGTCGTCGGGAA CTTGCTGAAGGGCAGCGCAGAGAGCGGGCTCCTACCCGGGGCAGACGAAT TTCTTCCCGCTCTAATCTTGCTCGTGAAGAGGGCTAATCCACCCAACGTG CACAGCTGCCTTGAATTCATCCAGGTATGATGTATGCGTATGTGTACGTG GAGGGTACTTACCTTGCTACGTTCCGGTGAAAGCCGTCTCGAGGCACGGG ATCCCAGAACGCTAGGGATACGTTAACTCTCATGGTACCGGACTCTGTAT AATCCCTGCCTAGGAATGATGCCCTGCACATTTGGTTATGACACAAAAGG CATGCAAGCGTAGCACCTTGTGCTTCCTTGCCCCCCCTCGCACACACACA TACACACACACACACACGCTGGGTAGAGATGCGTTTATCTTGAATACACC CTTATTTCGTAGTTCACAGGGTATAACATGCCCCCGAGATAAACAACATT TTGGGCGTTATTACGTGGGGGTGGTGTTCGTGTCGGGAGGAGGGGGGAAG GGGTCCCCGTGTACTCCGACATGCTGCTATACCCTCGAAACTACGAGTAT ATCACTACCCACTCATAAACCCAACTCAATCCAATTCGCCTACCCAGCCA ACCGAGCGCACCTATCCACCTCATTGCTCTCTTGCTCCCCTCCGTCTCTC TCTGTCTCGCTCTCTGTCTCTCTCTCTGTCTCTTTCTGTCTCTCTCTGTC TCTCTGTCTCTCTCTCTCTCTCTGTGTGTCTCTCTCGCTACTCTCAAGCA GAGCTTCCGGGACCCATCCAAACTGCTGTCCGAAGCGGGGTACGTGCTGA CACAGCTAGTGAGCGCGGTGTGCTTCTTGGAGGAGGTGGACGCGTCCTTG CTCAGCATAGCGCACACTGACTTCGAGCGGGGCCTCAGCAAGTTCAAGAA GACCGCTCGGGAAGGGCTGCAGGCACACCAGCTGCAGGCGAGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig26061:2336..3331-

>mRNA_H-paniculata_contig26061.7116.1 ID=mRNA_H-paniculata_contig26061.7116.1|Name=mRNA_H-paniculata_contig26061.7116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig26061:2336..3331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCCCCGCATCTCGCTCCTAACAGGTGCACGCGGGTCGTCGGGAA
CTTGCTGAAGGGCAGCGCAGAGAGCGGGCTCCTACCCGGGGCAGACGAAT
TTCTTCCCGCTCTAATCTTGCTCGTGAAGAGGGCTAATCCACCCAACGTG
CACAGCTGCCTTGAATTCATCCAGATGTTTCCCCCGCATCTCGCTCCTAA
CAGGTGCACGCGGGTCGTCGGGAACTTGCTGAAGGGCAGCGCAGAGAGCG
GGCTCCTACCCGGGGCAGACGAATTTCTTCCCGCTCTAATCTTGCTCGTG
AAGAGGGCTAATCCACCCAACGTGCACAGCTGCCTTGAATTCATCCAGAG
CTTCCGGGACCCATCCAAACTGCTGTCCGAAGCGGGGTACGTGCTGACAC
AGCTAGTGAGCGCGGTGTGCTTCTTGGAGGAGGTGGACGCGTCCTTGCTC
AGCATAGCGCACACTGACTTCGAGCGGGGCCTCAGCAAGTTCAAGAAGAC
CGCTCGGGAAGGGCTGCAGGCACACCAGCTGCAGGCGAGGGTGAGCTTCC
GGGACCCATCCAAACTGCTGTCCGAAGCGGGGTACGTGCTGACACAGCTA
GTGAGCGCGGTGTGCTTCTTGGAGGAGGTGGACGCGTCCTTGCTCAGCAT
AGCGCACACTGACTTCGAGCGGGGCCTCAGCAAGTTCAAGAAGACCGCTC
GGGAAGGGCTGCAGGCACACCAGCTGCAGGCGAGGGTG
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