mRNA_H-paniculata_contig2590.7063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2590.7063.1
Unique NamemRNA_H-paniculata_contig2590.7063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2590.7063.1 vs. uniprot
Match: A0A6H5JD87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD87_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 4.420e-89
Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 3 
Query:  702 PEMVEAVFTLMREWINELPVPSLRWLEAWLDLAVSGMTVRHRGPARAVLNLIQACCAQRSDPTFTTAFSALLRDTRLGLAITRGLLSGLCGAMPSWMLDDLVATIRALFDTVNPASVSVWVEAVLQDSTFERYGVSDEGKIAFVRKLKEDLCCKDWRAFKAGLKAFCGGKKKGTGGTPPVHA 1247
            PE+VEA+F LM EW+ ELPVPSLRWLEAWL +AVSG+ VRHRGPARAVL LIQACC+QR  P FT  FSALLR T LG+A+ RGLLSG+CGAMPSWMLDDLV T+R+LFD+++PA+ S  ++AVL+D +FERY V++E K+AF RKLKED C KDWRAFKAGLKAFCGGKKKGTGGTPPVHA
Sbjct:   74 PELVEALFKLMAEWVKELPVPSLRWLEAWLSVAVSGLAVRHRGPARAVLGLIQACCSQRKSPQFTATFSALLRGTALGVALARGLLSGMCGAMPSWMLDDLVLTVRSLFDSLSPAAASSCIDAVLRDPSFERYSVTNEHKVAFSRKLKEDFCNKDWRAFKAGLKAFCGGKKKGTGGTPPVHA 255
[Close]
BLAST of mRNA_H-paniculata_contig2590.7063.1 vs. uniprot
Match: D7FSA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA3_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.340e-55
Identity = 141/350 (40.29%), Postives = 182/350 (52.00%), Query Frame = 3 
Query:   24 MVEAFGEGEEKVLSGICQVFEALVWAIAERLRQIE----VRHSSHDFAGAPPSSVPASNGDADVAILGVGSGGGELRGNNAE--------------SLKLAVALGDALAQSFLRRPSVRFLETLRCITKELATFDRCGIAGK*VLRGCQWICGWVFGVYVRSQRLVLSKVGGWVERP*SFLFSCGPHLRRPKL*LASVRLGEPMPLFGGNRSRGGGCSRKRGGGRSSRGKVRGCCRCRGGPDAHPEMVEAVFTLMREWINELPVPSLRWLEAWLDLAVSGMTVRHRGPARAVLNLIQACCAQRSDPTFTTAFSALLRDTRLGLAITRGLLSGLCGAMPSWMLDDLVATIR 1019
            MV A+  GEE +L+ +C +FEALV + + R+R  +     R   +   G   SS  +S+  A V     G                           L+++ ALGDALA++F R P  RFL +LRCIT EL    R   +                GV      + L +   WV++    L++            A V +G    +  G+         +    RSS   +       GG  A PE+VEA+F LM EW+ ELPVPSLRWLEAWL +AVSG+ VRHRGPARAVL LIQACC+QR  P FT  FSALLR T LG+A+TRGLLSG+CGAMPSWMLDD V T++
Sbjct:    1 MVAAYSLGEENILAHLCLLFEALVLSTSRRIRYFKGEALPRPGVNGNGGGVSSSTTSSHPIATVGRPEAGXXXXXXXXXXXXXXXXXXXXXXXXIGGLRVSTALGDALAEAFRRHPFHRFLVSLRCITAELPKLGRSFTSADP-------------GVAAAPPDMSL-RASEWVDQS---LWAAA----------AGVAVGGSNGMVVGS-------GNEHNSNRSSTDSI-------GGGGAPPELVEALFKLMAEWVKELPVPSLRWLEAWLSVAVSGLAVRHRGPARAVLGLIQACCSQRKSPQFTATFSALLRGTALGVALTRGLLSGMCGAMPSWMLDDHVLTVQ 309
[Close]
BLAST of mRNA_H-paniculata_contig2590.7063.1 vs. uniprot
Match: A9UQR0_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UQR0_MONBE)

HSP 1 Score: 90.9 bits (224), Expect = 6.090e-15
Identity = 68/189 (35.98%), Postives = 87/189 (46.03%), Query Frame = 3 
Query:  693 DAHPEMVEAVFTLMREWINELPVPSLRWLEAWLDLAVS---GMT----VRHRGPARAVLNLIQACCAQRSDPTFTTAFSALLRDTRLGLA-ITRGLLSGLCGAMPSWMLDDLVATIRALFDTVNPASVSVWVEAVLQDSTFERYGVSDEGKIAFVRKLKEDLCCKDWRAFKAGLKAFCGGKKKGTGGTP 1235
