mRNA_H-paniculata_contig26028.7104.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26028.7104.1
Unique NamemRNA_H-paniculata_contig26028.7104.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26028.7104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26028contigH-paniculata_contig26028:2300..2954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.5774243-UTR-H-paniculata_contig26028:2299..24891622929776.5774243-UTR-H-paniculata_contig26028:2299..2489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26028 2300..2489 +
1691481006.270946-UTR-H-paniculata_contig26028:2299..24891691481006.270946-UTR-H-paniculata_contig26028:2299..2489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26028 2300..2489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.589681-CDS-H-paniculata_contig26028:2489..29541622929776.589681-CDS-H-paniculata_contig26028:2489..2954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26028 2490..2954 +
1691481006.2803154-CDS-H-paniculata_contig26028:2489..29541691481006.2803154-CDS-H-paniculata_contig26028:2489..2954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26028 2490..2954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26028.7104.1prot_H-paniculata_contig26028.7104.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26028 2490..2954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26028.7104.1

>prot_H-paniculata_contig26028.7104.1 ID=prot_H-paniculata_contig26028.7104.1|Name=mRNA_H-paniculata_contig26028.7104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MRWRQPFPSTNFCSEAGHATPSMGWLNSNPNDNCCSEAGHATPSIGWLKS
SPNVYCCNEEGHDTPSMRWLKFRPNINCCNEEGHATPSMGWLKLNPNVNC
CSEAGHATPSMGLSKFHPNVYCCNEEGHATPSMDWLKFRPNVNCCNEEGQ
ATPSM
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mRNA from alignment at H-paniculata_contig26028:2300..2954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26028.7104.1 ID=mRNA_H-paniculata_contig26028.7104.1|Name=mRNA_H-paniculata_contig26028.7104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig26028:2300..2954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACAAGTAGTTGGGGACTAAACCAAGGAACCACGCTGTAGGGTTACAG
TCCCTACTCCAAAGCTTCCCCTTATACAGGCCAGCCTCGACCATTTCCTT
TCTTTACCTGAAGTTGCTCTCGACTCACACTCCTAACGAAAGACCACATC
AATGTGACACTGCAACGCGTCACTCCACCTTCCACCGCCAATGCGCTGGC
GACAACCATTCCCGAGCACCAATTTTTGCAGCGAAGCAGGCCATGCTACC
CCCTCAATGGGCTGGTTGAATTCAAACCCGAACGACAACTGCTGCAGTGA
GGCAGGCCATGCTACCCCCTCAATAGGCTGGTTGAAATCCTCCCCGAACG
TCTACTGCTGCAACGAAGAAGGCCATGATACCCCCTCGATGCGCTGGTTG
AAATTCCGCCCGAACATCAACTGCTGCAACGAAGAAGGCCATGCTACCCC
CTCAATGGGCTGGTTGAAATTAAACCCGAACGTCAACTGCTGCAGTGAGG
CAGGCCATGCTACTCCCTCGATGGGCTTGTCGAAGTTCCACCCGAACGTC
TACTGCTGCAACGAAGAAGGCCATGCTACCCCCTCAATGGACTGGTTGAA
ATTCCGCCCGAACGTCAACTGCTGCAACGAAGAAGGCCAAGCTACCCCCT
CAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig26028:2300..2954+

>mRNA_H-paniculata_contig26028.7104.1 ID=mRNA_H-paniculata_contig26028.7104.1|Name=mRNA_H-paniculata_contig26028.7104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig26028:2300..2954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTGGCGACAACCATTCCCGAGCACCAATTTTTGCAGCGAAGCAGG
CCATGCTACCCCCTCAATGGGCTGGTTGAATTCAAACCCGAACGACAACT
GCTGCAGTGAGGCAGGCCATGCTACCCCCTCAATAGGCTGGTTGAAATCC
TCCCCGAACGTCTACTGCTGCAACGAAGAAGGCCATGATACCCCCTCGAT
GCGCTGGTTGAAATTCCGCCCGAACATCAACTGCTGCAACGAAGAAGGCC
ATGCTACCCCCTCAATGGGCTGGTTGAAATTAAACCCGAACGTCAACTGC
TGCAGTGAGGCAGGCCATGCTACTCCCTCGATGGGCTTGTCGAAGTTCCA
CCCGAACGTCTACTGCTGCAACGAAGAAGGCCATGCTACCCCCTCAATGG
ACTGGTTGAAATTCCGCCCGAACGTCAACTGCTGCAACGAAGAAGGCCAA
GCTACCCCCTCAATGATGCGCTGGCGACAACCATTCCCGAGCACCAATTT
TTGCAGCGAAGCAGGCCATGCTACCCCCTCAATGGGCTGGTTGAATTCAA
ACCCGAACGACAACTGCTGCAGTGAGGCAGGCCATGCTACCCCCTCAATA
GGCTGGTTGAAATCCTCCCCGAACGTCTACTGCTGCAACGAAGAAGGCCA
TGATACCCCCTCGATGCGCTGGTTGAAATTCCGCCCGAACATCAACTGCT
GCAACGAAGAAGGCCATGCTACCCCCTCAATGGGCTGGTTGAAATTAAAC
CCGAACGTCAACTGCTGCAGTGAGGCAGGCCATGCTACTCCCTCGATGGG
CTTGTCGAAGTTCCACCCGAACGTCTACTGCTGCAACGAAGAAGGCCATG
CTACCCCCTCAATGGACTGGTTGAAATTCCGCCCGAACGTCAACTGCTGC
AACGAAGAAGGCCAAGCTACCCCCTCAATG
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