prot_H-paniculata_contig25952.7078.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25952.7078.1
Unique Nameprot_H-paniculata_contig25952.7078.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length118
Homology
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.210e-18
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  +F+  P+ A+ +  +A A  KG  + H  V+QA+     K    +R P
Sbjct:  127 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNLAHWDVKQAYTHAKLKEEIYLRFP 239          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.970e-18
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+    + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  ++ G+D+  + + +P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:   19 MKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFP 131          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.450e-18
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q  G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QAF+    K    +R P
Sbjct:  209 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFP 321          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5KGD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.060e-17
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K+   +R P
Sbjct:  170 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARIVARGFSQIPGTDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKKEIYLRFP 282          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-17
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M  E+ G  + GTF +  ELP GRKAIGSKWVL+WKT + G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  127 MKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 239          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.090e-17
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G IL  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:   35 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 147          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-17
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT + G I+  KAR V  G  ++ G+D+  + +  P+ A+    +A A  KG  + H  V+QA++    K    +R P
Sbjct:   35 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFP 147          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-17
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  K+R +  G  Q+ G+D+  +F+  P+ A+ +  +A A   G ++ H  V+QA++    K  + +R P
Sbjct:    1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFP 113          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.380e-17
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 112
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA+     K    +R P
Sbjct:  127 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLRFP 239          
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.450e-17
Identity = 48/121 (39.67%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVG-------YLRKRSSGVRCPV 113
            M +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ + A+A A  KG +  H  V+QA++        YLR+ ++G+   V
Sbjct:  327 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAASIKTAIAVATEKGKKHAHWDVKQAYIHAKQKEEIYLRRSTTGLAVTV 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE5.210e-1840.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE7.970e-1838.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE8.450e-1840.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGD1_9PHAE1.060e-1739.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRB0_9PHAE1.070e-1740.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.090e-1740.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.200e-1738.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE1.330e-1738.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.380e-1739.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE1.450e-1739.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 17..99
e-value: 6.3E-16
score: 58.7
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 13..98
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25952contigH-paniculata_contig25952:1576..1929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25952.7078.1mRNA_H-paniculata_contig25952.7078.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25952 1501..1987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25952.7078.1 ID=prot_H-paniculata_contig25952.7078.1|Name=mRNA_H-paniculata_contig25952.7078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MDRELIGLKEAGTFVETELPVGRKAIGSKWVLTWKTDQDGFILKPKARFV
CLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVG
YLRKRSSGVRCPVRTRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like