            DA P+ VEA+F L +      P   L   E  +DL +    G T    ++HR    A L  ++AC A RS     + F   L      +A I   LLS LC   PS ML+D VAT R L    +   V  WV   +    F RY VS   K  F +++ + L        K  +K FCGGKKKGT GTP
Sbjct:  806 DAGPDTVEALFCLFQTVARTHPQYLLHQPELAIDLLIHHFLGPTFTAVLQHRPVISAALGYVEACAA-RSPEGSPSIFDVALEHRPTAIAEIVATLLSALCLIFPSHMLEDTVATFRRLMQPYSLERVGEWVAWAINQPAFPRYSVSATAKQIFAQEVVQALQQPASSRLKGTIKQFCGGKKKGTSGTP 993
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2590.7063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD87_9PHAE4.420e-8974.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA3_ECTSI1.340e-5540.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A9UQR0_MONBE6.090e-1535.98Uncharacterized protein n=1 Tax=Monosiga brevicoll... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2590contigH-paniculata_contig2590:8710..20318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue6.8e-07
Seed eggNOG ortholog554065.XP_005850953.1
Hectar predicted targeting categoryother localisation
EggNOG OGs291IV@1,2R8ET@2759,34MAW@3041,380RZ@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons8
Model size2513
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2590.7063.1prot_H-paniculata_contig2590.7063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2590 11226..19244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.0173361-UTR-H-paniculata_contig2590:8709..87951622929771.0173361-UTR-H-paniculata_contig2590:8709..8795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 8710..8795 +
1691481003.9419417-UTR-H-paniculata_contig2590:8709..87951691481003.9419417-UTR-H-paniculata_contig2590:8709..8795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 8710..8795 +
1622929771.035188-UTR-H-paniculata_contig2590:10027..104641622929771.035188-UTR-H-paniculata_contig2590:10027..10464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 10028..10464 +
1691481003.9515688-UTR-H-paniculata_contig2590:10027..104641691481003.9515688-UTR-H-paniculata_contig2590:10027..10464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 10028..10464 +
1622929771.071352-UTR-H-paniculata_contig2590:11170..112251622929771.071352-UTR-H-paniculata_contig2590:11170..11225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 11171..11225 +
1691481003.959377-UTR-H-paniculata_contig2590:11170..112251691481003.959377-UTR-H-paniculata_contig2590:11170..11225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 11171..11225 +
1622929771.2229712-UTR-H-paniculata_contig2590:19244..203181622929771.2229712-UTR-H-paniculata_contig2590:19244..20318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 19245..20318 +
1691481004.0181432-UTR-H-paniculata_contig2590:19244..203181691481004.0181432-UTR-H-paniculata_contig2590:19244..20318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2590 19245..20318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.0916173-CDS-H-paniculata_contig2590:11225..113281622929771.0916173-CDS-H-paniculata_contig2590:11225..11328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 11226..11328 +
