mRNA_H-paniculata_contig2592.7071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.000e-27 Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 405
V RLR+S+YGL+QSGRNW+ +D + G G S+ D CLY GE L++V+YVD L+IAG R+ VD+FK IS+ MKDL L +LG+ +R+R + ISQ +YI L ++ +C+ V TP+EG
Sbjct: 118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG 252
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: Q9SZY0_ARATH (Putative retrotransposon n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SZY0_ARATH) HSP 1 Score: 117 bits (293), Expect = 1.370e-27 Identity = 57/140 (40.71%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 10 LRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYF-SRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISA 423
L +++YGL+QS R WN D +++ IG +RS + C Y S +DG + LL+ YVD +++A R + + E K +S++F MKDLG+ R+LG+E RDR GT+T+SQ Y+ + L+ Y+ D+C+ V TP+ +K+ A
Sbjct: 883 LNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLEDGSKVYLLI--YVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTLTLSQEDYLSKVLETYNVDQCKFVVTPLGAHLKMHA 1020
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A178VBX6_ARATH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VBX6_ARATH) HSP 1 Score: 114 bits (286), Expect = 1.970e-27 Identity = 57/139 (41.01%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 10 LRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISA 423
L+RS+YGL+QS R WN D+F+ GI RS DSC+YF + +G +T + +++YVD ++IA + +V+E K +S+ F MKDLG ++LG+E RDR G +T+SQ Y+++ L+ + D + V TP+ K+ A
Sbjct: 47 LKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNG-DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRGAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKA 184
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.480e-27 Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 405
V RLR+S+YGL+QSGRNW+ +D + G G S+ D CLY GE L++V+YVD L+I RE V++FKH IS+ F MKDL L +LG+ +RDR + ISQ +YI L ++ +C+ V TP+EG
Sbjct: 558 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEG 692
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.900e-27 Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 405
V RLR+S+YGL+QSGRNW+ +D + G G S+ D CLY GE L++V+YVD L+I RE V +FKH IS+ F MKDL L +LG+ +RDR + ISQ +YI L ++ +C+ V TP+EG
Sbjct: 118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEG 252
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 112 bits (280), Expect = 3.040e-27 Identity = 53/141 (37.59%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKIS 420
V +L+RS+YGL+QS R WN T+DDF++ +G + +D C+Y RD G+ + V +YVD LV+A +++ + KH +S+RF M DLG L LG+E + DR +G +T+ Q +++ L ++ + + V TP + +K++
Sbjct: 127 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 265
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 115 bits (288), Expect = 5.930e-27 Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 405
V RLR+S+YGL+QSGRNW+ +D + G GL S D CLY GE L++V+YVD L+I R D+FK +IS+ F MKDL L +LG+ +R+R N T+ ISQ YI L ++ +C+ V TP+EG
Sbjct: 338 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEG 472
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A438JW73_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JW73_VITVI) HSP 1 Score: 112 bits (279), Expect = 6.180e-27 Identity = 57/155 (36.77%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEGKVKISAPQSADKPSEPKSL 462
V RL++S+YGL+Q+ R W D F+V G DR+ D C++ + GE +++++YVD ++I G K+D+ K+ +S+ F MKDLG S++L I+ RDR NG +SQ SYI + L +++ + + V +P+ +K+S+ QS + E K +
Sbjct: 124 VCRLKKSLYGLKQTSRQWYKKFDSFMVKHGYDRTAFDHCVFVKKFSYGEF-IILLLYVDDMLIVGHNTSKIDKLKNELSKSFEMKDLGLASQILSIKISRDRTNGKSWLSQESYIEKVLDKFNMGKAKPVSSPLGSHLKLSSKQSPSREKEKKEM 277
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 115 bits (288), Expect = 6.320e-27 Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVEG 405
V RLR+S+YGL+QSGRNW+ +D + G G S+ D CLY GE L++V+YVD L+I RE VD+FK IS+ F MKDL L +LG+ +R+R + ISQ +YI L ++ +CR V TP+EG
Sbjct: 347 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEG 481
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 114 bits (285), Expect = 6.370e-27 Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETNLLVVVYVDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEARRDRPNGTITISQGSYIREALKRYSFDECRGVPTPVE 402
V RL++S+YGL+QSGRNWN LD++L+ G R+ D C+Y + GE ++VV++VD L+IA +K+ +FK N+ +FRMKDLG +S LGI ++ NG I ++Q YI++ L R+ +C+ TP E
Sbjct: 288 VYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCE 418 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2592.7071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2592.7071.1 >prot_H-paniculata_contig2592.7071.1 ID=prot_H-paniculata_contig2592.7071.1|Name=mRNA_H-paniculata_contig2592.7071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp VRRLRRSVYGLEQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGETback to top mRNA from alignment at H-paniculata_contig2592:20138..20602+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2592.7071.1 ID=mRNA_H-paniculata_contig2592.7071.1|Name=mRNA_H-paniculata_contig2592.7071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=465bp|location=Sequence derived from alignment at H-paniculata_contig2592:20138..20602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2592:20138..20602+ >mRNA_H-paniculata_contig2592.7071.1 ID=mRNA_H-paniculata_contig2592.7071.1|Name=mRNA_H-paniculata_contig2592.7071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig2592:20138..20602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |