prot_H-paniculata_contig25993.7094.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25993.7094.1
Unique Nameprot_H-paniculata_contig25993.7094.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length295
Homology
BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.150e-33
Identity = 87/254 (34.25%), Postives = 132/254 (51.97%), Query Frame = 0
Query:   41 RGIARELAGLTVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTWYGEGKKAGKGMATKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVNIALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQRLDEASATEENLEQSTLADGSQGVGNLNVSRLPTPREAM--KTLEQFIRQLTLEGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAF 292
            R + +++A L   IP    +LP  +  ++ L E +R    W   L+ W  +GK+ GKG AT++ R+FFLC +D SLAECG  G+GY +     W  K +PFA+    + +IAL+   GL+IP        G     ALS   E++  +  ++  S   +RLD   A  E L Q   A G+Q          P+P +    +TL++ I+   ++G++  S   PF  FD  M LVD+  +GE W+WVR KN+  F
Sbjct: 1005 RSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLDGGRA--EGLPQGAGAHGAQ-------QGWPSPVQGFTYETLKEVIKSFEVDGMRGRS---PFPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246          
BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.050e-28
Identity = 93/283 (32.86%), Postives = 130/283 (45.94%), Query Frame = 0
Query:   32 LEPHRSSHLRGIARELAGLTVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTW-------------------YGEGKKAGKGMATKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVNIALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQRLD--EASATEENLEQSTL-ADGSQGVGNLNVSRLPTPREAMKTLEQFIRQLTLEGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAF 292
            L P     L G+ARE+A L   IP    +LP R      L+E +R    W   LK W                    G  K   +G+ T+E RLFFLCG D SLAECG DG+GY ++    WV K  P AK  L + +IALK   GL++  +      G S D  +S+ VED   A  +   S    RLD  + S   E L  + +  DG Q +       +P        L++ I+   ++  ++    +P   FDTTM +VD+   G  W+WVR +N+  F
Sbjct:  868 LRPTERDILVGVAREVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSED--MSAFVEDALSAGIEGTTSKAGNRLDRLQNSGPSERLPHAGVRGDGMQTL-------IPLEGFDYDKLKEVIKSFEVDRTQRDGSRYP--SFDTTMNIVDRRGHGVEWAWVRNRNIDQF 1136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU35_ECTSI1.150e-3334.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI3.050e-2832.86LRR-GTPase of the ROCO family, incomplete sequence... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25993contigH-paniculata_contig25993:1503..2600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25993.7094.1mRNA_H-paniculata_contig25993.7094.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25993 1493..3223 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25993.7094.1 ID=prot_H-paniculata_contig25993.7094.1|Name=mRNA_H-paniculata_contig25993.7094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
MAKDVKDVVESQKTMLETVASIEDQVKEMRRLEPHRSSHLRGIARELAGL
TVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTWYGEGKKAGKGMA
TKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVN
IALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQR
LDEASATEENLEQSTLADGSQGVGNLNVSRLPTPREAMKTLEQFIRQLTL
EGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAFTS*
back to top