1691481003.967429-CDS-H-paniculata_contig2590:11225..113281691481003.967429-CDS-H-paniculata_contig2590:11225..11328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 11226..11328 +
1622929771.113361-CDS-H-paniculata_contig2590:11371..114621622929771.113361-CDS-H-paniculata_contig2590:11371..11462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 11372..11462 +
1691481003.9753983-CDS-H-paniculata_contig2590:11371..114621691481003.9753983-CDS-H-paniculata_contig2590:11371..11462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 11372..11462 +
1622929771.1342125-CDS-H-paniculata_contig2590:12564..126881622929771.1342125-CDS-H-paniculata_contig2590:12564..12688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 12565..12688 +
1691481003.9833047-CDS-H-paniculata_contig2590:12564..126881691481003.9833047-CDS-H-paniculata_contig2590:12564..12688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 12565..12688 +
1622929771.1529994-CDS-H-paniculata_contig2590:14324..145241622929771.1529994-CDS-H-paniculata_contig2590:14324..14524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 14325..14524 +
1691481003.993491-CDS-H-paniculata_contig2590:14324..145241691481003.993491-CDS-H-paniculata_contig2590:14324..14524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 14325..14524 +
1622929771.1710694-CDS-H-paniculata_contig2590:18620..188191622929771.1710694-CDS-H-paniculata_contig2590:18620..18819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 18621..18819 +
1691481004.002068-CDS-H-paniculata_contig2590:18620..188191691481004.002068-CDS-H-paniculata_contig2590:18620..18819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 18621..18819 +
1622929771.1957061-CDS-H-paniculata_contig2590:19100..192441622929771.1957061-CDS-H-paniculata_contig2590:19100..19244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 19101..19244 +
1691481004.0102909-CDS-H-paniculata_contig2590:19100..192441691481004.0102909-CDS-H-paniculata_contig2590:19100..19244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2590 19101..19244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2590.7063.1

>prot_H-paniculata_contig2590.7063.1 ID=prot_H-paniculata_contig2590.7063.1|Name=mRNA_H-paniculata_contig2590.7063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MPLFGGNRSRGGGCSRKRGGGRSSRGKVRGCCRCRGGPDAHPEMVEAVFT
LMREWINELPVPSLRWLEAWLDLAVSGMTVRHRGPARAVLNLIQACCAQR
SDPTFTTAFSALLRDTRLGLAITRGLLSGLCGAMPSWMLDDLVATIRALF
DTVNPASVSVWVEAVLQDSTFERYGVSDEGKIAFVRKLKEDLCCKDWRAF
KAGLKAFCGGKKKGTGGTPPVHAAHANRQQQQQQQVLLQQQAQQPAQADQ
PAVRHSGEFRDAGGVVAMGNDDPETTSPFMLRSMTM*
back to top

