Homology
BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot
Match:
D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)
HSP 1 Score: 276 bits (705), Expect = 6.050e-81
Identity = 265/654 (40.52%), Postives = 325/654 (49.69%), Query Frame = 1
Query: 1 LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVW-----------------ASRCSVVGNEDTWTP-TGGAGHTYTKNAAGHPSKTPCAAAGAPHNNPDMPIVIPHDPMLDALLYTPAREPEILPTVTSRGFWHEGGGGGVSVNGCGFSR--AGNVVTAG-----GYFQPEPLMVAPSVGR------AQLRVPMAPSRPQ---RQLSFEYGPA----METADSAVAPVAAAPTIGGIAKGFTTDFGITAVGADHHRCCAGFDDGGASSSVLSSPNKLTGADSFSE-EYDDDRHAFLRQQELANFVGPGYLAGAGRPGLVTPVARTALVDWLSRLHGSAPATAEGAKTAFVGGNALKLVAAASLALASKYEDTQPISLWGVAAAANSGICASPLTGGGGG-------------------YGDCSATVAMGIDGNCCGGSPGGRNGGDSGEFDVAAARKELAAMEMRVASALGFRLTVPTALSFLGVFVKRAVGLGYLSTSGQLAERVRLEAQKILLRVLRDRCSLEHPPSALAATALYWASCVTCPRQAAPASFAFFAVTGYQLDKLCRCLQDMENVRTGVGAGGRRYVEHWGXXXXXXXXXXXXXXFVXXXXXXXXWAGAAFPEHAASSLFGAGGGHPAIAAL 1788
+E FDAERFVDRLVED P + +G GG +GG G VW A V N D P G G Y + DMP+++PHDP+LDA+ +TP R +LP+ + + H V+V CG R +G AG F+PE L P A L+VPMAP R R+L P +++A+ + P AAA + +A + + + LTGAD+ S EYDD+RHAFLR+QE A G Y+ G +V P AR+A VDWLSRLHG+ +G + G A+KL AA L LASKY+D +G A ++G+ DV AARKELAA EM+VASALGFRLTVPT+LSFLGVF++RA GLGY+ G ERVR EA++ILL +LR+ CSLEHPPSALAA+ALYWASCVT P A P SFAF AVTGY+L++LC CL+DME VRTG GGRRY XXX XXXXXXX WAGAAFPEHA +SLFGAGGGHPAIAAL
Sbjct: 1 MEPFDAERFVDRLVEDPAP---TAWGRGGLVGGG-------GRVWEXXXXXXXXXXXXXXXAAKLFQPVFNFDEHQPYLVGDGGGYXXXXX---XXXXXXXXXXXXXSQDMPMIVPHDPILDAI-FTPCRA--VLPS--THHYHHPAEAAPVAVT-CGLVRVPSGGRFGAGKKNEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERS--PAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXX---XXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGV---VVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXX----XXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTG---GGRRY--DGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.05e-81 / Id = 40.52 Sequence D8LRC5_ECTSI
Match Name E-value Identity Description
D8LRC5_ECTSI 6.050e-81 40.52 Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Cyclin, C-terminal domain Ec32 ortholog Ec-06_003040.1 Exons 4 Model size 1791 Cds size 1791 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11095.708.1
>prot_H-paniculata_contig11095.708.1 ID=prot_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=597bp
LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVWASRCS back to top mRNA from alignment at H-paniculata_contig11095:2359..4425-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11095.708.1 ID=mRNA_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2067bp|location=Sequence derived from alignment at H-paniculata_contig11095:2359..4425- (Halopteris paniculata Hal_grac_a_UBK monoicous)TTGGAAGCGTTCGACGCGGAGAGGTTCGTCGACCGTCTCGTGGAGGACGA
