mRNA_H-paniculata_contig25986.7090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25986.7090.1
Unique NamemRNA_H-paniculata_contig25986.7090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 6.740e-70
Identity = 136/281 (48.40%), Postives = 180/281 (64.06%), Query Frame = 3
Query:  777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            M + + R+  T+  + E      LER+ M+   PT TPG G E+S  QP++ LL++++ +++Q I GS+MY+ QV R DI+YA   L R M+KPSK  M   KH LRYL GT+DF ITYK+G FKL  FSD+N  N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V        +        +PVY DNT  LH  GNR++SS  +HIALR+FFIR      + S      ++ L D+GTKH  K R+ +L+ LIN F V
Sbjct:  157 MEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDV 437          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 6.390e-68
Identity = 138/285 (48.42%), Postives = 185/285 (64.91%), Query Frame = 3
Query:  777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            M + + R+  T+  + E      LER+ M+   PT TPG G E+S  QP++ LL++++ +++Q I GS+MY+ QV R DI+YA   L R+M+KPSK  M   KH LRYL GT+DF ITYK+G FKL  FSD+N  N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V    ++ E G G         +PVY DNT  LH  GNR++SS  +HIALR+FFIR      + S      ++ L D+GTKH  K R+++L+ LIN   V
Sbjct:  378 MKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQ----LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLDV 658          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 2.590e-65
Identity = 135/281 (48.04%), Postives = 180/281 (64.06%), Query Frame = 3
Query:  777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            M + + R+  T+  + E      LER+ M+   PT TPG G E+S  QP++ LL++++ +++Q I GS+MY+ QV R DI+YA   L R M+KPSK  M   KH LRYL GT+DF ITYK+G FKL  FSD+N  N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V        +        +PVY DNT  LH  GNR++SS  +HIALR+FFIR      + S      ++ L D+GTKH    R+++L+ LIN F V
Sbjct:  717 MEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFDV 997          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.970e-63
Identity = 133/281 (47.33%), Postives = 180/281 (64.06%), Query Frame = 3
Query:  777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            M + + R+  T+  + E      LER+ ++   PT TPG G E+S  QP++ LL++++ +++Q I GS+MY+ QV R DI+YA   L R M+KPSK  M   KH LRYL GT+DF ITYK+G FKL  FSD+N  N PDNG S SS++ +L+NAP+SF+ GLQGLTA STME ELVA+AL M E+V        +        +PVY DNT  LH  GNR++SS  +HIALR+FFIR      + S      ++ L D+GTKH  K R+++L+ LIN F V
Sbjct: 1386 MEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFDV 1666          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 3.490e-63
Identity = 132/259 (50.97%), Postives = 169/259 (65.25%), Query Frame = 3
Query:  819 TGELERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEF 1592
            T  L+R+ M S  P  T G G ELS+ QP+E LLN E KQR+QAI GSVMYL QVTR DI+Y  +   R MS PSK  M   KHLLRYL G+ DF ITYK+G F LTA S+AN G+  DNG SMSS+I M+S AP S K GLQ LTA ST+E ELVA+AL MKE +      + +       S P++ID+T  L+V GN+T+S H +H+ALR+F+IR   +    S      ++ L D+GT++L K+R++YLI  I  F
Sbjct:  518 TSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 3.190e-62
Identity = 138/285 (48.42%), Postives = 179/285 (62.81%), Query Frame = 3
Query:  777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAESA-STT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            M + + R+ GT+  + E      L+R+ M++  PT TPG+G   S  QP+E LLN+E+ +R+Q I G ++YL Q+ R DI+YA + L R M+KPSK  M   K   RYL GT  F I YK+G FKLTAF+D+N GN PDNG S SS + ML +AP++FK GLQ LT QSTMEVELVAAAL +KE+V    +L E G G      L  VP+Y DNT  LH  GNR+YSS  +HIALR+FFIR        A       +   D+GTKHL K R++ L+ +I  F V