mRNA from alignment at H-paniculata_contig2590:8710..20318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2590.7063.1 ID=mRNA_H-paniculata_contig2590.7063.1|Name=mRNA_H-paniculata_contig2590.7063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11609bp|location=Sequence derived from alignment at H-paniculata_contig2590:8710..20318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGCGGGGACTGCTCGTGGACATGGTGGAGGCATTCGGGGAGGGGGAG
GAGAAAGTGTTGTCGGGCATCTGCCAAGTGTTCGAGGTGTGTTGTGTTTG
TCATGATGTTTCTCGATCGCCTGGACCACTAGGCAGATGCCTCGCAAAAC
GGTTTTGTAGGTTAGTGTTGTGTTGGTTGGTGATTGCCGTCATATTTTTT
TGGTTCGTCATATTAGGGTATATCCTACGTTGGATACATTCGTGTTTGTG
CGTGCGTGTGTATGTGGCATCGTCACCCTGAGAATACGAACAAAAGCAAA
TTATCGTAAAATACTCAAGTATGGAAGCATCGGATAAAGGTTTTAGCCTC
AGCCTTCCGGGGGTTAAAAAAAAAAAACATCATTCGCAGTCGTGTATGTT
GGGTAATGGTTGTCTCTTCCTCTCTGTCCAGGCGTTTTGGACGATAAGAT
AGATTCGTCACCTTCTTTTTGCTTATTGGTGGCCGTGTTGTATCGTTTTC
GTTTGGTGTGTTTTTCGCTTTAGCCGTTCAGCAGTATTGCAATTAGTGAG
CATGCTTCCAACTTGGATTGCCGGTTGGTACTACGTTTTGTGTGGGTACT
TTCACATGTTTGACACCGATTTCCCGTGTTGATGATGCTGGCCTGTTCGT
CAACATGTCGTTGGCAATAGGCACACTGTATGTGTTATTAAGGCTCTCAT
GGCTAGTTGATGTTTTATATTCCCACCCCGTCTCAAGCACGGTACAGAGG
GTGTTCAGGTTTATGAAAGGGTAATGAAAAGTTGAAAACCCTCTCTTGAA
TCTTGATCCTCTATTGTTCATGATCGTAGATTGAACTGGAAAAAGCCTGT
GTGCATATTGTGTTGAAAGGAGAATATTCCGTGGTCGTTTGCTCGAGTCG
GCTCGATTGAAACCCAGGTGGTGTACAGTGGATGATGTACAACGTTGGTC
ATTTCCATATCCGTGCTCGTTTTAAGAGAGGTTTGGCCTGCGGAGCCCAA
AATTTGTCTTGAAATCTGAATAAAAAGTGTTGACACGGCAATTTAACCTC
TCGCTCAAGTCCTGAATTCTCGCAAATAGACGATTCTTAACCCTGTCCAT
GCCCTGTATTTGATTTTCTCGCAAGCTGCAACATGTTCAACATATCAATT
TTCTGCAGATTCAGTCTTGAAGACTCTCCCACCGATCGAAAACTGTATAT
ACTTGACGCCCTCCCGCTCGCCGTTACGCTGCATGACGACGCCTTCAAGT
ACAAATGTGAAAACCCCGTCTCCTTCGTGTGCAAGTATAATAATCCGCTA
TCTCTTGTTCCTCCACAGGCTCTGGTATGGGCAATAGCAGAGCGACTGCG
GCAAATAGAAGTACGACATAGTAGTCACGACTTCGCTGGTGCTCCACCAT
CGTCAGTGCCAGCCTCCAATGGTGATGCCGACGTTGCTATTCTTGGAGTC
GGGAGTGGTGGCGGGGAATTGCGGGGTAATAACGCCGAGAGTTTGAAACT
CGCGGTAGCGCTAGGAGACGCTCTCGCCCAGTCGTTCTTGAGACGACCAT
CCGTGAGGTTCTTGGAGACGCTGCGGTGTATCACCAAGGAGCTTGCAACG
TTCGACAGGTGCGGAATTGCTGGGAAATAAGTTTTGCGGGGTTGTCAATG
GATATGCGGGTGGGTCTTCGGTGTGTACGTGCGGTCCCAGCGTTTGGTAC
TTTCGAAGGTGGGTGGATGGGTGGAGCGACCATGATCGTTTTTATTTTCA
TGCGGGTCCCGTATGCATGATAGGAGTTGGTCGCCGCTATTTTGATTTTG
GCCGCTTGCGACTTGGTGTCAGGAAGGCAGGGGAGGTCAGCCCCCCCAGC
GTTTTTCACGCGATGTTGGTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCT
TGGCTTGGCTTTAACCCGTAGATCCAAGGTCGCCAACAATCCGTCTAGAC
TCTTGAAAGCTACAAGTTAGTCATTGAGCGCAGTGTTGGACATTTATGAG
GACGTAGTACTTCTCGACGTGCGTAATTATTACTGCCCGTAGCTCACCCA
TTCAACGTGGAAAACAAGAAAGGTCCAGCATATCCTCGTCCATTTGTTAA
CTTGGTTTACAAAATAGTCTTGTGAACAAAAAACAGTTTACACTCACATG
GAGCCAAATGTTGAAACTACGCCCATCGTATCCGTCACAAGACCTCCCCA
AGTGCACGTACAACAGTATACGGTACAAGAAAATCCTTTCTTGGCAGGTA
CTTGATTTTTTGGCCGGCAAACAGCGGCGAAAAGCATTCCTCTAAACGTG
AAGGCGTGTGGACGAAATAGTTGACTTTATTCCTCCTTAAAATTTGCATT
TTACCCCTTTTACACCTGATACCTACACCCACAACCGTGGTAGGCATTCG
CCTGAAGCAGGAGCAGGAGCAGGAGGAGGAGGAGGTGGTGAGAGCGGGGG
