mRNA_H-paniculata_contig26031.7106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26031.7106.1
Unique NamemRNA_H-paniculata_contig26031.7106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26031.7106.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 3.230e-62
Identity = 110/189 (58.20%), Postives = 138/189 (73.02%), Query Frame = 1 
Query:    1 SDPRLLKMRWTGGLRMISVVIEDARGGQGLPGIGMTEGPAKLVLEALGAKVTIASPPEMDNKDGFAAACS-TPGVNSVRHLREHLLKLSGHLEEHERRGDDGLKWVDNLHEKRLVLRQVGEILNECDWRFSPALGGSWIAVFHHPKVGRNPNVWRTGSATPTIEFRVLMRGARLDKANGVTAVEDAAYA 564
            SDPRL+KMRW GGL M++ VI+DA GG+ +P I +T+ P+ + +EALG KV IA+PPE  N DGF+AAC    GVNS+R LR H+  L GH++EH R GD+GL+WVDNL +KR VLRQVG IL + ++R+ PALGG W+ V H P      +VW TGSATPTIE+RVLMR ARL    G+T  EDA YA
Sbjct: 2814 SDPRLVKMRWDGGLVMVTAVIKDAVGGKAIPHIDLTQSPSGMTIEALGVKVRIAAPPEAKNMDGFSAACGGAVGVNSMRRLRGHVQNLDGHIDEHARGGDEGLRWVDNLKQKRTVLRQVGAILED-EFRYLPALGGLWMRVRHLPSAKTASDVWNTGSATPTIEYRVLMRRARLADEGGLTVEEDAGYA 3001
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BLAST of mRNA_H-paniculata_contig26031.7106.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 8.060e-62
Identity = 107/189 (56.61%), Postives = 138/189 (73.02%), Query Frame = 1 
Query:    1 SDPRLLKMRWTGGLRMISVVIEDARGGQGLPGIGMTEGPAKLVLEALGAKVTIASPPEMDNKDGFAAACS-TPGVNSVRHLREHLLKLSGHLEEHERRGDDGLKWVDNLHEKRLVLRQVGEILNECDWRFSPALGGSWIAVFHHPKVGRNPNVWRTGSATPTIEFRVLMRGARLDKANGVTAVEDAAYA 564
            SDPRL+KM+W GGL M++ V++DA+GG+ +P I +T+ P+ + +EALG K+ IA+PPE  N DGF+AAC    GVNS+R LR  L KL GH++EH R GD+GL+WVDNL++KR VLRQVG IL + ++R+ PALGG W+ V H P       VW TGSATPTIEFRVLMR A L    G+T  ED+ YA
Sbjct: 2088 SDPRLVKMQWDGGLVMVTAVVKDAKGGKAIPDIDLTQSPSGMTMEALGVKIRIAAPPEAKNNDGFSAACGGAVGVNSMRRLRGQLQKLDGHIDEHARGGDEGLRWVDNLNQKRTVLRQVGAILED-EFRYLPALGGLWMRVRHLPSAKSGSGVWNTGSATPTIEFRVLMRRALLADEGGLTVEEDSGYA 2275
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BLAST of mRNA_H-paniculata_contig26031.7106.1 vs. uniprot
Match: D8LBS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.810e-45
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 1 
Query:    1 SDPRLLKMRWTGGLRMISVVIEDARGGQGLPGIGMTEGPAKLVLEALGAKVTIASPPEMDNKDGFAAACSTP-GVNSVRHLREHLLKLSGHLEEHERRGDDGLKWVDNLHEKRLVLRQVGEILNECDWRFSPALGGSWIAVFHHPKVGRNPNVWRTGSATPTIEFRVLMRGARLDKANGVTAVEDAAYA 564
            S+PRL  M W GGL M+S ++EDA G  GLPG+  T    KL +EAL  K+ I +P +  N+ GF A C    GVN ++ L  HL +L+ H++ + R   D L+WVDNL +KR VLRQ   IL E D+ F+PALGG W+   H P        W TG ATP+I+  VLM   RL   +G+   ++  YA
Sbjct:    3 SNPRLANMWWDGGLVMVSAIVEDAAGVTGLPGVTFTHSRWKLTIEALETKIDITAPADAKNQAGFVAGCGGDVGVNRIKRLGHHLQRLNDHIDPNARGSYDSLRWVDNLEQKRTVLRQTDGILGEGDFVFNPALGGIWMRFRHCPSTMNGSGEWNTGFATPSIKLHVLMFRERLANTDGLVVEQNHEYA 191
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BLAST of mRNA_H-paniculata_contig26031.7106.1 vs. uniprot