Sbjct:  440 MEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFG----KELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 4.550e-56
Identity = 109/212 (51.42%), Postives = 136/212 (64.15%), Query Frame = 3
Query:  966 MYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
            MY+ QV R DI+YA  HL R M+KPSK      K  LRYL GT+DF ITYK+G FKL  FSD+N  N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V        +        +PVY DNT  LH  GNR++SS  +HIALR+FFIR      + S      ++ L  +GTKH  K R+++L+  IN F V
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFDV 212          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 5.930e-54
Identity = 129/259 (49.81%), Postives = 160/259 (61.78%), Query Frame = 3
Query:  828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINE 1589
            L+R+ M S+ P  T G G ELS                  AI GSV+YL Q+TR DI+Y  + L R MS PSK  M   KHLLRYL G+ DF ITYK+G F LTA SDAN GN PDN  SMSS+I M+S APVSFK GLQ LTA ST+E ELVAAAL MKE++    ++ E G G   R    S P+YI NT  LHV GN+T+S   +H+ALR+F+IR   +    S      ++ L D+GTKHL K+R++ LI  I +
Sbjct:  452 LDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFR----SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 6.220e-53
Identity = 110/261 (42.15%), Postives = 159/261 (60.92%), Query Frame = 3
Query:  828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-----SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFR 1595
            L+RY M   NP  TPG G ELS +QP+++LL  E+KQRFQ ITGS++YL Q TR D+ YA++ LTR  + P++  MA  KHLLRYL GT D  I YK+G F+L+ F+D++ G  PDNG S + ++  L    +S+    Q L AQ+T+E EL A +   +E+V +      +  +    SVP+  D+T AL VA N  +SS  +HIALR+FF+R   +          S T     L D+ TKHL K+R+  +++LI +++
Sbjct:   41 LQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK-TFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSAT----MLADIATKHLPKQRFATIMQLIKDYK 296          
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 7.060e-50
Identity = 112/261 (42.91%), Postives = 160/261 (61.30%), Query Frame = 3
Query:  828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-----SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFR 1595
            L+RY M   NP  TPG G ELS +QP+++LL  EDKQRFQAITGS++YL Q TR D+ YA++ LTR  + P++  MA  KHLLRYL GT D  I YK+G F+L+ F+D++ G  PDNG S + ++  L    +S+    Q L AQ+T+E EL A +   +E+V +      +  +    SVP+  D+T AL VA N  +SS  +HIALR+FF+R   +          S T     L D+ TKHL K+R+  +++LI +++
Sbjct:  478 LQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK-TFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSAT----MLADIATKHLPKQRFATIMQLIKDYK 733          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE6.740e-7048.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE6.390e-6848.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.590e-6548.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.970e-6347.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE3.490e-6350.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE3.190e-6248.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE4.550e-5651.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE5.930e-5449.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC04_9PHAE6.220e-5342.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE7.060e-5042.91Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25986contigH-paniculata_contig25986:68..3537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.6