ATTCGCCGAAGCCCCCATCTTCGCCGACCCAAACTTTAGCTTGCGAGCGT
GCGACTGGGTGAACCAATGCCTCTATTCGGCGGCAACAGGAGCCGCGGCG
GCGGCTGCAGCCGTAAACGCGGCGGTGGCCGGAGCAGTAGGGGCAAAGTC
AGAGGTTGTTGTCGTTGTCGCGGGAGGAGGAGGGTGGGGAGGAGCAGGGG
CCGCGCGCGGAGGGGGAGGACCGGACGCACACCCGGAAATGGTGGAGGCC
GTGTTCACGCTTATGCGGGAATGGATCAACGAGCTGCCTGTGCCATCGCT
AAGGTGCGCGCGTGTGTGCGTGCTTGTATCTCTCTATATATATCCGGATG
GGAAGGTATGTAACTAATGTTATTTGATCACTCTAGAAGCCCCGTCTAGG
ATGTCGATGCATCACAAAAAATAAACCCTTGACCTCTAACATTTTTTCTT
GTGTTTTTTCAGCATAGGTATATTGGCAATATCGTAGCGCAACGTGCGCA
ATAAGGTTCGCCTATCAGCGCGACAGACGTAGAGTGCCTTGTGGCTATCA
CAGGAGCCGTCCAGTGCTTTCGAAGTATTGTCGTGTGTTTGGCGGTGCTC
AATATGGTGTCTGTACGGGCGGCTGCTTTCTTATATTTTATTGTCCCTAG
AACTGAGTTTCATCTAGTTTATTGTCGCCGCCTGGATAACGCACTCGAAA
ATAGTTCGTACAGGAGGTGGTTATTTGCTGCATACCACACGATTTTGTCC
AACTTTCCTCCCACAAGATCAAGTGCGTGGGACATAATAAGTGTAATTAC
ACCGCACGTGGGGAGATGCAGCACAGGTAACGGTTATTTGCTTTTGACAA
ACGGGGAGTGCAAGTGTAACACGTGCGTGTATGAATGGTAGTTTTCTTAT
CAATAACCCTCTATAGTTAAAACCCAAGAAATCCACAGAACAATCAAGCC
GTCAAAAGGTGCAGGTGTTCTTTTTGACTCTTGTATTTAGTTCGCCGCGA
TTGGTCATGGTCATGTTCTACTTGCAGGTTATTTTTCACACCTAAACACG
TTTTATTGGCAAAGCGGTTTCTGAAATAACACATCAAATAAAACTTGTAC
AAATAACTATCGCAAAAATCATCTTGTATTTCGTGGATGTGTAGTTTATT
TTAAGGCCCTGGTGATTTCTTCTTAGTGTTTTACAAGAGTTCGTGTTGTG
GTGGTAAGTCGGTGAGCTACGAACCGTCGCCGCAAGATGTGTTATGCAGA
CCCCCACTATGTATATATGTATGATGTATGTATGTATGCATATATTGAGC
TCAGATTGTGCAGCTTGTATCTGAAAGCTGGGCATACATACTTATTTTCT
ATTTCCTAAAGTTAATTACAGTACCTGGTGACTCCTTGTACATGCTCGGT
TTCAGGTGGCTAGAAGCGTGGCTGGATCTGGCTGTTTCGGGGATGACGGT
TCGGCACCGCGGCCCGGCTCGCGCGGTCCTCAACTTGATACAGGCCTGCT
GTGCGCAGAGGAGTGACCCAACGTTCACGGTGACTGGTGTCGAGGTTTTG
CATAAGTTTGGGAGGGGGAATTGCCTGAACGGTAGATTATTGGAATTTTG
TTTTGCAGCGCCTGGAAAAAGTTGATGCCCTTCTGTGCAAAAGCGAAAGA
TCAATCAATGTGTAGGAGGTTACTTCTCGTGTTTGTATAATGTCACCAAT
TTCAGAGACAGGGGGAGAGAGCGGAGGTGGGGGGGAAACGAAACAAACAT
GGACACTCTTGAATTCTTGACTGTACTTCGCAGTTTGTTTGTTTTCGCTC
TCGCACTCGAAAGTGATGCTTGGACACTGACCTCAACTGTAGTTTCCACG
ATGGCACATCAGCATGGATCAGTATGGATGGATTGAGCGTTGAAGAAAGC
TAAATAGGTAGTCTCTTTTGCTTTTATCGGTTCGGAAGACGAAAACAGCA
TGTCCTAATTATGCGTTTTTTCCTCGCGCGACCCGGTCGCTCACATGAGT
TGAACCAATTGTATTTTTTTGTATTTTTGTTATTCTCAAACAGTTTGATT
TTCGACAGGGAATGAATGAATCCCATGCCAACACTGGTATCGACGCTTTT
CTTCTACACGGAAGAGTTGAATACTTCTCGGCAAAGATTTTAGAAACGTC
AAAATTGCAGCTCTTCGAGTATATTGTGGCGAACCTCGAATGGTTTTTGT
TGTGGGGAGTTCACGAATCTGTTATCGTGAAGTTGAACGTGGGTTTTCGC
TGCAGACAACGCGCTGAGCAGCTCCGGGGAACTCCCCGTACTGTATAAGT
CATCCGATTTGGACCATGGACAATTGCCTCCATTTGCATAAGTAAATCAA
TCATACGTGTGGCTGGGCCACGCACTTCTGTTCCGACACTCTTCTGTTCC
GACACTGATGAAATGTGGAAACTCTTTGGGTTCCGGTGTTTTTTTTTCGG
TCTCTGCAAATATTGTCATATTTATTGTAACGTAACTTCAGCACACATTG
AAATTCGATGCGACCAATCCAAAATCACCCGATAAGCCGTGAGATGGATA
CTGCAGGACGCGATAAAAGTCGAGGGGCAGGCAATGGTCTCGTGTCGCCC
GTGGACGACCCAGCGACGGCGCACTCTGCATCTCGACGCCCACAGACATT
ATTCGCAATCAGTATTTGCGTCAGTCATACCGACGGTTCTGCATGTTTCT
ATAGAGGTACAGAAAATAATTTCCATATGCTTTTTTAGTGTTGCCCTCGG
AAACACCAGAAATTCTCAATGTGTTCAATTCGAGAAGAAACGTGCACAAT
