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Homology
BLAST of mRNA_H-paniculata_contig11095.708.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI) HSP 1 Score: 276 bits (705), Expect = 6.050e-81 Identity = 265/654 (40.52%), Postives = 325/654 (49.69%), Query Frame = 1
Query: 1 LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVW-----------------ASRCSVVGNEDTWTP-TGGAGHTYTKNAAGHPSKTPCAAAGAPHNNPDMPIVIPHDPMLDALLYTPAREPEILPTVTSRGFWHEGGGGGVSVNGCGFSR--AGNVVTAG-----GYFQPEPLMVAPSVGR------AQLRVPMAPSRPQ---RQLSFEYGPA----METADSAVAPVAAAPTIGGIAKGFTTDFGITAVGADHHRCCAGFDDGGASSSVLSSPNKLTGADSFSE-EYDDDRHAFLRQQELANFVGPGYLAGAGRPGLVTPVARTALVDWLSRLHGSAPATAEGAKTAFVGGNALKLVAAASLALASKYEDTQPISLWGVAAAANSGICASPLTGGGGG-------------------YGDCSATVAMGIDGNCCGGSPGGRNGGDSGEFDVAAARKELAAMEMRVASALGFRLTVPTALSFLGVFVKRAVGLGYLSTSGQLAERVRLEAQKILLRVLRDRCSLEHPPSALAATALYWASCVTCPRQAAPASFAFFAVTGYQLDKLCRCLQDMENVRTGVGAGGRRYVEHWGXXXXXXXXXXXXXXFVXXXXXXXXWAGAAFPEHAASSLFGAGGGHPAIAAL 1788
+E FDAERFVDRLVED P + +G GG +GG G VW A V N D P G G Y + DMP+++PHDP+LDA+ +TP R +LP+ + + H V+V CG R +G AG F+PE L P A L+VPMAP R R+L P +++A+ + P AAA + +A + + + LTGAD+ S EYDD+RHAFLR+QE A G Y+ G +V P AR+A VDWLSRLHG+ +G + G A+KL AA L LASKY+D +G A ++G+ DV AARKELAA EM+VASALGFRLTVPT+LSFLGVF++RA GLGY+ G ERVR EA++ILL +LR+ CSLEHPPSALAA+ALYWASCVT P A P SFAF AVTGY+L++LC CL+DME VRTG GGRRY XXX XXXXXXX WAGAAFPEHA +SLFGAGGGHPAIAAL
Sbjct: 1 MEPFDAERFVDRLVEDPAP---TAWGRGGLVGGG-------GRVWEXXXXXXXXXXXXXXXAAKLFQPVFNFDEHQPYLVGDGGGYXXXXX---XXXXXXXXXXXXXSQDMPMIVPHDPILDAI-FTPCRA--VLPS--THHYHHPAEAAPVAVT-CGLVRVPSGGRFGAGKKNEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSAERS--PAAAAARLVAVATYLNKEENSNNIPVEFSPSXXXXXXXXX---XXXXXXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYITGGV---VVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLGPAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXX----XXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTG---GGRRY--DGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Cyclin, C-terminal domain |
| Ec32 ortholog | Ec-06_003040.1 |
| Exons | 4 |
| Model size | 1791 |
| Cds size | 1791 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11095.708.1 >prot_H-paniculata_contig11095.708.1 ID=prot_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=597bp
LEAFDAERFVDRLVEDDPPPWRSDFGGGGGIGGDADQNAYHGDVWASRCS
VVGNEDTWTPTGGAGHTYTKNAAGHPSKTPCAAAGAPHNNPDMPIVIPHD
