mRNA_H-paniculata_contig11097.709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11097.709.1
Unique NamemRNA_H-paniculata_contig11097.709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11097.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11097contigH-paniculata_contig11097:239..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size578
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.8076026-CDS-H-paniculata_contig11097:238..2961622928815.8076026-CDS-H-paniculata_contig11097:238..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11097 239..296 +
1691480631.0553138-CDS-H-paniculata_contig11097:238..2961691480631.0553138-CDS-H-paniculata_contig11097:238..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11097 239..296 +
1622928815.824716-CDS-H-paniculata_contig11097:499..10171622928815.824716-CDS-H-paniculata_contig11097:499..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11097 500..1017 +
1691480631.0645685-CDS-H-paniculata_contig11097:499..10171691480631.0645685-CDS-H-paniculata_contig11097:499..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11097 500..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11097.709.1prot_H-paniculata_contig11097.709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11097 239..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11097.709.1

>prot_H-paniculata_contig11097.709.1 ID=prot_H-paniculata_contig11097.709.1|Name=mRNA_H-paniculata_contig11097.709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
VDCPAIALYGPMVLRAIVGALDEVVLTCLKNAGHTGTAALCRLGSFKAKA
VKLLTQRALQQEGITAGGAASSICFYSTEATPELLAELLSLKLDLAVIAL
PDKINIASPDDCESHRTIAYPSFSKQASPRNIGDGGRRPRLGDRSSESDG
IRFPAGNMTEGASSKMTTVVDNFGAKVACFERAVGMAGLLAS
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mRNA from alignment at H-paniculata_contig11097:239..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11097.709.1 ID=mRNA_H-paniculata_contig11097.709.1|Name=mRNA_H-paniculata_contig11097.709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=781bp|location=Sequence derived from alignment at H-paniculata_contig11097:239..1019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGACTGCCCTGCCATTGCTCTCTACGGGCCGATGGTACTGCGGGCGAT
AGTGGGGGGTGAGTTCAGCGTAGGTTATCCAATCTGATGCCTTGCACGAT
TTAGGGGTATAACTTAACGTCACCCATTAACGGTTCGCGTACTGCATACA
AGATACTTTCGATGAATCAATACACCTTTAATTGTTAGCGAAGGTAGAGT
GCACTACACGATTGGATCGGTCAACCCACAACGGCTCCCTGCTCTATTTT
GCGACCCGCAGCACTGGATGAAGTGGTGTTGACATGTCTCAAGAATGCCG
GCCACACTGGGACTGCCGCCCTCTGTCGACTGGGCTCCTTCAAAGCGAAG
GCCGTAAAACTTCTCACACAGCGGGCATTACAGCAGGAAGGTATTACGGC
TGGTGGAGCAGCCTCCTCGATCTGTTTCTATTCCACTGAAGCCACCCCAG
AACTCCTGGCAGAGCTATTGTCATTGAAGCTAGACCTGGCGGTGATCGCA
TTACCTGATAAAATTAATATTGCTAGCCCTGACGATTGCGAGTCGCACAG
AACGATAGCTTATCCATCCTTTTCAAAGCAAGCTAGTCCCAGGAATATCG
GTGATGGTGGGAGAAGACCAAGGTTAGGCGATAGATCATCGGAGAGCGAT
GGAATCAGATTTCCGGCAGGAAATATGACTGAGGGAGCTTCGAGCAAGAT
GACTACAGTTGTAGACAATTTTGGCGCCAAAGTAGCATGTTTTGAGAGGG
CGGTAGGAATGGCGGGCCTTCTGGCATCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11097:239..1019+

>mRNA_H-paniculata_contig11097.709.1 ID=mRNA_H-paniculata_contig11097.709.1|Name=mRNA_H-paniculata_contig11097.709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig11097:239..1019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGACTGCCCTGCCATTGCTCTCTACGGGCCGATGGTACTGCGGGCGAT
AGTGGGGGGTTGACTGCCCTGCCATTGCTCTCTACGGGCCGATGGTACTG
CGGGCGATAGTGGGGGCACTGGATGAAGTGGTGTTGACATGTCTCAAGAA
TGCCGGCCACACTGGGACTGCCGCCCTCTGTCGACTGGGCTCCTTCAAAG
CGAAGGCCGTAAAACTTCTCACACAGCGGGCATTACAGCAGGAAGGTATT
ACGGCTGGTGGAGCAGCCTCCTCGATCTGTTTCTATTCCACTGAAGCCAC
CCCAGAACTCCTGGCAGAGCTATTGTCATTGAAGCTAGACCTGGCGGTGA
TCGCATTACCTGATAAAATTAATATTGCTAGCCCTGACGATTGCGAGTCG
CACAGAACGATAGCTTATCCATCCTTTTCAAAGCAAGCTAGTCCCAGGAA
TATCGGTGATGGTGGGAGAAGACCAAGGTTAGGCGATAGATCATCGGAGA
GCGATGGAATCAGATTTCCGGCAGGAAATATGACTGAGGGAGCTTCGAGC
AAGATGACTACAGTTGTAGACAATTTTGGCGCCAAAGTAGCATGTTTTGA
GAGGGCGGTAGGAATGGCGGGCCTTCTGGCATCCCACTGGATGAAGTGGT
GTTGACATGTCTCAAGAATGCCGGCCACACTGGGACTGCCGCCCTCTGTC
GACTGGGCTCCTTCAAAGCGAAGGCCGTAAAACTTCTCACACAGCGGGCA
TTACAGCAGGAAGGTATTACGGCTGGTGGAGCAGCCTCCTCGATCTGTTT
CTATTCCACTGAAGCCACCCCAGAACTCCTGGCAGAGCTATTGTCATTGA
AGCTAGACCTGGCGGTGATCGCATTACCTGATAAAATTAATATTGCTAGC
CCTGACGATTGCGAGTCGCACAGAACGATAGCTTATCCATCCTTTTCAAA
GCAAGCTAGTCCCAGGAATATCGGTGATGGTGGGAGAAGACCAAGGTTAG
GCGATAGATCATCGGAGAGCGATGGAATCAGATTTCCGGCAGGAAATATG
ACTGAGGGAGCTTCGAGCAAGATGACTACAGTTGTAGACAATTTTGGCGC
CAAAGTAGCATGTTTTGAGAGGGCGGTAGGAATGGCGGGCCTTCTGGCAT
CC
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