TTGGTGTTTTTTGGCCGAGTGCTTTTTTTCACGAGTAGTGTTTGGTCTTG
AAAGTCACAGCTACTTGACTCAATAATTTGGGTTCAACTCCAAAAACACG
TAGGATTCTAATTATTACCACTAAATCTTAAATCGGAGATACCTCAAGTG
TGTCTCTAAGTCAACTGTTTGAACCAAAATTTTGACTGAAAAAACATGTA
GAATTCCGTTGAAACATTTTTGGCCGAAAATCAGAGATTTTACTGATTGT
ACTTGTGAGACAGAGGAAGTACAATTGCAAATTAAAGTCAGTTACATAAC
CTCAACACTCCCCTCCCATCCCTCTCGAAACGAACTCGCTGTCTTGTGCT
TGTGCCCAACAAAAGACGGCTTTCTCAGCTTTGCTACGGGACACGAGGCT
GGGCCTTGCCATCACCCGAGGCCTGCTCTCGGGGTTGTGTGGGGCTATGC
CTTCCTGGATGCTTGACGATCTCGTGGCGACTATCCGAGCGCTGTTTGAT
ACTGTAAACCCGGCCTCCGTGTCGGTTTGGGTGGAAGCGGTCCTGCAAGA
TTCAACTTTCGAGAGGTAAAACTAAACTGAGAAGTGCTGTACCTGGTTAA
TCAACACACGAATTTTGAAACTGTTAGTGGGCCTGTGGCCTTAGATCTCC
TTGCCAGTTGTAGGCAGGCCAGCAGCAATAGACTCCATCGTGACGGCCAC
TATCATTCCCTTTGTGTATTGAGCTCAAGTACCACCCTGGTTGGTTATGG
GTACTTACAAACGTTTTGCAACTATGAGCTTGGGGAGAATTTCAACAGGA
AGTGCATCTTCGTATGAGCGCAGCGAACGATTGTGTCGTGGGTTGTGGGT
TTAGACTCGTTGGGGGAGAGAAGAAACTATTCAGTGCATGGGCATGGCTG
TAGCTCTACTACTACACTGTTGGTGGGCCTCCCTAATGAGCGACGGACCA
AATAGGTGGTGCTTGTTTTCAAACCACTCTAATGTGTTGAGTGTTGAAAA
TACAATTCACTATTTGAACATGTTCTAAACAAAAGTGCTGCCCGCTGCTT
GAGCCCGCTTGCATTAGGAACGCACAAAAAATGGCTCGAGAAACAGAACG
ATCAGCAAGCTCCTAATCTGTTCTTTCCCTGATCCTGAGAAATTCCACCT
GTTCGCGAGTGTTGGGGTCGGAGTTAGGGTACAAGTGTCGTATTCCATTG
ACTGTCCTGGCGTGCGATCTCGCAACTTGCGTGATCGCTGACTAAAATCC
CTATTCGTTGATACATCTTATATTTGTACCACTCTGCATCGTTCTGATGA
AATACCCATTTGCGTGTGAGGTGCCGAATATGTATCTCAATCGGCAACCG
CACTTGTACGATCAAATCTCAAATATGGCTGTGCTCTGTATAAAAGTCGA
CGTGGAAATTTCGTCGGAAAAGTCGAAACTTTCGTTCGTGTAGGGGTTTC
CACGAAACCGTTTCTAGGAACATTTTGTTTTTGAATTTTCGCAAAAATGA
TTATTTTCTGAACTCCGGTTTGGGTTTTTCGTGGTCGCAGTCACAGTCAA
TAGCTGTCAAGATTCGTACACAAGAAGTTGACCTGATTCTTCACCCAGGT
CGTTAACTATTGTTCTTGGATCAATTACGTGTCATGTATATCATCGTGAC
CATCCAGTTCGAGTTCAATCGAGAAACCAACACTTAGGAACAACTACATG
AAGCAATGGACGGATCCATCGACAAATGCTGCCATATCCGCACAATTACG
CACGCGATTTGGCACGTAGGGACAAAAAACAATACTCATGACGTGCCACT
TGCTCATGAGCGATCCGATTAGAATTTCGAAAGAATTTTCATCTTGTGGG
TGCAAAGTCATGGGTCACCTACAGATCAGAAATCCCCCCAAATCGGCTGA
TGTGGCAGCTATTTGTCCCCATTATATGATGAGAAGACCTTACACCTGGA
AGAAAACTGTCAGGAAAAATCTCTTTTCCAGGCACCTCAACTTCTAACTA
CCGATCACGTTCTTAATCATTTTGCCATGTTCCAACTGCCGTGATTTGTG
GTAAGTCGCCTGTCGCTCTGCCTGTTGGAACCATGACGTATAACAGGCGA
TCGCTTTCTACAGAACTCTCAGCATACTGATGTCTGTCTGCCAGCAATGT
CTTTCCCTGTGTTTTCACTGCGTTACCGCAAATACGGTTTTACATGGAGT
GATACACCAACTCTACTGCATTTAATACTTCCTTTTTATTCCGTCGCAGT
GCGTTCGACGGGACCAATGTGTGTACTGCAGTCTGTCAGTTGTACAACCT
CCACATGAAGCACCTGGCGTTACTGCTGCAGGAACCGACCCCGATGTACA
TGAATAACTTGAAAAAAGTGGATGACCCTTTCGCACCTAGTTTGCGCAAT
TTGATATTCAAATTTATGTTTGTCTAAAACACGTGGTAATCTCGCCTCTT
TATGTTTGGAATGTTGTCGACATAAAGATCTGATCTCACCTCCGGCCAAA
ACAATCGTGTTCCTCGCCACTCGGTACCTCCGCCCCCCCCCTCCTCCATG
TTGGGACACGGGACTATCAGATATGACGGATCGCAATTAGTCTCGGTGTC
GGTATCCGGATGTAACGGTGTTAAGGGAGCTTGTTTGGCGTATTTACACA
AAAGCGGGACGTGATATCATGCCTCGACTATCTTGTAATTCTCATACTCT
TAAATGCGCTCTTAGCTGCAGCCTTACACATGGACAAGTGCATCGTGCCG
GCTTCATAGGCGTGTCTAAATCATCGAACATATGCGATAAGCCAAAGTGG