Match: A0A6H5JFX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.360e-31
Identity = 73/188 (38.83%), Postives = 98/188 (52.13%), Query Frame = 1 
Query:    1 SDPRLLKMRWTGGLRMISVVIEDARGGQGLPGIGMTEGPAKLVLEALGAKVTIASPPEMDNKDGFAAACSTPGVNSVRHLREHLLKLSGHLEEHERRGDDGLKWVDNLHEKRLVLRQVGEILNECDWRFSPALGGSWIAVFHHPKVGRNPNVWRTGSATPTIEFRVLMRGARLDKANGVTAVEDAAYA 564
            SDPRL+KM W G L M++ ++EDA G  GLPG+  T GP KL +EAL  ++T                     +  +R  +  L  ++G +        D L+WVDNL +KR VLRQ+ +IL   D+ F+PALGG W+   H P        W TG ATPTI+  VLM   RL    G+   E+  YA
Sbjct:   14 SDPRLVKMWWDGDLVMVTAIVEDAAGVTGLPGVTFTHGPWKLTIEALKTRLT-------------------SQLQRMRRTKMDLSLVAGGML-------DSLRWVDNLEQKRDVLRQMDDILEGGDFIFNPALGGIWMKFRHCPSTMIGSGEWNTGFATPTIKLHVLMCRERLANTGGLVVQENHEYA 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26031.7106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE3.230e-6258.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI8.060e-6256.61Global transcription factor group n=1 Tax=Ectocarp... [more]
D8LBS6_ECTSI3.810e-4543.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFX2_9PHAE1.360e-3138.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26031contigH-paniculata_contig26031:1344..1988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-26_006510.1
Exons1
Model size645
Cds size624
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.7991972-UTR-H-paniculata_contig26031:1343..13641622929776.7991972-UTR-H-paniculata_contig26031:1343..1364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26031 1344..1364 +
1691481006.3308167-UTR-H-paniculata_contig26031:1343..13641691481006.3308167-UTR-H-paniculata_contig26031:1343..1364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26031 1344..1364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.8117173-CDS-H-paniculata_contig26031:1364..19881622929776.8117173-CDS-H-paniculata_contig26031:1364..1988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26031 1365..1988 +
1691481006.3464277-CDS-H-paniculata_contig26031:1364..19881691481006.3464277-CDS-H-paniculata_contig26031:1364..1988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26031 1365..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26031.7106.1prot_H-paniculata_contig26031.7106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26031 1365..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26031.7106.1

>prot_H-paniculata_contig26031.7106.1 ID=prot_H-paniculata_contig26031.7106.1|Name=mRNA_H-paniculata_contig26031.7106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MRWTGGLRMISVVIEDARGGQGLPGIGMTEGPAKLVLEALGAKVTIASPP
EMDNKDGFAAACSTPGVNSVRHLREHLLKLSGHLEEHERRGDDGLKWVDN
LHEKRLVLRQVGEILNECDWRFSPALGGSWIAVFHHPKVGRNPNVWRTGS
