mRNA_H-paniculata_contig25969.7082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25969.7082.1
Unique NamemRNA_H-paniculata_contig25969.7082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25969.7082.1 vs. uniprot
Match: D7FXW2_ECTSI (Phosphotransferase system component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW2_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.290e-8
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    4 SNNGRGDPTYKAAEISWTLLEVNAAAKHQDARIAAALRAGVIGREISVTTN---GARNGQAP-LLPLHGLVAISCDVRQMN 234
            +  G GD     A    TLL+VN AA+ +D +IAAALR G  GR     T    GA    +P +LPLHGLVAISCDV  +N
Sbjct:  291 AGTGEGDEALVVA-AEGTLLDVNMAARKEDVKIAAALREGC-GRHDDAPTQSPRGANTATSPKMLPLHGLVAISCDVHGVN 369
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BLAST of mRNA_H-paniculata_contig25969.7082.1 vs. uniprot
Match: A0A6H5L9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M4_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.510e-7
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   55 TLLEVNAAAKHQDARIAAALRAGVIGREISVTTNGARNGQAP----LLPLHGLVAISCDVRQMN 234
            TLL+VN AA+ +D +IAAALR G  GR+        R   A     +LPLHGLVAISCDV  +N
Sbjct:   12 TLLDVNMAARKEDVKIAAALREGC-GRQDDAPKQSPRGANAATSPKMLPLHGLVAISCDVHGVN 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25969.7082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW2_ECTSI3.290e-848.15Phosphotransferase system component n=1 Tax=Ectoca... [more]
A0A6H5L9M4_9PHAE7.510e-751.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25969contigH-paniculata_contig25969:854..1311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.7373538-CDS-H-paniculata_contig25969:855..10371622929773.7373538-CDS-H-paniculata_contig25969:855..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 856..1037 -
1691481004.980651-CDS-H-paniculata_contig25969:855..10371691481004.980651-CDS-H-paniculata_contig25969:855..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 856..1037 -
1622929773.7537398-CDS-H-paniculata_contig25969:1259..13111622929773.7537398-CDS-H-paniculata_contig25969:1259..1311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 1260..1311 -
1691481004.9912252-CDS-H-paniculata_contig25969:1259..13111691481004.9912252-CDS-H-paniculata_contig25969:1259..1311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 1260..1311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25969.7082.1prot_H-paniculata_contig25969.7082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25969 856..1311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25969.7082.1

>prot_H-paniculata_contig25969.7082.1 ID=prot_H-paniculata_contig25969.7082.1|Name=mRNA_H-paniculata_contig25969.7082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
PSNNGRGDPTYKAAEISWTLLEVNAAAKHQDARIAAALRAGVIGREISVT
TNGARNGQAPLLPLHGLVAISCDVRQMN
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mRNA from alignment at H-paniculata_contig25969:854..1311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25969.7082.1 ID=mRNA_H-paniculata_contig25969.7082.1|Name=mRNA_H-paniculata_contig25969.7082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig25969:854..1311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCGAATAATGGCAGAGGGGACCCAACATATAAAGCCGCAGAGATATC
ATGTGAGAGGGAAGGGAGGGCGTCCTTTTGACGTACGTACAGCTGTTGCT
GCTCGTTCATTCCTTTGTCCCCTCTGGTATTTGGTGTCCACCACACACCA
GAACAATGGGCATTATATCTCGTGCGCGTTTGTACTTCCGATTTTCAATA
CTAGCACTTTACGACCCCTTTCATCTAATAATCATCACCAACGCGGTGGG
TCGTCAATCCACGCTAAAACTCAGGGACACTGTTAGAGGTGAACGCGGCG
GCGAAACACCAGGATGCGAGAATCGCCGCAGCACTGCGGGCAGGGGTTAT
TGGACGCGAAATTTCGGTAACAACCAATGGCGCTAGGAACGGGCAGGCGC
CATTGTTGCCGTTGCACGGATTGGTGGCAATATCGTGCGACGTGCGACAG
ATGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25969:854..1311-

>mRNA_H-paniculata_contig25969.7082.1 ID=mRNA_H-paniculata_contig25969.7082.1|Name=mRNA_H-paniculata_contig25969.7082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig25969:854..1311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCGAATAATGGCAGAGGGGACCCAACATATAAAGCCGCAGAGATATC
ATCCGTCGAATAATGGCAGAGGGGACCCAACATATAAAGCCGCAGAGATA
TCATGGACACTGTTAGAGGTGAACGCGGCGGCGAAACACCAGGATGCGAG
AATCGCCGCAGCACTGCGGGCAGGGGTTATTGGACGCGAAATTTCGGTAA
CAACCAATGGCGCTAGGAACGGGCAGGCGCCATTGTTGCCGTTGCACGGA
TTGGTGGCAATATCGTGCGACGTGCGACAGATGAACGGACACTGTTAGAG
GTGAACGCGGCGGCGAAACACCAGGATGCGAGAATCGCCGCAGCACTGCG
GGCAGGGGTTATTGGACGCGAAATTTCGGTAACAACCAATGGCGCTAGGA
ACGGGCAGGCGCCATTGTTGCCGTTGCACGGATTGGTGGCAATATCGTGC
GACGTGCGACAGATGAAC
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