ATAACGTCAGAGACTCACGAGCAGACGGGCAGGCATCAAGATGGGGGCTG
GCTGCACTCTTTTCTATATCTTGGTTCTTGCTCTGAACGGCATTGCTGGG
ACGAACGGATGAATGTGGAACACAATCAGCTCACTGTAGGCAACCAGATG
ATTCTTGAGTTTTGACTTGGAAACTTGTGTGTCCGAGCAGTTGCAGCACC
GTCCGATTGTCATTGACTGTGTTATCGTCTCAAGGTCAAACGTTACCATC
GCAAGAACCACAAGAAAACGAGCTGATAATGTACTTCGAAGGCTGATACC
TCACCTCGTTATATCCAGCAATTATCCAAAGGTCGTCACAGTACAGTATG
TAAACTGGATACTGGGAGTGTACTGGTGGTATCCAGTACCAGAGTACGTA
ATCACTACCAATTGGGACCCTGATCGAAAATACTGCGTAATCTCAATTAT
CAACAGATATTATCGCTTTCCAAAAATACTGGATACATCTCCAGTTCTTG
CTCGCAAAATACAGGGATGACAAAGTTTGTCCAGTGCAAAGCCCTCATAT
CCTTCGTGTATCTCCAGTATCACTAGTACAACTCTCGAAAGTACCCAGTA
TTTGTCTAGTGTTTTCTGGCAGAATACTGGATGACTTAGTAGTTCAGTAT
CACTTAGAAATATACGAGCTATATGCCAGTACTACGATTATCTATCGTCT
CAAACATGGATATTTATAGTGCGAAATATTTTATTGACTCGGTAGTTACG
AATCATACAAATGTGGATGATTTGTAGACTGCGGACATGGGTTTTGCTGT
TTCGAGGGTGTAAATACTGGTTACTGTGGTGGCCATATTGGGAACGCAAA
AAATAGGGTAACAAGCAGCCAACGTCCGTCGAGGACAGTTACCCTGATCT
TCACATTGACGATACCAGTAGAAAACATGTCTGCTTCTTGTTCTGAAGGT
CATGAGTTTGAACCCCAGGATTGACGCACCACAGAAAAAAGTAAAACTCT
GGAATAAGTCTCAACTAGGTGGGAAGACGAAAGGGAAGATCAAAAGCCAC
GCGGAGAAAGAAAGTGAAACATCTCTCTGCGAGACGGCTGAGATGCAGTT
GTCCCTAGGCTGAGGTGATCCAAAGGACGACTCGAAGAAGGGGGTAGGTA
ATGTGGTGATCGCCTGAGGAACAATTCAAGGGTTGTAATACCCAACCTCC
GTCGAGGACAGTTTCCCTCATTTTCACGTCACTGCCAGTTTCCCTTACAT
TCAGTACTCAAGTACGTACTGGGTACCATTCCGGGCCACGTGATATACTG
CGTAGATACCAGTATCACCAGTATCTACCTTTAAATGTACTGACTACATC
TCTAGTGCTTGACGACAAGATAGTGGGATGGCTCAGGTTTGCCAGCATGG
ACTTCGGAAGTACAGAGTACATCTCCAGTATCACCAGTGGAACTCCAAAA
ACACTGAGTATTTCCCATGACCCTAGTAATATTTCCAAAATGACTCAAAA
CATCTTCAGGACCACAAGTTTTTACTTCCAAAATACCACTTCTGGTACTG
TACCGTATGTAGTGACCTTTGCATTAATCATCTCCTCAACTTGCCCCTTG
AGGATTGCCAAGAACTTTACTTCGGCGCAAAAATCGGTAAGATCCATGGA
GATGGAGCCGAGGCAGTTTGACCAGCCTGGCATAGATTTCCCTTCGTACG
TGTAAGCTTTTTTTTGGAATTCCACGATTTTAACAGTCCTCTATTTGACA
ATCCCTGTTCGTCAATTGCGTCACATGATTGCCCTGACGATCTCACTCTC
TCTTTCCCTTTCTCCCTTTCCCTCTTGCTGTCGATCTTAAAAAAACATGA
CGAAACGTAAGGTATGGCGTGAGTGACGAGGGAAAGATAGCGTTCGTTCG
AAAGCTGAAGGAAGACTTGTGCTGCAAAGACTGGCGAGCGTTCAAGGCTG
GACTGAAGGCGTTTTGCGGCGGCAAGAAAAAGGGGACAGGGGGCACTCCT
CCAGTGCACGCTGCCCACGCGAATAGGCAACAGCAGCAACAGCAGCAGGT
GCTGCTGCAGGTACAGTTCGGAAGCGGGGCGAAGGAAAATTATTCGGTTC
ATTACTCTTGTGTCGTGGATTCACAGGCGATAGCACTTTTCGTGGCACAC
GCATAAACTGTATTTTGTTGCGTTGCCCAAGATGGGCAGATGATTTTGCG
ATGAATTCATGTGGAATTGGCCTAGTCCTGCGTCAGCTTTTAATTCGTAT
TTCTTGTTTTTTGGCCACGAATTGTGTAACCAACACTCGCCTCGAATTTT
TTTCATCGCGGACGCTTGTTCGTTTTTGCGTGTGCGTGTAGCAACAGGCG
CAACAACCTGCACAAGCTGACCAACCAGCGGTGCGGCATTCTGGCGAGTT
CAGAGACGCGGGAGGCGTTGTTGCCATGGGAAACGATGATCCCGAAACAA
CATCCCCGTTCATGCTTCGGTCGATGACGATGTAGAGTCTGGCGAACAAC
GTTCGTTTGCGTCAGTGTGAATGTACATCGTGTAAAATGCTGACAGAACG
CCCTATGAGATTTTCCAAACGTGACTTTCTTAAGTAGTATGGCTGCGCAC
TGTCCAAAGAGCCCGTCTACCATGTTGGCCGATGGTCGAGGATAAGGATA
TAACGACACCACTTTATATCGCACCAGAGCTGTCGTTTTCGAGAGAATCG
AGGTTGACTGAATGACGTTTTCATTACTCATTATCCGGGGTATTAGTCCT
CTAGGCTAGGTGGTTAACGATATTATGTCCGTTGGCGTTTATATTAGGTA