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog37727.XP_002147152.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Exons1
Model size3470
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25986.7090.1prot_H-paniculata_contig25986.7090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25986 1096..1575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.4638472-UTR-H-paniculata_contig25986:67..10951622929774.4638472-UTR-H-paniculata_contig25986:67..1095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25986 68..1095 +
1691481005.3380225-UTR-H-paniculata_contig25986:67..10951691481005.3380225-UTR-H-paniculata_contig25986:67..1095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25986 68..1095 +
1622929774.4866865-UTR-H-paniculata_contig25986:1575..35371622929774.4866865-UTR-H-paniculata_contig25986:1575..3537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25986 1576..3537 +
1691481005.3679094-UTR-H-paniculata_contig25986:1575..35371691481005.3679094-UTR-H-paniculata_contig25986:1575..3537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25986 1576..3537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.4755049-CDS-H-paniculata_contig25986:1095..15751622929774.4755049-CDS-H-paniculata_contig25986:1095..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25986 1096..1575 +
1691481005.3555043-CDS-H-paniculata_contig25986:1095..15751691481005.3555043-CDS-H-paniculata_contig25986:1095..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25986 1096..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25986.7090.1

>prot_H-paniculata_contig25986.7090.1 ID=prot_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDN
GNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLE
HGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWP
RRAESASTT*
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mRNA from alignment at H-paniculata_contig25986:68..3537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25986.7090.1 ID=mRNA_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3470bp|location=Sequence derived from alignment at H-paniculata_contig25986:68..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTAGTTGCTGCTGAAACATTGCCAGGAAGGGTGTTCGTTACAGCTAG TGTCATCGAGAAGTATGGCAACGGCAGGCTCACGTATTTGGAGCTACAGG TGATACAACCTGCGTACGTGGTACAATATGTACCGATACGACGGAAAAGC TAGTACTGTCGGTTTCAGTAAGTAATGTTTCGACTGCAGGAGTTAGGTAG CACGCGTCATGTACCGTAGCAAATAATGTGTAAATTCTGCCTGTAATGTA GGAGTACAACGGCTTGTCGGACTAACCGACAACACAGCAATGATCCGGGT GTGTGCATCTTTCTAAGGGAGCAAACGTGGTTGCCCACCACGTGGATCAT TCCTCCTCAACGTCCCCGCTCAAAGTCCTCTTTTCCAGCTGAAGCTTGCT GGATATTTAGTTAAGAAAGTCCACAAATATCTGGTTTATTCAATATTAGC AACGTCGCTTGCGGATGTCCTCCTTGGACCTCCACGACCCACCGCAGCCC GCGGCTATAGTTTGGACTTCTCTCTTTTCCCTCGCCATGTAGCAGCGGTG CCTATTCCGCCGCCTCGAACAGCAAGTTTCTGGTTGCTGATGTTGGGTCC CCAAACTGTGCCGGCAGAGTGTCCTGTACCATCACCGGCATTAATCTCTG AAGAACAAACCAATCAAGTAGACGGCTAAGCTTCAAGCATATCCGCTAGC GTGTTGAGTTGCCGCGATTCTCTCATAATCAGGAAAGACTAATGTCGATT CCACATGCCCACAGCTCCGAGACCACATGGGCGTGACCCAAGGAAGAAAG AATGGCACGGTTAAATACACTGGAGAATTGGAGCGGTATCGTATGGCAAG CTATAATCCTACGTACACGCCTGGTATGGGAAAAGAGCTTTCGCTTGACC AACCGAAGGAGAAGCTGCTGAACAAAGAGGATAAGCAGCGATTTCAGGCC ATCACAGGCTCCGTAATGTACCTCGGGCAGGTGACCCGCTAGGACATCCT GTACGCCATCAACCACCTGACGAGGACGATGTCCAAACCGTCCAAGGCGC GTATGGCAGTAACCAAGCACCTACTTCGCTATCTGATCGGGACGATGGAC TTCGTCATTACCTACAAGCAAGGGAGTTTCAAGCTCACGGCGTTTTCGGA TGCAAACTGTGGTAACAAACCGGATAACGGCAACTCGATGTCGTCATTCA TCGCCATGCTTTCGAACGCTCCGGTAAGCTTCAAGGTGGGACTGCAAGGG CTGACAGCGCAGTCCACGATGGAGGTAGAACTTGTGGCCGCAGCGCTAAT