mRNA_H-paniculata_contig25952.7078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25952.7078.1
Unique NamemRNA_H-paniculata_contig25952.7078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.190e-25
Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDVG  P  Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q  G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QAF+    K    +R P
Sbjct:  184 SDVGAVPMMYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFP 321
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.460e-24
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT + G I+  KAR V  G  ++ G+D+  + +  P+ A+    +A A  KG  + H  V+QA++    K    +R P
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFP 147
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.340e-24
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA+     K    +R P
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLRFP 239
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.190e-24
Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVG-------YLRKRSSGVRCPV 414
            SDV   P +YRDV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ + A+A A  KG +  H  V+QA++        YLR+ ++G+   V
Sbjct:  302 SDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAASIKTAIAVATEKGKKHAHWDVKQAYIHAKQKEEIYLRRSTTGLAVTV 447
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.560e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G IL  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 147
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.280e-24
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM  E+ G  + GTF +  ELP GRKAIGSKWVL+WKT + G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 239
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.350e-23
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  353 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 490
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.360e-23
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  494 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 631
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.750e-23
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  452 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFP 589
[Close]
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.820e-23
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 SDVGEAPKSYRDVLESKYKSVFLEAMDRELIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVGYLRKRSSGVRCP 411
            SDV   P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A+ +  +A A  KG ++ H  V+QA++    K    +R P
Sbjct:  642 SDVKAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLGHWDVKQAYIHAKLKEEIYLRFP 779
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25952.7078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9H4_9PHAE4.190e-2542.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.460e-2440.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.340e-2441.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE3.190e-2441.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE3.560e-2442.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRB0_9PHAE6.280e-2442.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.350e-2341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.360e-2341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.750e-2341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE1.820e-2341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25952contigH-paniculata_contig25952:1501..1987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score87.4
Seed ortholog evalue4.8e-15
Seed eggNOG ortholog5217.XP_007002288.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VFTM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons1
Model size487
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25952.7078.1prot_H-paniculata_contig25952.7078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25952 1576..1929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.275552-UTR-H-paniculata_contig25952:1500..15751622929773.275552-UTR-H-paniculata_contig25952:1500..1575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25952 1501..1575 +
1691481004.801585-UTR-H-paniculata_contig25952:1500..15751691481004.801585-UTR-H-paniculata_contig25952:1500..1575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25952 1501..1575 +
1622929773.2976027-UTR-H-paniculata_contig25952:1929..19871622929773.2976027-UTR-H-paniculata_contig25952:1929..1987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25952 1930..1987 +
1691481004.8226538-UTR-H-paniculata_contig25952:1929..19871691481004.8226538-UTR-H-paniculata_contig25952:1929..1987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25952 1930..1987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.2862306-CDS-H-paniculata_contig25952:1575..19291622929773.2862306-CDS-H-paniculata_contig25952:1575..1929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25952 1576..1929 +
1691481004.8132744-CDS-H-paniculata_contig25952:1575..19291691481004.8132744-CDS-H-paniculata_contig25952:1575..1929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25952 1576..1929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25952.7078.1

>prot_H-paniculata_contig25952.7078.1 ID=prot_H-paniculata_contig25952.7078.1|Name=mRNA_H-paniculata_contig25952.7078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MDRELIGLKEAGTFVETELPVGRKAIGSKWVLTWKTDQDGFILKPKARFV
CLGTLQVAGVDYDDTFAPTPATATSRLAVAHACRKGLQIFHLGVEQAFVG
YLRKRSSGVRCPVRTRT*
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mRNA from alignment at H-paniculata_contig25952:1501..1987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25952.7078.1 ID=mRNA_H-paniculata_contig25952.7078.1|Name=mRNA_H-paniculata_contig25952.7078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at H-paniculata_contig25952:1501..1987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGATGTAGGAGAAGCACCCAAGTCATATCGCGATGTACTAGAGTCTAA
GTACAAGAGTGTCTTTCTAGAGGCGATGGATAGGGAGCTGATCGGACTGA
AAGAAGCGGGCACGTTCGTAGAAACAGAACTACCCGTAGGACGGAAAGCC
ATAGGCTCTAAGTGGGTACTAACTTGGAAGACAGACCAGGATGGTTTTAT
CTTAAAGCCCAAAGCTAGGTTTGTTTGTCTGGGAACCCTCCAAGTTGCAG
GGGTAGACTATGACGATACATTCGCCCCCACCCCCGCAACTGCAACATCT
AGACTGGCGGTTGCACATGCATGCCGTAAAGGTCTGCAGATTTTTCACTT
GGGTGTCGAGCAGGCATTTGTAGGATATTTACGTAAGCGTAGCTCAGGGG
TCCGGTGCCCTGTCAGGACGCGTACTTAAGCTGATGAAATCGCTGTACGG
TCTCAAGCAGGCAGGTCGGACGTGGAACACCAAACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig25952:1501..1987+

>mRNA_H-paniculata_contig25952.7078.1 ID=mRNA_H-paniculata_contig25952.7078.1|Name=mRNA_H-paniculata_contig25952.7078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig25952:1501..1987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAGGGAGCTGATCGGACTGAAAGAAGCGGGCACGTTCGTAGAAAC
AGAACTACCCGTAGGACGGAAAGCCATAGGCTCTAAGTGGGTACTAACTT
GGAAGACAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTT
TGTCTGGGAACCCTCCAAGTTGCAGGGGTAGACTATGACGATACATTCGC
CCCCACCCCCGCAACTGCAACATCTAGACTGGCGGTTGCACATGCATGCC
GTAAAGGTCTGCAGATTTTTCACTTGGGTGTCGAGCAGGCATTTGTAGGA
TATTTACGTAAGCGTAGCTCAGGGGTCCGGTGCCCTGTCAGGACGCGTAC
TTAAATGGATAGGGAGCTGATCGGACTGAAAGAAGCGGGCACGTTCGTAG
AAACAGAACTACCCGTAGGACGGAAAGCCATAGGCTCTAAGTGGGTACTA
ACTTGGAAGACAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTT
TGTTTGTCTGGGAACCCTCCAAGTTGCAGGGGTAGACTATGACGATACAT
TCGCCCCCACCCCCGCAACTGCAACATCTAGACTGGCGGTTGCACATGCA
TGCCGTAAAGGTCTGCAGATTTTTCACTTGGGTGTCGAGCAGGCATTTGT
AGGATATTTACGTAAGCGTAGCTCAGGGGTCCGGTGCCCTGTCAGGACGC
GTACTTAA
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