mRNA_H-paniculata_contig2605.7113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2605.7113.1
Unique NamemRNA_H-paniculata_contig2605.7113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2605.7113.1 vs. uniprot
Match: D8LAV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.790e-8
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 2 
Query:  200 AYLAAGVLPFCVLGGDILFLLGQQLRFCSRTR 295
            AYLAAGVLPFCVLGGD+LFLLGQQLRF SR R
Sbjct:  140 AYLAAGVLPFCVLGGDLLFLLGQQLRFHSRVR 171
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BLAST of mRNA_H-paniculata_contig2605.7113.1 vs. uniprot
Match: A0A6H5JSG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.800e-8
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 2 
Query:  200 AYLAAGVLPFCVLGGDILFLLGQQLRFCSRTR 295
            AYLAAGVLPFCVLGGD+LFLLGQQLRF SR R
Sbjct:  141 AYLAAGVLPFCVLGGDLLFLLGQQLRFRSRVR 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2605.7113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAV2_ECTSI2.790e-890.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG8_9PHAE2.800e-890.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2605contigH-paniculata_contig2605:17766..18231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.2473938-UTR-H-paniculata_contig2605:17765..177841622929777.2473938-UTR-H-paniculata_contig2605:17765..17784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2605 17766..17784 +
1691481006.4665034-UTR-H-paniculata_contig2605:17765..177841691481006.4665034-UTR-H-paniculata_contig2605:17765..17784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2605 17766..17784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.2667837-CDS-H-paniculata_contig2605:17784..182311622929777.2667837-CDS-H-paniculata_contig2605:17784..18231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 17785..18231 +
1691481006.4759486-CDS-H-paniculata_contig2605:17784..182311691481006.4759486-CDS-H-paniculata_contig2605:17784..18231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 17785..18231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2605.7113.1prot_H-paniculata_contig2605.7113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2605 17785..18231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2605.7113.1

>prot_H-paniculata_contig2605.7113.1 ID=prot_H-paniculata_contig2605.7113.1|Name=mRNA_H-paniculata_contig2605.7113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MQTCGDAGTLSKALEQPRPSTLISASMTPTTDTRPPMQSPESPTASPSGH
RGRAAGSTDRAYLAAGVLPFCVLGGDILFLLGQQLRFCSRTRSSTSTSCA
SNAGAPGRVRVGNLSHTTGQEGAGGCRGGNVGGGEERQGIGGGGKDDGW
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mRNA from alignment at H-paniculata_contig2605:17766..18231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2605.7113.1 ID=mRNA_H-paniculata_contig2605.7113.1|Name=mRNA_H-paniculata_contig2605.7113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig2605:17766..18231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGGCCGTAGAGAAAGATGCAAACCTGTGGAGATGCAGGAACCTTAT
CAAAGGCGCTCGAGCAGCCACGTCCCAGCACACTGATCTCAGCCAGCATG
ACGCCCACCACAGACACAAGACCGCCGATGCAGTCACCGGAGAGTCCCAC
CGCCTCGCCGAGTGGCCACCGGGGCAGAGCGGCGGGGAGCACCGACCGGG
CTTACCTCGCCGCTGGTGTCTTGCCGTTTTGCGTGCTCGGTGGTGACATT
TTGTTCTTGCTGGGACAGCAGCTTAGGTTTTGCTCACGCACGCGATCCTC
AACCTCGACCTCATGTGCTTCCAATGCTGGGGCGCCGGGCCGTGTAAGGG
TGGGGAATTTATCGCATACCACAGGACAGGAAGGTGCAGGGGGGTGCCGT
GGCGGCAACGTTGGCGGTGGGGAAGAGAGACAGGGGATAGGTGGTGGTGG
TAAAGACGATGGATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2605:17766..18231+

>mRNA_H-paniculata_contig2605.7113.1 ID=mRNA_H-paniculata_contig2605.7113.1|Name=mRNA_H-paniculata_contig2605.7113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig2605:17766..18231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAACCTGTGGAGATGCAGGAACCTTATCAAAGGCGCTCGAGCAGCC
ACGTCCCAGCACACTGATCTCAGCCAGCATGACGCCCACCACAGACACAA
GACCGCCGATGCAGTCACCGGAGAGTCCCACCGCCTCGCCGAGTGGCCAC
CGGGGCAGAGCGGCGGGGAGCACCGACCGGGCTTACCTCGCCGCTGGTGT
CTTGCCGTTTTGCGTGCTCGGTGGTGACATTTTGTTCTTGCTGGGACAGC
AGCTTAGGTTTTGCTCACGCACGCGATCCTCAACCTCGACCTCATGTGCT
TCCAATGCTGGGGCGCCGGGCCGTGTAAGGGTGGGGAATTTATCGCATAC
CACAGGACAGGAAGGTGCAGGGGGGTGCCGTGGCGGCAACGTTGGCGGTG
GGGAAGAGAGACAGGGGATAGGTGGTGGTGGTAAAGACGATGGATGGATG
CAAACCTGTGGAGATGCAGGAACCTTATCAAAGGCGCTCGAGCAGCCACG
TCCCAGCACACTGATCTCAGCCAGCATGACGCCCACCACAGACACAAGAC
CGCCGATGCAGTCACCGGAGAGTCCCACCGCCTCGCCGAGTGGCCACCGG
GGCAGAGCGGCGGGGAGCACCGACCGGGCTTACCTCGCCGCTGGTGTCTT
GCCGTTTTGCGTGCTCGGTGGTGACATTTTGTTCTTGCTGGGACAGCAGC
TTAGGTTTTGCTCACGCACGCGATCCTCAACCTCGACCTCATGTGCTTCC
AATGCTGGGGCGCCGGGCCGTGTAAGGGTGGGGAATTTATCGCATACCAC
AGGACAGGAAGGTGCAGGGGGGTGCCGTGGCGGCAACGTTGGCGGTGGGG
AAGAGAGACAGGGGATAGGTGGTGGTGGTAAAGACGATGGATGG
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