TTGAGTGGGAAGGCTTATGTGGCGGCGTTGCCCCTCTTGACGCCAAAATA
AAATCTGGTGTGCTTGATGTGAGTTTTGTTTCTGTACATGTACAGTGCCA
AATGAAAGTAGGCAAGTAGGCAAATGAGTGTTTGGGTGGCAGCGTATCTG
CCGCGTGCGGTGTGGTACCGCTCCCGCTCAATCGATTTATTTAGTGGGCG
CAACGTTTGATTTTGTCACACAACTTGCTTTTGTATACGAGTCCAAAACA
AGGCATATTCTACTTTATAGATGGACACGTATTTAAGTTTGCTCGCGACG
CTTCATTTCGTGAATTTACGCATATAGAGAAAGGTGTGTTCGCAATTTTT
GTCGTTGGTCGTAGAGAAGGGGTCACTGCTGCAGCCCCTATTCGTCGTGA
ACCCCCGTGCACTCTTAGCAAGCCTATGGGGGGCTACGGGGGATGTGTTG
CTCGTGATTTGAATGAAACGGGCTACAAAAATCATCTTCGGAAAAGATGA
ACGTTGTGAATTTACTCCGAATGCTACAAGCCCCCCCCCCCCCTCCTCAA
TTCAACGCCAATCCACTCTGGTGTGTTGTGTGATTTGATAGAAGGGAGAG
GTGGAGAAATAAATGGATATGTGATGACTGGGCAAGCACTGTGACACGAG
GATGGTTCGTCAAGTACGGCGAGCTGTCCAAGGGTAGACTCTATTTCCTG
TCAATAGGGAGGTGTCGACAAACACCAGTTTTCAAGTGATAGGTTGAGTC
CGAGGGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2590:8710..20318+

>mRNA_H-paniculata_contig2590.7063.1 ID=mRNA_H-paniculata_contig2590.7063.1|Name=mRNA_H-paniculata_contig2590.7063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig2590:8710..20318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCTATTCGGCGGCAACAGGAGCCGCGGCGGCGGCTGCAGCCGTAA
ACGCGGCGGTGGCCGGAGCAGTAGGGGCAAAGTCAGAGGTTGTTGTCGTT
GTCATGCCTCTATTCGGCGGCAACAGGAGCCGCGGCGGCGGCTGCAGCCG
TAAACGCGGCGGTGGCCGGAGCAGTAGGGGCAAAGTCAGAGGTTGTTGTC
GTTGTCGGGGAGGACCGGACGCACACCCGGAAATGGTGGAGGCCGTGTTC
ACGCTTATGCGGGAATGGATCAACGAGCTGCCTGTGCCATCGCTAAGGGG
GAGGACCGGACGCACACCCGGAAATGGTGGAGGCCGTGTTCACGCTTATG
CGGGAATGGATCAACGAGCTGCCTGTGCCATCGCTAAGGTGGCTAGAAGC
GTGGCTGGATCTGGCTGTTTCGGGGATGACGGTTCGGCACCGCGGCCCGG
CTCGCGCGGTCCTCAACTTGATACAGGCCTGCTGTGCGCAGAGGAGTGAC
CCAACGTTCACGGTGGCTAGAAGCGTGGCTGGATCTGGCTGTTTCGGGGA
TGACGGTTCGGCACCGCGGCCCGGCTCGCGCGGTCCTCAACTTGATACAG
GCCTGCTGTGCGCAGAGGAGTGACCCAACGTTCACGACGGCTTTCTCAGC
TTTGCTACGGGACACGAGGCTGGGCCTTGCCATCACCCGAGGCCTGCTCT
CGGGGTTGTGTGGGGCTATGCCTTCCTGGATGCTTGACGATCTCGTGGCG
ACTATCCGAGCGCTGTTTGATACTGTAAACCCGGCCTCCGTGTCGGTTTG
GGTGGAAGCGGTCCTGCAAGATTCAACTTTCGAGAGACGGCTTTCTCAGC
TTTGCTACGGGACACGAGGCTGGGCCTTGCCATCACCCGAGGCCTGCTCT
CGGGGTTGTGTGGGGCTATGCCTTCCTGGATGCTTGACGATCTCGTGGCG
ACTATCCGAGCGCTGTTTGATACTGTAAACCCGGCCTCCGTGTCGGTTTG
GGTGGAAGCGGTCCTGCAAGATTCAACTTTCGAGAGGTATGGCGTGAGTG
ACGAGGGAAAGATAGCGTTCGTTCGAAAGCTGAAGGAAGACTTGTGCTGC
AAAGACTGGCGAGCGTTCAAGGCTGGACTGAAGGCGTTTTGCGGCGGCAA
GAAAAAGGGGACAGGGGGCACTCCTCCAGTGCACGCTGCCCACGCGAATA
GGCAACAGCAGCAACAGCAGCAGGTGCTGCTGCAGGTATGGCGTGAGTGA
CGAGGGAAAGATAGCGTTCGTTCGAAAGCTGAAGGAAGACTTGTGCTGCA
AAGACTGGCGAGCGTTCAAGGCTGGACTGAAGGCGTTTTGCGGCGGCAAG
AAAAAGGGGACAGGGGGCACTCCTCCAGTGCACGCTGCCCACGCGAATAG
GCAACAGCAGCAACAGCAGCAGGTGCTGCTGCAGCAACAGGCGCAACAAC
CTGCACAAGCTGACCAACCAGCGGTGCGGCATTCTGGCGAGTTCAGAGAC
GCGGGAGGCGTTGTTGCCATGGGAAACGATGATCCCGAAACAACATCCCC
GTTCATGCTTCGGTCGATGACGATGTAGCAACAGGCGCAACAACCTGCAC
AAGCTGACCAACCAGCGGTGCGGCATTCTGGCGAGTTCAGAGACGCGGGA
GGCGTTGTTGCCATGGGAAACGATGATCCCGAAACAACATCCCCGTTCAT
GCTTCGGTCGATGACGATGTAG
back to top