ATPTIEFRVLMRGARLDKANGVTAVEDAAYAARASEARVQAEAEAEATAG
GAEDGEDE
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mRNA from alignment at H-paniculata_contig26031:1344..1988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26031.7106.1 ID=mRNA_H-paniculata_contig26031.7106.1|Name=mRNA_H-paniculata_contig26031.7106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig26031:1344..1988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATCCGCGCCTGCTCAAGATGCGGTGGACGGGTGGGCTAAGAATGAT
CTCGGTGGTGATCGAGGACGCGCGGGGGGGGCAAGGGTTGCCGGGAATCG
GCATGACCGAGGGTCCCGCGAAACTCGTGTTGGAGGCGCTGGGGGCCAAG
GTGACGATCGCCAGTCCACCAGAGATGGACAACAAGGATGGCTTCGCTGC
CGCATGTTCGACCCCCGGCGTGAACTCTGTGAGGCACCTGCGAGAGCACC
TGCTCAAGCTGTCGGGGCATCTGGAAGAGCACGAGCGCCGCGGTGACGAC
GGCCTGAAGTGGGTGGACAATCTCCACGAGAAGCGCCTGGTGCTGCGGCA
AGTAGGAGAGATACTGAACGAGTGCGACTGGCGCTTCTCGCCCGCCCTGG
GTGGGTCCTGGATCGCCGTGTTCCACCACCCGAAGGTAGGCCGCAATCCG
AACGTCTGGCGGACCGGGTCCGCCACACCCACCATCGAGTTCCGAGTGCT
GATGAGGGGCGCGCGGCTTGACAAGGCGAACGGGGTGACCGCGGTTGAGG
ACGCTGCGTACGCTGCTCGCGCCTCGGAAGCGAGGGTTCAGGCGGAAGCG
GAGGCGGAGGCGACAGCGGGTGGAGCGGAGGACGGAGAAGATGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26031:1344..1988+

>mRNA_H-paniculata_contig26031.7106.1 ID=mRNA_H-paniculata_contig26031.7106.1|Name=mRNA_H-paniculata_contig26031.7106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig26031:1344..1988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGGACGGGTGGGCTAAGAATGATCTCGGTGGTGATCGAGGACGC
GCGGGGGGGGCAAGGGTTGCCGGGAATCGGCATGACCGAGGGTCCCGCGA
AACTCGTGTTGGAGGCGCTGGGGGCCAAGGTGACGATCGCCAGTCCACCA
GAGATGGACAACAAGGATGGCTTCGCTGCCGCATGTTCGACCCCCGGCGT
GAACTCTGTGAGGCACCTGCGAGAGCACCTGCTCAAGCTGTCGGGGCATC
TGGAAGAGCACGAGCGCCGCGGTGACGACGGCCTGAAGTGGGTGGACAAT
CTCCACGAGAAGCGCCTGGTGCTGCGGCAAGTAGGAGAGATACTGAACGA
GTGCGACTGGCGCTTCTCGCCCGCCCTGGGTGGGTCCTGGATCGCCGTGT
TCCACCACCCGAAGGTAGGCCGCAATCCGAACGTCTGGCGGACCGGGTCC
GCCACACCCACCATCGAGTTCCGAGTGCTGATGAGGGGCGCGCGGCTTGA
CAAGGCGAACGGGGTGACCGCGGTTGAGGACGCTGCGTACGCTGCTCGCG
CCTCGGAAGCGAGGGTTCAGGCGGAAGCGGAGGCGGAGGCGACAGCGGGT
GGAGCGGAGGACGGAGAAGATGAAATGCGGTGGACGGGTGGGCTAAGAAT
GATCTCGGTGGTGATCGAGGACGCGCGGGGGGGGCAAGGGTTGCCGGGAA
TCGGCATGACCGAGGGTCCCGCGAAACTCGTGTTGGAGGCGCTGGGGGCC
AAGGTGACGATCGCCAGTCCACCAGAGATGGACAACAAGGATGGCTTCGC
TGCCGCATGTTCGACCCCCGGCGTGAACTCTGTGAGGCACCTGCGAGAGC
ACCTGCTCAAGCTGTCGGGGCATCTGGAAGAGCACGAGCGCCGCGGTGAC
GACGGCCTGAAGTGGGTGGACAATCTCCACGAGAAGCGCCTGGTGCTGCG
GCAAGTAGGAGAGATACTGAACGAGTGCGACTGGCGCTTCTCGCCCGCCC
TGGGTGGGTCCTGGATCGCCGTGTTCCACCACCCGAAGGTAGGCCGCAAT
CCGAACGTCTGGCGGACCGGGTCCGCCACACCCACCATCGAGTTCCGAGT
GCTGATGAGGGGCGCGCGGCTTGACAAGGCGAACGGGGTGACCGCGGTTG
AGGACGCTGCGTACGCTGCTCGCGCCTCGGAAGCGAGGGTTCAGGCGGAA
GCGGAGGCGGAGGCGACAGCGGGTGGAGCGGAGGACGGAGAAGATGAA
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