prot_H-paniculata_contig2604.7108.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2604.7108.1
Unique Nameprot_H-paniculata_contig2604.7108.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length131
Homology
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BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: A0A6H5KZ57_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ57_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.730e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:    5 DSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSR 45
            +SP  DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV+R
Sbjct:   24 ESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVAR 64
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BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: D7FMT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.750e-12
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0 
Query:    5 DSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWV 43
            ++P  DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV
Sbjct:   24 EAPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ57_9PHAE2.730e-1273.17RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
D7FMT5_ECTSI6.750e-1271.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 14..50
e-value: 1.6E-5
score: 24.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..57
e-value: 3.8E-7
score: 32.0
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2604contigH-paniculata_contig2604:9909..16853 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2604.7108.1mRNA_H-paniculata_contig2604.7108.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2604 9807..16945 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2604.7108.1 ID=prot_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSRDLLGS
SSACMPCRDVGVDISSKETTLLSSLPAHFLCCDELLQLGVTSAMALRCPL
RFASLATTLVHSSFLCTLSFVSFCSRHNFC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf