mRNA_H-paniculata_contig26037.7107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26037.7107.1
Unique NamemRNA_H-paniculata_contig26037.7107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26037.7107.1 vs. uniprot
Match: A0A6H5J834_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J834_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.040e-13
Identity = 29/43 (67.44%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 PFAQKQLTYDREARELLSPLGVAFPITSSGIPNMVPASARMID 129
            PF++  LTYDREARELLSP+GVAFPIT++G+ +M PASAR+++
Sbjct:   30 PFSKLPLTYDREARELLSPVGVAFPITANGVADMTPASARLVE 72
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BLAST of mRNA_H-paniculata_contig26037.7107.1 vs. uniprot
Match: D8LGQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ7_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.130e-12
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 PFAQKQLTYDREARELLSPLGVAFPITSSGIPNMVPASARMI 126
            PF++  LTYD EARELLSP+GVAFPIT++GI +M PASAR++
Sbjct:    8 PFSKLPLTYDLEARELLSPVGVAFPITANGIADMTPASARLV 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26037.7107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J834_9PHAE3.040e-1367.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGQ7_ECTSI3.130e-1269.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26037contigH-paniculata_contig26037:2177..2332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005400.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.8765397-CDS-H-paniculata_contig26037:2176..23321622929776.8765397-CDS-H-paniculata_contig26037:2176..2332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26037 2177..2332 +
1691481006.3550227-CDS-H-paniculata_contig26037:2176..23321691481006.3550227-CDS-H-paniculata_contig26037:2176..2332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26037 2177..2332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26037.7107.1prot_H-paniculata_contig26037.7107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26037 2177..2332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26037.7107.1

>prot_H-paniculata_contig26037.7107.1 ID=prot_H-paniculata_contig26037.7107.1|Name=mRNA_H-paniculata_contig26037.7107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
PFAQKQLTYDREARELLSPLGVAFPITSSGIPNMVPASARMIDQEFGAPD
A*
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mRNA from alignment at H-paniculata_contig26037:2177..2332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26037.7107.1 ID=mRNA_H-paniculata_contig26037.7107.1|Name=mRNA_H-paniculata_contig26037.7107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig26037:2177..2332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTCGCGCAGAAGCAGCTAACGTACGACCGAGAGGCGCGGGAGCTGCT
GTCGCCGCTCGGAGTAGCATTCCCTATCACTTCCAGTGGTATCCCCAACA
TGGTGCCCGCTTCCGCGAGAATGATCGACCAGGAATTCGGTGCACCAGAT
GCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26037:2177..2332+

>mRNA_H-paniculata_contig26037.7107.1 ID=mRNA_H-paniculata_contig26037.7107.1|Name=mRNA_H-paniculata_contig26037.7107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig26037:2177..2332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTCGCGCAGAAGCAGCTAACGTACGACCGAGAGGCGCGGGAGCTGCT
GTCGCCGCTCGGAGTAGCATTCCCTATCACTTCCAGTGGTATCCCCAACA
TGGTGCCCGCTTCCGCGAGAATGATCGACCAGGAATTCGGTGCACCAGAT
GCATGACCCTTCGCGCAGAAGCAGCTAACGTACGACCGAGAGGCGCGGGA
GCTGCTGTCGCCGCTCGGAGTAGCATTCCCTATCACTTCCAGTGGTATCC
CCAACATGGTGCCCGCTTCCGCGAGAATGATCGACCAGGAATTCGGTGCA
CCAGATGCATGA
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