mRNA_H-paniculata_contig26055.7115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26055.7115.1
Unique NamemRNA_H-paniculata_contig26055.7115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.480e-28
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1 
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVSTMCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 444
            AW  L+  +DG+TKEARR C  KL  T M+SG+ P DFL  MD  R  LE+M + IPDE YE+++LR L  EY  +R  S + R F L +IR  +  M  D LSR ++   VAGRGVAM A         +++ C  C++ GH   +C
Sbjct:   63 AWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANEC 203
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BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.380e-8
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 1 
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVST---MCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 444
            AW A   ++D  T+EARR CH++L      +G+ P DF       +  L  + + +    Y +I+L  L    E   I     RD N+A +  + +T   +  D  SR  +  +V+GRG AM A+  SD        C  C++ G  +RDC
Sbjct:  115 AWRAQHERFDAQTQEARRACHNELFNLRHLAGNDPIDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRD-NIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSD-------QCHRCKEYGPFQRDC 257
[Close]
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-7
Identity = 42/150 (28.00%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:    1 AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLEEMEQPIPDERYEEIILRVLPAE--YERVRIASCEKRDFNLADIRHIVSTMCTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC 444
            AW AL  ++D  T+EARR CH++L      +G  P DF       +  L+ + + + D  Y +I+L  L     +E +R         ++  ++   +    D  SR  +  +V+GRG AM  +  +D        C  C+  GH +RDC
Sbjct:   95 AWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREMHYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVASDTD-------QCRRCKAYGHFQRDC 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26055.7115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE2.480e-2843.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE2.380e-830.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KC00_9PHAE1.510e-728.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26055contigH-paniculata_contig26055:2840..3283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.6266723-CDS-H-paniculata_contig26055:2839..32831622929777.6266723-CDS-H-paniculata_contig26055:2839..3283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26055 2840..3283 -
1691481006.6121392-CDS-H-paniculata_contig26055:2839..32831691481006.6121392-CDS-H-paniculata_contig26055:2839..3283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26055 2840..3283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26055.7115.1prot_H-paniculata_contig26055.7115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26055 2840..3283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26055.7115.1

>prot_H-paniculata_contig26055.7115.1 ID=prot_H-paniculata_contig26055.7115.1|Name=mRNA_H-paniculata_contig26055.7115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
AWAALQYKYDGNTKEARRECHDKLHTTMMQSGDGPEDFLFVMDGYRDGLE
EMEQPIPDERYEEIILRVLPAEYERVRIASCEKRDFNLADIRHIVSTMCT
DYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCRKRGHLKRDC
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mRNA from alignment at H-paniculata_contig26055:2840..3283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26055.7115.1 ID=mRNA_H-paniculata_contig26055.7115.1|Name=mRNA_H-paniculata_contig26055.7115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig26055:2840..3283- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGGCAGCGCTGCAATACAAGTATGACGGCAACACCAAGGAAGCACG
GAGGGAGTGCCACGACAAGCTCCACACAACAATGATGCAGTCCGGAGATG
GTCCGGAAGATTTCCTCTTCGTCATGGATGGTTATCGCGACGGTTTGGAG
GAAATGGAGCAACCCATACCTGACGAACGCTACGAGGAAATTATTCTCCG
AGTCCTCCCCGCTGAGTACGAAAGGGTTCGTATTGCAAGTTGCGAGAAAC
GTGACTTCAATTTGGCGGACATTCGACACATAGTTAGCACCATGTGCACC
GACTACCTCTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGT
CGCCATGCAGGCAAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAA
CATGCTTCTTTTGCAGGAAGCGAGGCCACCTGAAAAGAGACTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig26055:2840..3283-

>mRNA_H-paniculata_contig26055.7115.1 ID=mRNA_H-paniculata_contig26055.7115.1|Name=mRNA_H-paniculata_contig26055.7115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig26055:2840..3283- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGGCAGCGCTGCAATACAAGTATGACGGCAACACCAAGGAAGCACG
GAGGGAGTGCCACGACAAGCTCCACACAACAATGATGCAGTCCGGAGATG
GTCCGGAAGATTTCCTCTTCGTCATGGATGGTTATCGCGACGGTTTGGAG
GAAATGGAGCAACCCATACCTGACGAACGCTACGAGGAAATTATTCTCCG
AGTCCTCCCCGCTGAGTACGAAAGGGTTCGTATTGCAAGTTGCGAGAAAC
GTGACTTCAATTTGGCGGACATTCGACACATAGTTAGCACCATGTGCACC
GACTACCTCTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGT
CGCCATGCAGGCAAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAA
CATGCTTCTTTTGCAGGAAGCGAGGCCACCTGAAAAGAGACTGCGCGTGG
GCAGCGCTGCAATACAAGTATGACGGCAACACCAAGGAAGCACGGAGGGA
GTGCCACGACAAGCTCCACACAACAATGATGCAGTCCGGAGATGGTCCGG
AAGATTTCCTCTTCGTCATGGATGGTTATCGCGACGGTTTGGAGGAAATG
GAGCAACCCATACCTGACGAACGCTACGAGGAAATTATTCTCCGAGTCCT
CCCCGCTGAGTACGAAAGGGTTCGTATTGCAAGTTGCGAGAAACGTGACT
TCAATTTGGCGGACATTCGACACATAGTTAGCACCATGTGCACCGACTAC
CTCTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCAT
GCAGGCAAGTGGGGGAAGTGATGGCGGCAGAAGGAACCACATAACATGCT
TCTTTTGCAGGAAGCGAGGCCACCTGAAAAGAGACTGC
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