mRNA_H-paniculata_contig25986.7090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 251 bits (641), Expect = 6.740e-70 Identity = 136/281 (48.40%), Postives = 180/281 (64.06%), Query Frame = 3
Query: 777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
M + + R+ T+ + E LER+ M+ PT TPG G E+S QP++ LL++++ +++Q I GS+MY+ QV R DI+YA L R M+KPSK M KH LRYL GT+DF ITYK+G FKL FSD+N N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V + +PVY DNT LH GNR++SS +HIALR+FFIR + S ++ L D+GTKH K R+ +L+ LIN F V
Sbjct: 157 MEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDV 437
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 252 bits (643), Expect = 6.390e-68 Identity = 138/285 (48.42%), Postives = 185/285 (64.91%), Query Frame = 3
Query: 777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
M + + R+ T+ + E LER+ M+ PT TPG G E+S QP++ LL++++ +++Q I GS+MY+ QV R DI+YA L R+M+KPSK M KH LRYL GT+DF ITYK+G FKL FSD+N N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V ++ E G G +PVY DNT LH GNR++SS +HIALR+FFIR + S ++ L D+GTKH K R+++L+ LIN V
Sbjct: 378 MKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQ----LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLDV 658
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 251 bits (640), Expect = 2.590e-65 Identity = 135/281 (48.04%), Postives = 180/281 (64.06%), Query Frame = 3
Query: 777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
M + + R+ T+ + E LER+ M+ PT TPG G E+S QP++ LL++++ +++Q I GS+MY+ QV R DI+YA L R M+KPSK M KH LRYL GT+DF ITYK+G FKL FSD+N N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V + +PVY DNT LH GNR++SS +HIALR+FFIR + S ++ L D+GTKH R+++L+ LIN F V
Sbjct: 717 MEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFDV 997
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.970e-63 Identity = 133/281 (47.33%), Postives = 180/281 (64.06%), Query Frame = 3
Query: 777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
M + + R+ T+ + E LER+ ++ PT TPG G E+S QP++ LL++++ +++Q I GS+MY+ QV R DI+YA L R M+KPSK M KH LRYL GT+DF ITYK+G FKL FSD+N N PDNG S SS++ +L+NAP+SF+ GLQGLTA STME ELVA+AL M E+V + +PVY DNT LH GNR++SS +HIALR+FFIR + S ++ L D+GTKH K R+++L+ LIN F V
Sbjct: 1386 MEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFDV 1666
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 241 bits (614), Expect = 3.490e-63 Identity = 132/259 (50.97%), Postives = 169/259 (65.25%), Query Frame = 3
Query: 819 TGELERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEF 1592
T L+R+ M S P T G G ELS+ QP+E LLN E KQR+QAI GSVMYL QVTR DI+Y + R MS PSK M KHLLRYL G+ DF ITYK+G F LTA S+AN G+ DNG SMSS+I M+S AP S K GLQ LTA ST+E ELVA+AL MKE + + + S P++ID+T L+V GN+T+S H +H+ALR+F+IR + S ++ L D+GT++L K+R++YLI I F
Sbjct: 518 TSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 237 bits (605), Expect = 3.190e-62 Identity = 138/285 (48.42%), Postives = 179/285 (62.81%), Query Frame = 3
Query: 777 MGVTQGRKNGTVKYTGE------LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAESA-STT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
M + + R+ GT+ + E L+R+ M++ PT TPG+G S QP+E LLN+E+ +R+Q I G ++YL Q+ R DI+YA + L R M+KPSK M K RYL GT F I YK+G FKLTAF+D+N GN PDNG S SS + ML +AP++FK GLQ LT QSTMEVELVAAAL +KE+V +L E G G L VP+Y DNT LH GNR+YSS +HIALR+FFIR A + D+GTKHL K R++ L+ +I F V
Sbjct: 440 MEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFG----KELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 204 bits (518), Expect = 4.550e-56 Identity = 109/212 (51.42%), Postives = 136/212 (64.15%), Query Frame = 3
Query: 966 MYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFRV 1598
MY+ QV R DI+YA HL R M+KPSK K LRYL GT+DF ITYK+G FKL FSD+N N PDNG S SS++ ML+NAP+SF+ GLQGLTA STME ELVA+AL MKE+V + +PVY DNT LH GNR++SS +HIALR+FFIR + S ++ L +GTKH K R+++L+ IN F V
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFDV 212
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 216 bits (550), Expect = 5.930e-54 Identity = 129/259 (49.81%), Postives = 160/259 (61.78%), Query Frame = 3
Query: 828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESV----VLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINE 1589
L+R+ M S+ P T G G ELS AI GSV+YL Q+TR DI+Y + L R MS PSK M KHLLRYL G+ DF ITYK+G F LTA SDAN GN PDN SMSS+I M+S APVSFK GLQ LTA ST+E ELVAAAL MKE++ ++ E G G R S P+YI NT LHV GN+T+S +H+ALR+F+IR + S ++ L D+GTKHL K+R++ LI I +
Sbjct: 452 LDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFR----SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 197 bits (502), Expect = 6.220e-53 Identity = 110/261 (42.15%), Postives = 159/261 (60.92%), Query Frame = 3
Query: 828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-----SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFR 1595
L+RY M NP TPG G ELS +QP+++LL E+KQRFQ ITGS++YL Q TR D+ YA++ LTR + P++ MA KHLLRYL GT D I YK+G F+L+ F+D++ G PDNG S + ++ L +S+ Q L AQ+T+E EL A + +E+V + + + SVP+ D+T AL VA N +SS +HIALR+FF+R + S T L D+ TKHL K+R+ +++LI +++
Sbjct: 41 LQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK-TFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSAT----MLADIATKHLPKQRFATIMQLIKDYK 296
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 200 bits (509), Expect = 7.060e-50 Identity = 112/261 (42.91%), Postives = 160/261 (61.30%), Query Frame = 3
Query: 828 LERYRMASYNPTYTPGMGKELSLDQPKEKLLNKEDKQRFQAITGSVMYLGQVTR*DILYAINHLTRTMSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNGNSMSSFIAMLSNAPVSFKVGLQGLTAQSTMEVELVAAALMMKESVVLLEHGEGVRIRHALDSVPVYIDNTLALHVAGNRTYSSHVRHIALRYFFIRSWPRRAE-----SASTT*RQNQLGDVGTKHLGKRRYRYLIKLINEFR 1595
L+RY M NP TPG G ELS +QP+++LL EDKQRFQAITGS++YL Q TR D+ YA++ LTR + P++ MA KHLLRYL GT D I YK+G F+L+ F+D++ G PDNG S + ++ L +S+ Q L AQ+T+E EL A + +E+V + + + SVP+ D+T AL VA N +SS +HIALR+FF+R + S T L D+ TKHL K+R+ +++LI +++
Sbjct: 478 LQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK-TFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSAT----MLADIATKHLPKQRFATIMQLIKDYK 733 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25986.7090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25986.7090.1 >prot_H-paniculata_contig25986.7090.1 ID=prot_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp MSKPSKARMAVTKHLLRYLIGTMDFVITYKQGSFKLTAFSDANCGNKPDNback to top mRNA from alignment at H-paniculata_contig25986:68..3537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25986.7090.1 ID=mRNA_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3470bp|location=Sequence derived from alignment at H-paniculata_contig25986:68..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25986:68..3537+ >mRNA_H-paniculata_contig25986.7090.1 ID=mRNA_H-paniculata_contig25986.7090.1|Name=mRNA_H-paniculata_contig25986.7090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig25986:68..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |