mRNA_H-paniculata_contig2591.7065.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2591.7065.1
Unique NamemRNA_H-paniculata_contig2591.7065.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2591.7065.1 vs. uniprot
Match: D8LQF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.790e-8
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  334 GADPEDSDFEDEEVDEDEAFNSADEDRYGDLMETILERTTNKQG 465
            G  PEDSDFEDEEVDED AF+SADE RYG+LM+TIL+R + KQG
Sbjct:   98 GPGPEDSDFEDEEVDEDAAFDSADEARYGELMDTILQRRSGKQG 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2591.7065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQF6_ECTSI7.790e-875.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2591contigH-paniculata_contig2591:8851..10884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D8LQF6
Preferred nameUTP14A
KEGG koko:K02350,ko:K14567
KEGG Pathwayko01100,ko01524,ko03008,ko03460,map01100,map01524,map03008,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016319,GO:0019953,GO:0022414,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051704,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.endopeptidase inhibitor activity
EggNOG OGsCOG5644@1,KOG2172@2759
EC2.7.7.7
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03400
Exons3
Model size473
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2591.7065.1prot_H-paniculata_contig2591.7065.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2591 8851..10884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.4267268-CDS-H-paniculata_contig2591:8850..91201622929771.4267268-CDS-H-paniculata_contig2591:8850..9120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 8851..9120 +
1691481004.0758994-CDS-H-paniculata_contig2591:8850..91201691481004.0758994-CDS-H-paniculata_contig2591:8850..9120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 8851..9120 +
1622929771.444181-CDS-H-paniculata_contig2591:10155..102981622929771.444181-CDS-H-paniculata_contig2591:10155..10298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 10156..10298 +
1691481004.0901256-CDS-H-paniculata_contig2591:10155..102981691481004.0901256-CDS-H-paniculata_contig2591:10155..10298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 10156..10298 +
1622929771.4593346-CDS-H-paniculata_contig2591:10826..108841622929771.4593346-CDS-H-paniculata_contig2591:10826..10884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 10827..10884 +
1691481004.1068673-CDS-H-paniculata_contig2591:10826..108841691481004.1068673-CDS-H-paniculata_contig2591:10826..10884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2591 10827..10884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2591.7065.1

>prot_H-paniculata_contig2591.7065.1 ID=prot_H-paniculata_contig2591.7065.1|Name=mRNA_H-paniculata_contig2591.7065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MPPGRSSGGSRPRGSGGGGGSGRGARGGRSRGGIRGGRGRGHGGGRGRAA
AGRGTALPSSFASKAAGSGKQQAGRNGRRGKTGDASYEFEDKAGKVDDRY
KYDDEAGDSDTGADPEDSDFEDEEVDEDEAFNSADEDRYGDLMETILERT
TNKQGKI
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mRNA from alignment at H-paniculata_contig2591:8851..10884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2591.7065.1 ID=mRNA_H-paniculata_contig2591.7065.1|Name=mRNA_H-paniculata_contig2591.7065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig2591:8851..10884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCAGGAAGGAGTAGCGGTGGCTCCAGGCCTCGAGGAAGTGGTGG
