prot_H-paniculata_contig2592.7071.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2592.7071.1
Unique Nameprot_H-paniculata_contig2592.7071.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length155
Homology
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.000e-27
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 135
            V RLR+S+YGL+QSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVD L+IAG  R+ VD+FK  IS+   MKDL  L  +LG+  +R+R    + ISQ +YI   L ++   +C+ V TP+EG
Sbjct:  118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG 252          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: Q9SZY0_ARATH (Putative retrotransposon n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SZY0_ARATH)

HSP 1 Score: 117 bits (293), Expect = 1.370e-27
Identity = 57/140 (40.71%), Postives = 91/140 (65.00%), Query Frame = 0
Query:    4 LRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYF-SRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISA 141
            L +++YGL+QS R WN   D +++ IG +RS  + C Y  S +DG +  LL+  YVD +++A R  + + E K  +S++F MKDLG+  R+LG+E  RDR  GT+T+SQ  Y+ + L+ Y+ D+C+ V TP+   +K+ A
Sbjct:  883 LNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLEDGSKVYLLI--YVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTLTLSQEDYLSKVLETYNVDQCKFVVTPLGAHLKMHA 1020          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A178VBX6_ARATH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VBX6_ARATH)

HSP 1 Score: 114 bits (286), Expect = 1.970e-27
Identity = 57/139 (41.01%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    4 LRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISA 141
            L+RS+YGL+QS R WN   D+F+ GI   RS  DSC+YF + +G +T + +++YVD ++IA   + +V+E K  +S+ F MKDLG   ++LG+E  RDR  G +T+SQ  Y+++ L+ +  D  + V TP+    K+ A
Sbjct:   47 LKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNG-DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRGAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKA 184          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.480e-27
Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 135
            V RLR+S+YGL+QSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVD L+I    RE V++FKH IS+ F MKDL  L  +LG+  +RDR    + ISQ +YI   L ++   +C+ V TP+EG
Sbjct:  558 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEG 692          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY)

HSP 1 Score: 116 bits (291), Expect = 2.520e-27
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 0
Query:    3 RLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISAPQSADKPSEPK 152
            RL++++YGL+QSGR W   LD+ +  +G ++   D CLY  ++DG    L+V+VYVD + +AG++   V  FKH++++RF + D G L+ +LG++  R+R N TI ++Q +YIR  L R+   E   V TP+  K  +SA QS   P E K
Sbjct:  708 RLKKALYGLKQSGRQWKKKLDEAMAELGFEKGQADECLYVLKEDG-HIVLMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDLTFILGVQVIRNRQNRTIHMNQTTYIRGFLDRFGMKESMPVHTPLVPKHNLSAMQSPSTPEEQK 857          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.900e-27
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 135
            V RLR+S+YGL+QSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVD L+I    RE V +FKH IS+ F MKDL  L  +LG+  +RDR    + ISQ +YI   L ++   +C+ V TP+EG
Sbjct:  118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEG 252          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 112 bits (280), Expect = 3.040e-27
Identity = 53/141 (37.59%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKIS 140
            V +L+RS+YGL+QS R WN T+DDF++ +G  +  +D C+Y  RD  G+  + V +YVD LV+A   +++ +  KH +S+RF M DLG L   LG+E + DR +G +T+ Q  +++  L ++   + + V TP +  +K++
Sbjct:  127 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 265          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.930e-27
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 135
            V RLR+S+YGL+QSGRNW+  +D +  G GL  S  D CLY      GE  L++V+YVD L+I    R   D+FK +IS+ F MKDL  L  +LG+  +R+R N T+ ISQ  YI   L ++   +C+ V TP+EG
Sbjct:  338 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEG 472          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A438JW73_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JW73_VITVI)

HSP 1 Score: 112 bits (279), Expect = 6.180e-27
Identity = 57/155 (36.77%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISAPQSADKPSEPKSL 154
            V RL++S+YGL+Q+ R W    D F+V  G DR+  D C++  +   GE  +++++YVD ++I G    K+D+ K+ +S+ F MKDLG  S++L I+  RDR NG   +SQ SYI + L +++  + + V +P+   +K+S+ QS  +  E K +
Sbjct:  124 VCRLKKSLYGLKQTSRQWYKKFDSFMVKHGYDRTAFDHCVFVKKFSYGEF-IILLLYVDDMLIVGHNTSKIDKLKNELSKSFEMKDLGLASQILSIKISRDRTNGKSWLSQESYIEKVLDKFNMGKAKPVSSPLGSHLKLSSKQSPSREKEKKEM 277          
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.320e-27
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 0
Query:    1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 135
            V RLR+S+YGL+QSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVD L+I    RE VD+FK  IS+ F MKDL  L  +LG+  +R+R    + ISQ +YI   L ++   +CR V TP+EG
Sbjct:  347 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEG 481          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA1.000e-2744.85Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
Q9SZY0_ARATH1.370e-2740.71Putative retrotransposon n=1 Tax=Arabidopsis thali... [more]
A0A178VBX6_ARATH1.970e-2741.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA2.480e-2745.59Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A2R6NJS8_9APHY2.520e-2740.40Integrase catalytic domain-containing protein n=1 ... [more]
W7TCB8_9STRA2.900e-2745.59Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
H3H934_PHYRM3.040e-2737.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA5.930e-2745.59Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A438JW73_VITVI6.180e-2736.77Retrovirus-related Pol polyprotein from transposon... [more]
W7TIM1_9STRA6.320e-2745.59Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..133
e-value: 4.8E-28
score: 98.4
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2592contigH-paniculata_contig2592:20138..20602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2592.7071.1mRNA_H-paniculata_contig2592.7071.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2592 20138..20602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2592.7071.1 ID=prot_H-paniculata_contig2592.7071.1|Name=mRNA_H-paniculata_contig2592.7071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGET
NLLVVVYVDGLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEARRD
RPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISAPQSADKPSE
PKSLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2