mRNA_H-paniculata_contig26008.7100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26008.7100.1
Unique NamemRNA_H-paniculata_contig26008.7100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26008.7100.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.680e-22
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    4 FTFGSSKPLSRFVCRVDRGQWRECDERSELPLTDGVHDLSVLAVDPSGRVGSSAVHYGWEVSV 192
            FTFGSSKPLSRF+C+VD G WR+CDE S+ PL+DG+H + V+AVDP+GR   + + Y WEVS+
Sbjct:  266 FTFGSSKPLSRFMCKVDSGMWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVSM 328
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BLAST of mRNA_H-paniculata_contig26008.7100.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-21
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    4 FTFGSSKPLSRFVCRVDRGQWRECDERSELPLTDGVHDLSVLAVDPSGRVGSSAVHYGWEVSV 192
            FTFGSSKPLSRF+C+VD G WR+CDE S+ PL+DG+H + V+AVDP+GR   + + Y WEVS+
Sbjct:  602 FTFGSSKPLSRFMCKVDSGLWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVSM 664
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26008.7100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K857_9PHAE5.680e-2261.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK9_ECTSI1.060e-2161.90OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26008contigH-paniculata_contig26008:1872..2066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.7e-18
Seed eggNOG ortholog2880.D8LBK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.018275-CDS-H-paniculata_contig26008:1871..20661622929776.018275-CDS-H-paniculata_contig26008:1871..2066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26008 1872..2066 -
1691481006.0609524-CDS-H-paniculata_contig26008:1871..20661691481006.0609524-CDS-H-paniculata_contig26008:1871..2066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26008 1872..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26008.7100.1prot_H-paniculata_contig26008.7100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26008 1872..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26008.7100.1

>prot_H-paniculata_contig26008.7100.1 ID=prot_H-paniculata_contig26008.7100.1|Name=mRNA_H-paniculata_contig26008.7100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
QFTFGSSKPLSRFVCRVDRGQWRECDERSELPLTDGVHDLSVLAVDPSGR
VGSSAVHYGWEVSVQ
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mRNA from alignment at H-paniculata_contig26008:1872..2066-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26008.7100.1 ID=mRNA_H-paniculata_contig26008.7100.1|Name=mRNA_H-paniculata_contig26008.7100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig26008:1872..2066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCACGTTTGGCTCGAGCAAGCCCCTGTCTCGCTTCGTGTGCAGAGT
GGACAGAGGTCAGTGGCGGGAGTGCGACGAAAGGTCGGAGCTTCCACTGA
CCGACGGAGTACATGACCTGTCAGTCTTGGCCGTTGACCCCTCGGGTAGG
GTGGGATCGAGTGCGGTGCACTACGGCTGGGAGGTCAGTGTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26008:1872..2066-

>mRNA_H-paniculata_contig26008.7100.1 ID=mRNA_H-paniculata_contig26008.7100.1|Name=mRNA_H-paniculata_contig26008.7100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig26008:1872..2066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCACGTTTGGCTCGAGCAAGCCCCTGTCTCGCTTCGTGTGCAGAGT
GGACAGAGGTCAGTGGCGGGAGTGCGACGAAAGGTCGGAGCTTCCACTGA
CCGACGGAGTACATGACCTGTCAGTCTTGGCCGTTGACCCCTCGGGTAGG
GTGGGATCGAGTGCGGTGCACTACGGCTGGGAGGTCAGTGTGCAGCAGTT
CACGTTTGGCTCGAGCAAGCCCCTGTCTCGCTTCGTGTGCAGAGTGGACA
GAGGTCAGTGGCGGGAGTGCGACGAAAGGTCGGAGCTTCCACTGACCGAC
GGAGTACATGACCTGTCAGTCTTGGCCGTTGACCCCTCGGGTAGGGTGGG
ATCGAGTGCGGTGCACTACGGCTGGGAGGTCAGTGTGCAG
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