TGGTGGTGGTAGTGGTAGAGGAGCAAGAGGAGGAAGAAGTCGAGGAGGTA
TCAGAGGTGGTAGAGGTCGAGGACATGGAGGGGGGCGTGGGAGGGCTGCA
GCTGGACGAGGGACAGCGCTTCCTAGTTCTTTTGCGTCTAAGGCGGCTGG
CAGTGGCAAGCAGCAGGCTGGTCGGAACGGAAGGAGGGGAAAGACTGGTG
ACGCCAGCTATGAGTTCGAGGTAAGAGTATGCTTGTGAAAGCTATAGGTG
CGAATTATTTATGGCTGTATTTGTTTACATGTAGTTACCTTATGTGCACA
GCTCACGCCACCACTGATTTCCTGTTCAGCATGTTCTCTGGTTGAGTTTG
TCTGGGGATTGGGTTAATGTGGTGCCAAGTGTCCTCATCGTCTGCGCACG
ATATTTTCCCTCGTGCTACATGGTGTATCTCCTGTGAAAGCTGGTAGCAC
TCTAGCAATCGCATGGCCTGGTTGTGCATATTTTTTTCTTGGTCGACTGC
TGCATGCTGGGTTGTATTTGGTTTCTATTGTGAAGCTCAGTGATCCTAAG
ACAGCCAGTGAAACATACACAGGGTGTAGTCGCTAGATCTTCAATCTATA
GCTCGTCCGCACTGCCTAGATGTATGTCGACGGCGATGTACCGTAAAACA
ATTTCGCTTGCCCCGGCCATGCACCCGTATATGTTGCATTGTCCAACCGG
AGTATAGGATGTAGAGTACTGACTGTCTTATCTGCACAGACTAAATGTGT
ACATTCTGACTAGTTATTGAGTGAAAGCGATGATGTAAGATATGTCATGT
CGCAGACAACAAGCGAACGTGTACCCGATACCGCTCGAACCCAAGGGTAG
CCGTAGTACGCAATTGAAATTTATTGCAGACACGACATTTATCTATCCAG
ACCACAGGATGATACACCGCGTTGTTGCTGGACCGGGTGTATTGGGTGTG
CGATTTAGCGGTTGCAGGGCAAATCGCCACGATAAGGTACAATTTATCTG
TCTAAAGATGCATTCAGAATGGTATCCCCATCAAGGAAAGGTAGATATCA
TGTACACCGTACCTCAGTTCCTTGTACTGACTTGGTTGTAGGGGTCTAGT
ATACTGGACCTTAGCCGAACAAATACGACTCCATTTTTTGCTCGGCACCA
TCGGAACTTTTTGGCTGTACGCACACGGTTGTCGTGGTTTTTCCTTTTCT
ATATTGCACATATTGTCTTTCGCCGACGTGTCCGGGTGATCGGCTTGGTA
TTCAGGATAAAGCTGGCAAAGTGGACGATAGATACAAGTACGATGACGAG
GCCGGCGACAGCGACACAGGTGCTGACCCGGAGGACTCTGACTTTGAAGA
TGAGGAGGTGGATGAGGACGAGGCTTTCAACAGCGCCGATGAAGATCGGT
GAGGGACCTCATCAAGTGCTGGGGGCGAGGGGTGGTAGCTAGCGTAAATC
ATGGTTTTCGCCAATAGTGCTCAATGACTACAGAAGCCCGTTTGTAAAGT
ACCGATTCCCGGATGGTTTCAAAATGTCAGCCACGGTAGACCGCTTCTGT
CCGTATGCCTCCCGCTCCACAACTCGCTCCGCTCCCGATACACGCGCGGG
CGGGATACTAACTCGCCAAGATTTTCCCACAGTGTCATCTCCTGATGGTG
TTCTATACAACAATATGCGGTAATGGTACAACATCATTACCAGTCTACGG
TATTGGCCTAGGGTGTTGCTGTAGACGAGTGAAGTAGCCGGCCATACCAA
TTGGCAACAGTAGCTACACTGTTGGAGGTGTGTTTCCAATGCTCGAACGG
TGGTTTCGACACTAAAATAGAAAACACTACGACGGCACCAGCAAATTTAC
CAAAGCTAGCCCCGATCGAAGTAATGTAATCTATAGCGGTGCCCCCCCTT
CGGTGTTGTGTTTTTGTTTTGCGCAGCTATGGCGATCTCATGGAGACAAT
ATTGGAGAGGACAACCAACAAGCAAGGCAAGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig2591:8851..10884+

>mRNA_H-paniculata_contig2591.7065.1 ID=mRNA_H-paniculata_contig2591.7065.1|Name=mRNA_H-paniculata_contig2591.7065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig2591:8851..10884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCAGGAAGGAGTAGCGGTGGCTCCAGGCCTCGAGGAAGTGGTGG
TGGTGGTGGTAGTGGTAGAGGAGCAAGAGGAGGAAGAAGTCGAGGAGGTA
TCAGAGGTGGTAGAGGTCGAGGACATGGAGGGGGGCGTGGGAGGGCTGCA
GCTGGACGAGGGACAGCGCTTCCTAGTTCTTTTGCGTCTAAGGCGGCTGG
CAGTGGCAAGCAGCAGGCTGGTCGGAACGGAAGGAGGGGAAAGACTGGTG
ACGCCAGCTATGAGTTCGAGATGCCTCCAGGAAGGAGTAGCGGTGGCTCC
AGGCCTCGAGGAAGTGGTGGTGGTGGTGGTAGTGGTAGAGGAGCAAGAGG
AGGAAGAAGTCGAGGAGGTATCAGAGGTGGTAGAGGTCGAGGACATGGAG
GGGGGCGTGGGAGGGCTGCAGCTGGACGAGGGACAGCGCTTCCTAGTTCT
TTTGCGTCTAAGGCGGCTGGCAGTGGCAAGCAGCAGGCTGGTCGGAACGG
AAGGAGGGGAAAGACTGGTGACGCCAGCTATGAGTTCGAGGATAAAGCTG
GCAAAGTGGACGATAGATACAAGTACGATGACGAGGCCGGCGACAGCGAC
ACAGGTGCTGACCCGGAGGACTCTGACTTTGAAGATGAGGAGGTGGATGA
GGACGAGGCTTTCAACAGCGCCGATGAAGATCGGATAAAGCTGGCAAAGT
GGACGATAGATACAAGTACGATGACGAGGCCGGCGACAGCGACACAGGTG
CTGACCCGGAGGACTCTGACTTTGAAGATGAGGAGGTGGATGAGGACGAG
GCTTTCAACAGCGCCGATGAAGATCGCTATGGCGATCTCATGGAGACAAT
ATTGGAGAGGACAACCAACAAGCAAGGCAAGATTCTATGGCGATCTCATG
GAGACAATATTGGAGAGGACAACCAACAAGCAAGGCAAGATT
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