prot_H-paniculata_contig11095.708.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig11095.708.1
Unique Name	prot_H-paniculata_contig11095.708.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	597

Homology

[Close]

BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 6.050e-81
Identity = 265/654 (40.52%), Postives = 325/654 (49.69%), Query Frame = 0

Query:    1 LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVW-----------------ASRCSVVGNEDTWTP-TGGAGHTYTKNAAGHPSKTPCAAAGAPHNNPDMPIVIPHDPMLDALLYTPAREPEILPTVTSRGFWHEGGGGGVSVNGCGFSR--AGNVVTAG-----GYFQPEPLMVAPSVGR------AQLRVPMAPSRPQ---RQLSFEYGPA----METADSAVAPVAAAPTIGGIAKGFTTDFGITAVGADHHRCCAGFDDGGASSSVLSSPNKLTGADSFSE-EYDDDRHAFLRQQELANFVGPGYLAGAGRPGLVTPVARTALVDWLSRLHGSAPATAEGAKTAFVGGNALKLVAAASLALASKYEDTQPISLWGVAAAANSGICASPLTGGGGG-------------------YGDCSATVAMGIDGNCCGGSPGGRNGGDSGEFDVAAARKELAAMEMRVASALGFRLTVPTALSFLGVFVKRAVGLGYLSTSGQLAERVRLEAQKILLRVLRDRCSLEHPPSALAATALYWASCVTCPRQAAPASFAFFAVTGYQLDKLCRCLQDMENVRTGVGAGGRRYVEHWGXXXXXXXXXXXXXXFVXXXXXXXXWAGAAFPEHAASSLFGAGGGHPAIAAL 596
            +E FDAERFVDRLVED  P   + +G GG +GG        G VW                 A     V N D   P   G G  Y                     + DMP+++PHDP+LDA+ +TP R   +LP+  +  + H      V+V  CG  R  +G    AG       F+PE L   P          A L+VPMAP R     R+L     P     +++A+ +  P AAA  +  +A     +     +  +                       LTGAD+ S  EYDD+RHAFLR+QE A   G  Y+ G     +V P AR+A VDWLSRLHG+     +G     + G A+KL  AA L LASKY+D                                               +G   A  ++G+                    DV AARKELAA EM+VASALGFRLTVPT+LSFLGVF++RA GLGY+   G   ERVR EA++ILL +LR+ CSLEHPPSALAA+ALYWASCVT P  A P SFAF AVTGY+L++LC CL+DME VRTG   GGRRY                XXX  XXXXXXX WAGAAFPEHA +SLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAP---TAWGRGGLVGGG-------GRVWEXXXXXXXXXXXXXXXAAKLFQPVFNFDEHQPYLVGDGGGYXXXXX---XXXXXXXXXXXXXSQDMPMIVPHDPILDAI-FTPCRA--VLPS--THHYHHPAEAAPVAVT-CGLVRVPSGGRFGAGKKNEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERS--PAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXX---XXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGV---VVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXX----XXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTG---GGRRY--DGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LRC5_ECTSI	6.050e-81	40.52	Cyclin_C domain-containing protein n=2 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004367	Cyclin, C-terminal domain	SMART	SM01332	Cyclin_C_2	coord: 430..593 e-value: 0.0086 score: 25.3
IPR004367	Cyclin, C-terminal domain	PFAM	PF02984	Cyclin_C	coord: 430..529 e-value: 4.2E-7 score: 30.1
None	No IPR available	GENE3D	1.10.472.10		coord: 419..538 e-value: 1.1E-11 score: 47.0
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 322..427 e-value: 2.7E-4 score: 20.7
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINE	coord: 321..527
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 413..530
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 257..427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11095	contig	H-paniculata_contig11095:2359..4425 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11095.708.1	mRNA_H-paniculata_contig11095.708.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig11095 2359..4425 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig11095.708.1 ID=prot_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=597bp
LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVWASRCS
VVGNEDTWTPTGGAGHTYTKNAAGHPSKTPCAAAGAPHNNPDMPIVIPHD
PMLDALLYTPAREPEILPTVTSRGFWHEGGGGGVSVNGCGFSRAGNVVTA
GGYFQPEPLMVAPSVGRAQLRVPMAPSRPQRQLSFEYGPAMETADSAVAP
VAAAPTIGGIAKGFTTDFGITAVGADHHRCCAGFDDGGASSSVLSSPNKL
TGADSFSEEYDDDRHAFLRQQELANFVGPGYLAGAGRPGLVTPVARTALV
DWLSRLHGSAPATAEGAKTAFVGGNALKLVAAASLALASKYEDTQPISLW
GVAAAANSGICASPLTGGGGGYGDCSATVAMGIDGNCCGGSPGGRNGGDS
GEFDVAAARKELAAMEMRVASALGFRLTVPTALSFLGVFVKRAVGLGYLS
TSGQLAERVRLEAQKILLRVLRDRCSLEHPPSALAATALYWASCVTCPRQ
AAPASFAFFAVTGYQLDKLCRCLQDMENVRTGVGAGGRRYVEHWGGGGGG
GGGGGGGGGFVGAGGGGGGWAGAAFPEHAASSLFGAGGGHPAIAAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004367	Cyclin_C-dom
IPR006671	Cyclin_N
IPR039361	Cyclin
IPR036915	Cyclin-like_sf