TCCCCCTCCTTGGCGTAGTGACTTCGGGGGTGGTGGTGGGATCGGCGGCG
ATGCAGATCAAAACGCGTATCACGGGGACGTTTGGGCTAGCAGGTGTAGC
GTGGTTGGGAACGAGGACACATGGACTCCTACCGGAGGAGCAGGTCACAC
GTACACCAAAAATGCGGCGGGACACCCTTCCAAAA GTGGCTGTACCGGTG
CCCCAGCATCAAAATTATTCCTTCAAACCGCGTACGACTGGCCGCCCTCC
GCCCAGCAAAGCCAAACCCATCATGCCCTCGGACTCGGAGCTCCTTGCGC
TGCCGCCGGCGCCCCCCACAATAATCCAGACATGCCAATTGTAATTCCCC
ACGACCCAATGCTGGATGCTCTACTATATACGCCTGCTCGCGAGCCTGAA
ATTCTTCCGACGGTTACTTCCCGAGGTTTCTGGCACGAGGGTGGTGGCGG
CGGTGTTTCGGTGAATGGTTGTGGCTTCTCTCGTGCCGGGAATGTTGTGA
CGGCCGGGGGTTACTTCCAACCGGAGCCGCTGATGGTGGCGCCGTCGGTG
GGGCGTGCGCAGCTACGGGTTCCTATGGCTCCCTCTCGGCCTCAGCGGCA
ATTGTCTTTTGAGTACGGCCCCGCTATGGAGACGGCGGATTCAGCGGTAG
CGCCAGTAGCAGCAGCGCCAACA GTAGCAGCAACTTTTGACGCATCGCTG
CTGCAGCAGACGCATAAGCAGCAGCTGGAGCAGCAGCAGTTGGAGCTGCA
GCTACAGCAGCGGGAGCAGATCGGGGGGATAGCCAAGGGGTTCACGACGG
ACTTCGGGATCACCGCCGTGGGGGCTGACCACCACCGTTGTTGTGCTGGC
TTTGATGACGGAGGCGCGTCGTCGTCGGTATTATCGTCACCTAACAAGCT
TACTGGAGCCGACTCATTCTCGGAAGAATACGACGACGACAGACACGCTT
TCCTCCGCCAGCAAGAGCTCGCGAACTTCGTGGGCCCGGGCTACCTAGCG
GGCGCCGGGCGCCCTGGGCTCGTAACGCCCGTGGCACGCACAGCCTTGGT
AGACTGGCTGTCACGGCTGCACGGCTCCGCGCCCGC GTCGTCAGGCGGTG
GCCCGCCCTTGTCCACGGAAACTCTATTCCTCGCGGTTAATGTCGTGGAC
AGGTTCTTGAGTACCGCCGAGGGGGCGAAAACCGCATTCGTTGGAGGCAA
CGCACTCAAGCTGGTCGCCGCCGCTTCTCTAGCCCTGGCCTCCAAATACG
AGGACACGCAGCCCATCTCCCTGTGGGGCGTGGCGGCAGCAGCAAACTCA
GGCATATGCGCTTCACCGCTGACCGGTGGTGGTGGGGGTTATGGCGACTG
CTCTGCTACTGTGGCTATGGGAATCGACGGTAACTGCTGCGGTGGCAGCC
CTGGCGGCAGGAATGGCGGGGACAGCGGGGAGTTTGATGTTGCGGCGGCG
CGGAAAGAGCTAGCGGCGATGGAGATGCGAGTGGCTTCAGCTCTCGGGTT
TCGCCTTACTGTCCCTACGGCCCTGTCGTTTCTGGGAGTCTTCGTCAAAC
GCGCGGTCGGGCTGGGCTACCTGTCGACGTCTGGCCAACTAGCCGAGAGA
GTTCGGCTCGAGGCGCAGAAGATATTGCTGCGTGTGTTGCGTGACCGTTG
TTCCCTCGAACATCCGCCGTCCGCACTGGCCGCCACCGCCCTGTACTGGG
CGTCGTGCGTCACGTGCCCCAGGCAAGCCGCCCCCGCCTCGTTCGCGTTC
TTCGCTGTGACCGGCTATCAGTTGGACAAGCTCTGCCGTTGCCTACAGGA
CATGGAGAACGTTCGTACCGGGGTTGGCGCAGGGGGCAGACGTTACGTGG
AGCACTGGGGTGGTGGTGGAGGCGGCGGGGGCGGCGGCGGCGGCGGCGGC
GGGTTTGTCGGCGCGGGAGGGGGCGGTGGTGGCTGGGCCGGCGCGGCTTT
CCCCGAGCACGCTGCTAGTAGCCTGTTTGGAGCAGGTGGTGGACATCCTG
CGATTGCGGCCCTATGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig11095:2359..4425-
>mRNA_H-paniculata_contig11095.708.1 ID=mRNA_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3582bp|location=Sequence derived from alignment at H-paniculata_contig11095:2359..4425- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top