PMLDALLYTPAREPEILPTVTSRGFWHEGGGGGVSVNGCGFSRAGNVVTA
GGYFQPEPLMVAPSVGRAQLRVPMAPSRPQRQLSFEYGPAMETADSAVAP
VAAAPTIGGIAKGFTTDFGITAVGADHHRCCAGFDDGGASSSVLSSPNKL
TGADSFSEEYDDDRHAFLRQQELANFVGPGYLAGAGRPGLVTPVARTALV
DWLSRLHGSAPATAEGAKTAFVGGNALKLVAAASLALASKYEDTQPISLW
GVAAAANSGICASPLTGGGGGYGDCSATVAMGIDGNCCGGSPGGRNGGDS
GEFDVAAARKELAAMEMRVASALGFRLTVPTALSFLGVFVKRAVGLGYLS
TSGQLAERVRLEAQKILLRVLRDRCSLEHPPSALAATALYWASCVTCPRQ
AAPASFAFFAVTGYQLDKLCRCLQDMENVRTGVGAGGRRYVEHWGGGGGG
GGGGGGGGGFVGAGGGGGGWAGAAFPEHAASSLFGAGGGHPAIAAL* back to topmRNA from alignment at H-paniculata_contig11095:2359..4425- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11095.708.1 ID=mRNA_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2067bp|location=Sequence derived from alignment at H-paniculata_contig11095:2359..4425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAAGCGTTCGACGCGGAGAGGTTCGTCGACCGTCTCGTGGAGGACGA
TCCCCCTCCTTGGCGTAGTGACTTCGGGGGTGGTGGTGGGATCGGCGGCG
ATGCAGATCAAAACGCGTATCACGGGGACGTTTGGGCTAGCAGGTGTAGC
GTGGTTGGGAACGAGGACACATGGACTCCTACCGGAGGAGCAGGTCACAC
GTACACCAAAAATGCGGCGGGACACCCTTCCAAAAGTGGCTGTACCGGTG
CCCCAGCATCAAAATTATTCCTTCAAACCGCGTACGACTGGCCGCCCTCC
GCCCAGCAAAGCCAAACCCATCATGCCCTCGGACTCGGAGCTCCTTGCGC
TGCCGCCGGCGCCCCCCACAATAATCCAGACATGCCAATTGTAATTCCCC
ACGACCCAATGCTGGATGCTCTACTATATACGCCTGCTCGCGAGCCTGAA
ATTCTTCCGACGGTTACTTCCCGAGGTTTCTGGCACGAGGGTGGTGGCGG
CGGTGTTTCGGTGAATGGTTGTGGCTTCTCTCGTGCCGGGAATGTTGTGA
CGGCCGGGGGTTACTTCCAACCGGAGCCGCTGATGGTGGCGCCGTCGGTG
GGGCGTGCGCAGCTACGGGTTCCTATGGCTCCCTCTCGGCCTCAGCGGCA
ATTGTCTTTTGAGTACGGCCCCGCTATGGAGACGGCGGATTCAGCGGTAG
CGCCAGTAGCAGCAGCGCCAACAGTAGCAGCAACTTTTGACGCATCGCTG
CTGCAGCAGACGCATAAGCAGCAGCTGGAGCAGCAGCAGTTGGAGCTGCA
GCTACAGCAGCGGGAGCAGATCGGGGGGATAGCCAAGGGGTTCACGACGG
ACTTCGGGATCACCGCCGTGGGGGCTGACCACCACCGTTGTTGTGCTGGC
TTTGATGACGGAGGCGCGTCGTCGTCGGTATTATCGTCACCTAACAAGCT
TACTGGAGCCGACTCATTCTCGGAAGAATACGACGACGACAGACACGCTT
TCCTCCGCCAGCAAGAGCTCGCGAACTTCGTGGGCCCGGGCTACCTAGCG
GGCGCCGGGCGCCCTGGGCTCGTAACGCCCGTGGCACGCACAGCCTTGGT
AGACTGGCTGTCACGGCTGCACGGCTCCGCGCCCGCGTCGTCAGGCGGTG
GCCCGCCCTTGTCCACGGAAACTCTATTCCTCGCGGTTAATGTCGTGGAC
AGGTTCTTGAGTACCGCCGAGGGGGCGAAAACCGCATTCGTTGGAGGCAA
CGCACTCAAGCTGGTCGCCGCCGCTTCTCTAGCCCTGGCCTCCAAATACG
AGGACACGCAGCCCATCTCCCTGTGGGGCGTGGCGGCAGCAGCAAACTCA
GGCATATGCGCTTCACCGCTGACCGGTGGTGGTGGGGGTTATGGCGACTG
CTCTGCTACTGTGGCTATGGGAATCGACGGTAACTGCTGCGGTGGCAGCC
