prot_H-paniculata_contig26055.7115.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26055.7115.1
Unique Nameprot_H-paniculata_contig26055.7115.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length148
Homology
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.480e-28
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 0
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVSTMCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 148
            AW  L+  +DG+TKEARR C  KL  T M+SG+ P DFL  MD  R  LE+M + IPDE YE+++LR L  EY  +R  S + R F L +IR  +  M  D LSR ++   VAGRGVAM A         +++ C  C++ GH   +C
Sbjct:   63 AWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.380e-8
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 0
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVST---MCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 148
            AW A   ++D  T+EARR CH++L      +G+ P DF       +  L  + + +    Y +I+L  L    E   I     RD N+A +  + +T   +  D  SR  +  +V+GRG AM A+  SD        C  C++ G  +RDC
Sbjct:  115 AWRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRD-NIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSD-------QCHRCKEYGPFQRDC 257          
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-7
Identity = 42/150 (28.00%), Postives = 69/150 (46.00%), Query Frame = 0
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAE--YERVRIASCEKRDFNLADIRHIVSTMCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 148
            AW AL  ++D  T+EARR CH++L      +G  P DF       +  L+ + + + D  Y +I+L  L     +E +R         ++  ++   +    D  SR  +  +V+GRG AM  +  +D        C  C+  GH +RDC
Sbjct:   95 AWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVASDTD-------QCRRCKAYGHFQRDC 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE2.480e-2843.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE2.380e-830.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KC00_9PHAE1.510e-728.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..85
e-value: 9.4E-10
score: 38.3
NoneNo IPR availableGENE3D4.10.60.10coord: 112..148
e-value: 4.0E-5
score: 25.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 134..148
e-value: 5.1E-4
score: 20.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 135..148
score: 9.208
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 122..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26055contigH-paniculata_contig26055:2840..3283 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26055.7115.1mRNA_H-paniculata_contig26055.7115.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26055 2840..3283 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26055.7115.1 ID=prot_H-paniculata_contig26055.7115.1|Name=mRNA_H-paniculata_contig26055.7115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLE
EMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVSTMCT
DYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf