mRNA_H-paniculata_contig2592.7069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2592.7069.1
Unique NamemRNA_H-paniculata_contig2592.7069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2592.7069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2592contigH-paniculata_contig2592:9146..10370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size885
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2592.7069.1prot_H-paniculata_contig2592.7069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2592 9146..9613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.9380798-CDS-H-paniculata_contig2592:9145..96131622929771.9380798-CDS-H-paniculata_contig2592:9145..9613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 9146..9613 -
1691481004.3252466-CDS-H-paniculata_contig2592:9145..96131691481004.3252466-CDS-H-paniculata_contig2592:9145..9613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 9146..9613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.9611104-UTR-H-paniculata_contig2592:9613..99641622929771.9611104-UTR-H-paniculata_contig2592:9613..9964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2592 9614..9964 -
1691481004.3444345-UTR-H-paniculata_contig2592:9613..99641691481004.3444345-UTR-H-paniculata_contig2592:9613..9964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2592 9614..9964 -
1622929771.9807048-UTR-H-paniculata_contig2592:10306..103701622929771.9807048-UTR-H-paniculata_contig2592:10306..10370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2592 10307..10370 -
1691481004.3534756-UTR-H-paniculata_contig2592:10306..103701691481004.3534756-UTR-H-paniculata_contig2592:10306..10370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2592 10307..10370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2592.7069.1

>prot_H-paniculata_contig2592.7069.1 ID=prot_H-paniculata_contig2592.7069.1|Name=mRNA_H-paniculata_contig2592.7069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MLSLLSMVNPAGSSVPLVPATVSGSVVFFFGLLFVRPPPITSYNMPFGIS
SSSNTNNSSLDDNGISRHRHHRHSRATVATATLARPSDTKMSLGPSSLSS
SRKHSLKRQRLPNTSSRGYVYGTSEQVPVAPHCSVTSAEVEEGDSGGGGG
GVGASG
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mRNA from alignment at H-paniculata_contig2592:9146..10370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2592.7069.1 ID=mRNA_H-paniculata_contig2592.7069.1|Name=mRNA_H-paniculata_contig2592.7069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-paniculata_contig2592:9146..10370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTGCTTGGTGATCTCTCTGAAGGAAGTGCCTTACTTTGAAGACGCA
GGGGTTTCTGATTGGTGAGAAGAAAGGAATGCCACGCTGTCTGAGTTGTT
ATTATAGGCAAACAGCTGGCAAGGGGGAGGCTTGGTGTCGAAATAGATTA
TGTCAGGTGACAAGAAATGACGTCTGTTCTGGTCGTTCGCTGTTCGTGGA
GTAAAGTAAGTGAAACATGTCAACATCTGAACAGCAGCATCAGCAACGCA
CAACATGTAAGCAGTAGTAATGAAGTTGAGTTAGCTCTACTTTTGCCATG
TTTCCTCGCCTTACACATGATGCGGACATTGTGACCGCACACCCACAGCA
CGAAAACCTAAACTTGTCTGCCCTTGCTGATTTGCCACTTGTCCGTTTTA
TGTAAGGACCTTAAACAGAATTCTTGACCTGCTGTGTGCAACGCAACGCT
GGCAGATTTTAACGACTTCATAAGCCAGAGGTGCTACAACAAACGTGCCC
CACATTTATTACACAACGTTTAGCTTCACTCGAATCTAAGAGGGAGCGAA
GAGAGAGTGTAGGACTCTCCAAGACAGCGCGAAATACGAAAGTGGAGTGC
CCACTACCGGTCAGAGCAAGCCACAAGGAAGTCCGACCAGCAAGACAGGA
GACAAAAGACAAACGAGCAGCGCAGGAGCAGGAACAACAACGCCGCATCC
ACGGCGGGGGACCTTAGTTACCCCCGTGTGACCGCAAACAAAGCTAGCTG
CGCCGCCATGCTATCTTTGCTGTCGATGGTCAACCCCGCCGGCTCAAGCG
TACCCCTCGTCCCGGCCACCGTTTCGGGCAGCGTTGTGTTCTTCTTTGGT
CTGCTTTTCGTGCGCCCTCCCCCCATAACCTCGTACAACATGCCCTTCGG
CATAAGCTCCTCTTCCAATACAAACAACTCCTCCCTCGATGATAACGGCA
TCAGTCGCCACCGCCACCATCGTCATAGTCGCGCCACCGTGGCTACAGCC
ACCTTGGCCCGCCCTAGTGACACGAAAATGTCGCTCGGGCCGTCGTCATT
ATCATCATCGCGAAAACACTCGCTGAAACGGCAACGGTTACCGAACACCA
GCAGCAGGGGTTACGTGTATGGTACTAGCGAACAGGTACCAGTAGCGCCG
CATTGCTCGGTTACGAGTGCCGAAGTCGAGGAAGGGGATAGCGGCGGGGG
CGGCGGTGGTGTAGGGGCGAGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2592:9146..10370-

>mRNA_H-paniculata_contig2592.7069.1 ID=mRNA_H-paniculata_contig2592.7069.1|Name=mRNA_H-paniculata_contig2592.7069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig2592:9146..10370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTATCTTTGCTGTCGATGGTCAACCCCGCCGGCTCAAGCGTACCCCT
CGTCCCGGCCACCGTTTCGGGCAGCGTTGTGTTCTTCTTTGGTCTGCTTT
TCGTGCGCCCTCCCCCCATAACCTCGTACAACATGCCCTTCGGCATAAGC
TCCTCTTCCAATACAAACAACTCCTCCCTCGATGATAACGGCATCAGTCG
CCACCGCCACCATCGTCATAGTCGCGCCACCGTGGCTACAGCCACCTTGG
CCCGCCCTAGTGACACGAAAATGTCGCTCGGGCCGTCGTCATTATCATCA
TCGCGAAAACACTCGCTGAAACGGCAACGGTTACCGAACACCAGCAGCAG
GGGTTACGTGTATGGTACTAGCGAACAGGTACCAGTAGCGCCGCATTGCT
CGGTTACGAGTGCCGAAGTCGAGGAAGGGGATAGCGGCGGGGGCGGCGGT
GGTGTAGGGGCGAGTGGTATGCTATCTTTGCTGTCGATGGTCAACCCCGC
CGGCTCAAGCGTACCCCTCGTCCCGGCCACCGTTTCGGGCAGCGTTGTGT
TCTTCTTTGGTCTGCTTTTCGTGCGCCCTCCCCCCATAACCTCGTACAAC
ATGCCCTTCGGCATAAGCTCCTCTTCCAATACAAACAACTCCTCCCTCGA
TGATAACGGCATCAGTCGCCACCGCCACCATCGTCATAGTCGCGCCACCG
TGGCTACAGCCACCTTGGCCCGCCCTAGTGACACGAAAATGTCGCTCGGG
CCGTCGTCATTATCATCATCGCGAAAACACTCGCTGAAACGGCAACGGTT
ACCGAACACCAGCAGCAGGGGTTACGTGTATGGTACTAGCGAACAGGTAC
CAGTAGCGCCGCATTGCTCGGTTACGAGTGCCGAAGTCGAGGAAGGGGAT
AGCGGCGGGGGCGGCGGTGGTGTAGGGGCGAGTGGT
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