CTGGCGGCAGGAATGGCGGGGACAGCGGGGAGTTTGATGTTGCGGCGGCG
CGGAAAGAGCTAGCGGCGATGGAGATGCGAGTGGCTTCAGCTCTCGGGTT
TCGCCTTACTGTCCCTACGGCCCTGTCGTTTCTGGGAGTCTTCGTCAAAC
GCGCGGTCGGGCTGGGCTACCTGTCGACGTCTGGCCAACTAGCCGAGAGA
GTTCGGCTCGAGGCGCAGAAGATATTGCTGCGTGTGTTGCGTGACCGTTG
TTCCCTCGAACATCCGCCGTCCGCACTGGCCGCCACCGCCCTGTACTGGG
CGTCGTGCGTCACGTGCCCCAGGCAAGCCGCCCCCGCCTCGTTCGCGTTC
TTCGCTGTGACCGGCTATCAGTTGGACAAGCTCTGCCGTTGCCTACAGGA
CATGGAGAACGTTCGTACCGGGGTTGGCGCAGGGGGCAGACGTTACGTGG
AGCACTGGGGTGGTGGTGGAGGCGGCGGGGGCGGCGGCGGCGGCGGCGGC
GGGTTTGTCGGCGCGGGAGGGGGCGGTGGTGGCTGGGCCGGCGCGGCTTT
CCCCGAGCACGCTGCTAGTAGCCTGTTTGGAGCAGGTGGTGGACATCCTG
CGATTGCGGCCCTATGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig11095:2359..4425- >mRNA_H-paniculata_contig11095.708.1 ID=mRNA_H-paniculata_contig11095.708.1|Name=mRNA_H-paniculata_contig11095.708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3582bp|location=Sequence derived from alignment at H-paniculata_contig11095:2359..4425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAAGCGTTCGACGCGGAGAGGTTCGTCGACCGTCTCGTGGAGGACGA
TCCCCCTCCTTGGCGTAGTGACTTCGGGGGTGGTGGTGGGATCGGCGGCG
ATGCAGATCAAAACGCGTATCACGGGGACGTTTGGGCTAGCAGGTGTAGC
GTGGTTGGGAACGAGGACACATGGACTCCTACCGGAGGAGCAGGTCACAC
GTACACCAAAAATGCGGCGGGACACCCTTCCAAAATTGGAAGCGTTCGAC
GCGGAGAGGTTCGTCGACCGTCTCGTGGAGGACGATCCCCCTCCTTGGCG
TAGTGACTTCGGGGGTGGTGGTGGGATCGGCGGCGATGCAGATCAAAACG
CGTATCACGGGGACGTTTGGGCTAGCAGGTGTAGCGTGGTTGGGAACGAG
GACACATGGACTCCTACCGGAGGAGCAGGTCACACGTACACCAAAAATGC
GGCGGGACACCCTTCCAAAACTCCTTGCGCTGCCGCCGGCGCCCCCCACA
ATAATCCAGACATGCCAATTGTAATTCCCCACGACCCAATGCTGGATGCT
CTACTATATACGCCTGCTCGCGAGCCTGAAATTCTTCCGACGGTTACTTC
CCGAGGTTTCTGGCACGAGGGTGGTGGCGGCGGTGTTTCGGTGAATGGTT
GTGGCTTCTCTCGTGCCGGGAATGTTGTGACGGCCGGGGGTTACTTCCAA
CCGGAGCCGCTGATGGTGGCGCCGTCGGTGGGGCGTGCGCAGCTACGGGT
TCCTATGGCTCCCTCTCGGCCTCAGCGGCAATTGTCTTTTGAGTACGGCC
CCGCTATGGAGACGGCGGATTCAGCGGTAGCGCCAGTAGCAGCAGCGCCA
ACACTCCTTGCGCTGCCGCCGGCGCCCCCCACAATAATCCAGACATGCCA
ATTGTAATTCCCCACGACCCAATGCTGGATGCTCTACTATATACGCCTGC
TCGCGAGCCTGAAATTCTTCCGACGGTTACTTCCCGAGGTTTCTGGCACG
AGGGTGGTGGCGGCGGTGTTTCGGTGAATGGTTGTGGCTTCTCTCGTGCC
GGGAATGTTGTGACGGCCGGGGGTTACTTCCAACCGGAGCCGCTGATGGT
GGCGCCGTCGGTGGGGCGTGCGCAGCTACGGGTTCCTATGGCTCCCTCTC
GGCCTCAGCGGCAATTGTCTTTTGAGTACGGCCCCGCTATGGAGACGGCG
GATTCAGCGGTAGCGCCAGTAGCAGCAGCGCCAACAATCGGGGGGATAGC
CAAGGGGTTCACGACGGACTTCGGGATCACCGCCGTGGGGGCTGACCACC
ACCGTTGTTGTGCTGGCTTTGATGACGGAGGCGCGTCGTCGTCGGTATTA
TCGTCACCTAACAAGCTTACTGGAGCCGACTCATTCTCGGAAGAATACGA
CGACGACAGACACGCTTTCCTCCGCCAGCAAGAGCTCGCGAACTTCGTGG
GCCCGGGCTACCTAGCGGGCGCCGGGCGCCCTGGGCTCGTAACGCCCGTG
GCACGCACAGCCTTGGTAGACTGGCTGTCACGGCTGCACGGCTCCGCGCC
CGCATCGGGGGGATAGCCAAGGGGTTCACGACGGACTTCGGGATCACCGC
CGTGGGGGCTGACCACCACCGTTGTTGTGCTGGCTTTGATGACGGAGGCG
CGTCGTCGTCGGTATTATCGTCACCTAACAAGCTTACTGGAGCCGACTCA
TTCTCGGAAGAATACGACGACGACAGACACGCTTTCCTCCGCCAGCAAGA
GCTCGCGAACTTCGTGGGCCCGGGCTACCTAGCGGGCGCCGGGCGCCCTG
GGCTCGTAACGCCCGTGGCACGCACAGCCTTGGTAGACTGGCTGTCACGG
CTGCACGGCTCCGCGCCCGCTACCGCCGAGGGGGCGAAAACCGCATTCGT
TGGAGGCAACGCACTCAAGCTGGTCGCCGCCGCTTCTCTAGCCCTGGCCT
CCAAATACGAGGACACGCAGCCCATCTCCCTGTGGGGCGTGGCGGCAGCA
GCAAACTCAGGCATATGCGCTTCACCGCTGACCGGTGGTGGTGGGGGTTA
TGGCGACTGCTCTGCTACTGTGGCTATGGGAATCGACGGTAACTGCTGCG
GTGGCAGCCCTGGCGGCAGGAATGGCGGGGACAGCGGGGAGTTTGATGTT
GCGGCGGCGCGGAAAGAGCTAGCGGCGATGGAGATGCGAGTGGCTTCAGC
TCTCGGGTTTCGCCTTACTGTCCCTACGGCCCTGTCGTTTCTGGGAGTCT
TCGTCAAACGCGCGGTCGGGCTGGGCTACCTGTCGACGTCTGGCCAACTA
GCCGAGAGAGTTCGGCTCGAGGCGCAGAAGATATTGCTGCGTGTGTTGCG
TGACCGTTGTTCCCTCGAACATCCGCCGTCCGCACTGGCCGCCACCGCCC
TGTACTGGGCGTCGTGCGTCACGTGCCCCAGGCAAGCCGCCCCCGCCTCG
TTCGCGTTCTTCGCTGTGACCGGCTATCAGTTGGACAAGCTCTGCCGTTG
CCTACAGGACATGGAGAACGTTCGTACCGGGGTTGGCGCAGGGGGCAGAC
GTTACGTGGAGCACTGGGGTGGTGGTGGAGGCGGCGGGGGCGGCGGCGGC
GGCGGCGGCGGGTTTGTCGGCGCGGGAGGGGGCGGTGGTGGCTGGGCCGG
CGCGGCTTTCCCCGAGCACGCTGCTAGTAGCCTGTTTGGAGCAGGTGGTG
GACATCCTGCGATTGCGGCCCTATGATACCGCCGAGGGGGCGAAAACCGC
ATTCGTTGGAGGCAACGCACTCAAGCTGGTCGCCGCCGCTTCTCTAGCCC
TGGCCTCCAAATACGAGGACACGCAGCCCATCTCCCTGTGGGGCGTGGCG
GCAGCAGCAAACTCAGGCATATGCGCTTCACCGCTGACCGGTGGTGGTGG
GGGTTATGGCGACTGCTCTGCTACTGTGGCTATGGGAATCGACGGTAACT
GCTGCGGTGGCAGCCCTGGCGGCAGGAATGGCGGGGACAGCGGGGAGTTT
GATGTTGCGGCGGCGCGGAAAGAGCTAGCGGCGATGGAGATGCGAGTGGC
TTCAGCTCTCGGGTTTCGCCTTACTGTCCCTACGGCCCTGTCGTTTCTGG
GAGTCTTCGTCAAACGCGCGGTCGGGCTGGGCTACCTGTCGACGTCTGGC
CAACTAGCCGAGAGAGTTCGGCTCGAGGCGCAGAAGATATTGCTGCGTGT
GTTGCGTGACCGTTGTTCCCTCGAACATCCGCCGTCCGCACTGGCCGCCA
CCGCCCTGTACTGGGCGTCGTGCGTCACGTGCCCCAGGCAAGCCGCCCCC
GCCTCGTTCGCGTTCTTCGCTGTGACCGGCTATCAGTTGGACAAGCTCTG
CCGTTGCCTACAGGACATGGAGAACGTTCGTACCGGGGTTGGCGCAGGGG
GCAGACGTTACGTGGAGCACTGGGGTGGTGGTGGAGGCGGCGGGGGCGGC
GGCGGCGGCGGCGGCGGGTTTGTCGGCGCGGGAGGGGGCGGTGGTGGCTG
GGCCGGCGCGGCTTTCCCCGAGCACGCTGCTAGTAGCCTGTTTGGAGCAG
GTGGTGGACATCCTGCGATTGCGGCCCTATGA back to top
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