GATGAAGGAGTCAGTTGTTTTGCTCGAACATGGTGAAGGAGTTAGAATTC GGCACGCGCTCGACAGCGTACCAGTGTACATTGATAACACCTTGGCACTG CACGTCGCAGGCAACCGGACCTACAGCTCGCATGTGAGACACATAGCACT ACGGTACTTCTTCATCAGGAGCTGGCCAAGAAGGGCAGAATCAGCATCCA CTACGTGAAGACAGAATCAACTCGGTGATGTTGGCACCAAGCATCTTGGC AAGCGCAGGTACCGTTACCTCATCAAGTTGATCAACGAGTTTCGGGTTTG GGTGGCAACGCTCTATACCATCAACAAGGTCGTCGCGACAAGGAATGGAT ACTGAGCTGCTTTGCTTTCTCGTTCGATTGTCTCTGGTTTTATTAAGAAC GGGGGGACCTCTTACTGGTGATGTTGTCTTTCTTTGTATTTTGTTTTGTT TTGTTTCGTTTCCTTTTCTTCGTTAGTATTACTATTATTTGTTTTTAAGT TTCTGTTGCATTGTAGCATTAAGGTAATCGTAGTCATATGCTTAAGAGCG TTTGGGGTATTGTGTCTAGGCGTGAGGCACAGCCACTCCGGGGCAGGGAG AGGAAAGTGTAGAAAGACGTAGAAATGCGTAGAGATATGTAGTATACAAA AGACAGTATACAACGGAATAGTTAGGTAGGAAAGGAAAAGTGGTAGTACA ATAAACAGCATATTGGTGAAATGGGGACCCAAGTTTGAGATGAAGACCCT GGGTTATATTGGAAATAGACTGTATCCTGAAGATCCGAAATTGAATTTCA GGAAAAGGCCTATTTCCAATAGAACCCAGGGCTCCCATCTCAAACTTGGG TCCCCATTTCACCAATATGCTGTTAATAATAGTTAGTGATTAAAGGAGGG GTGGCACGTATGCATAACCACCTCAGTCTTACATATGATGTATTGCAACT AAACATGCCGGCCATATATAAACTCCATGTAACCGAATAGTCACGTAACC GTCGCTTTATCGATCATACCCAACATAAGGGTAACATGCAATCGCATTGA GGGGGAGTGTTAAGAAATAGACAACTATGCCTATGTAGTCAATATTTCGT AGCATGGAGTGTGCTGAGCTTTACTCAGCAGTACTATAACAGTGTGTTTG AAACAGAGTCTTAGGATGATCTGTCTGTCGATGATCACTAGTGTGGCACT GTATACATGATTGCCTAGCAATGAAAGTGAGTGTTGCTGCGACTTAGTAC ACGAGGATGGATAGGAACGACATACCCTAAGGAGTAATGACAAAATAGCG GCGAAATTCGTCACGTTTCGTAGTTAGTTGTTTCTTTCCACGAATTGGGT GATCTTCTAGTAGAAGAGATTGATTCGACAGTTCTTTGAGAAGTTCCCGT AACTCGCGGAAGGGTAGGAACGATGCGCTTGTACGTGGTGGATGCGTGTA CGTAGCTTAGGAGGGAGCGAACACACGATGGGGTGCGCCCCACCATCTCC CACTCCTTGTAAGATTCCTTTTGATCTCCCCTTTGTTTTCTTCTCTAGCC CACAAGCGGCACTTTTCAACCATCATCAACTGTTTGTATCCTCGGCACAG CATGCCTGCTCGGTCAGCTTAACAGCTACCAGCACCAGCCTTTGCAGCTA CCTTCTGTTGTATCATCAGATATTCTCAATATTTGGCAGTAGTGGGTTTC GGAAGTAACTATGGTATGTATACGTTTGAATTTCGTTGTGGTACGTATGG TGTGAGAGCAGTTCAAGCCTTGGAGGATGTATACAAAATGTTTTACCAAG CGATTAACTGGTGTGGTCCGGTGTGTGAGTGGGATGGGTTGTGTATGCGT GGCTTTGATAGACTGGTCTGTGGTGACTGCGTTATAGCCACTCGTTCATT CTCTCTCTCTACACCAATGTTTTGGAACTTATCCCAAAATTCTCCAACTT GGGGAATTACTTGATGAGTATATCAGAAAGAAAAATCAATATGTTTTCTA TGCCTGCAAAGGTTACACATGATAGGTTTACTCGTACATGTACTGAGCGT TGTAACTGCCAACGACCGTACGGATATTTCATGTGTATTATTCTGATGAT ATAAGATGGATGATTCGGGGTACAGAGGGGGATACGACAGGTATTCGGGA TTGTCCAGGACCGGGGTTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig25986:68..3537+

>mRNA_H-paniculata_contig25986.7090.1 ID=mRNA_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig25986:68..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAACCGTCCAAGGCGCGTATGGCAGTAACCAAGCACCTACTTCG
CTATCTGATCGGGACGATGGACTTCGTCATTACCTACAAGCAAGGGAGTT
TCAAGCTCACGGCGTTTTCGGATGCAAACTGTGGTAACAAACCGGATAAC
GGCAACTCGATGTCGTCATTCATCGCCATGCTTTCGAACGCTCCGGTAAG
CTTCAAGGTGGGACTGCAAGGGCTGACAGCGCAGTCCACGATGGAGGTAG
AACTTGTGGCCGCAGCGCTAATGATGAAGGAGTCAGTTGTTTTGCTCGAA
CATGGTGAAGGAGTTAGAATTCGGCACGCGCTCGACAGCGTACCAGTGTA
CATTGATAACACCTTGGCACTGCACGTCGCAGGCAACCGGACCTACAGCT
CGCATGTGAGACACATAGCACTACGGTACTTCTTCATCAGGAGCTGGCCA
AGAAGGGCAGAATCAGCATCCACTACGTGAATGTCCAAACCGTCCAAGGC
GCGTATGGCAGTAACCAAGCACCTACTTCGCTATCTGATCGGGACGATGG
ACTTCGTCATTACCTACAAGCAAGGGAGTTTCAAGCTCACGGCGTTTTCG
GATGCAAACTGTGGTAACAAACCGGATAACGGCAACTCGATGTCGTCATT
CATCGCCATGCTTTCGAACGCTCCGGTAAGCTTCAAGGTGGGACTGCAAG
GGCTGACAGCGCAGTCCACGATGGAGGTAGAACTTGTGGCCGCAGCGCTA
ATGATGAAGGAGTCAGTTGTTTTGCTCGAACATGGTGAAGGAGTTAGAAT
TCGGCACGCGCTCGACAGCGTACCAGTGTACATTGATAACACCTTGGCAC
TGCACGTCGCAGGCAACCGGACCTACAGCTCGCATGTGAGACACATAGCA
CTACGGTACTTCTTCATCAGGAGCTGGCCAAGAAGGGCAGAATCAGCATC
CACTACGTGA
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