mRNA_H-paniculata_contig11086.706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11086.706.1
Unique NamemRNA_H-paniculata_contig11086.706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A6H5K9A7_9PHAE (Protein N-terminal glutamine amidohydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A7_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 8.970e-73
Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 1 
Query:  568 RTDCV-YTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFVAQPSQRFS 1146
            R DC  YTSHYCEEN L L   +   A  AG  L VVFVSN ARQVPVW Q LAD  ++PVLWDYHV+LLAQHPHGNW+YDLDSTL FP+PAS YM  AF    ++D +Y Q+FRVVPA EC +HF+S+RSHM  + G YSA PP  PPLRG +A+S +NM EWI+M+++TGRGRVL+L +ME FVA+   RF+
Sbjct:   43 RADCRWYTSHYCEENSLRLCNHLLGRAESAGVQLSVVFVSNAARQVPVWFQRLADRRDEPVLWDYHVILLAQHPHGNWVYDLDSTLDFPSPASLYMTQAFRKLMNIDQQYRQMFRVVPARECVDHFSSDRSHMMEEGGGYSALPPGFPPLRGPRATSSNNMNEWINMDATTGRGRVLNLEEMETFVARGPHRFT 236
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A7R9B0N2_TIMSH (Protein N-terminal glutamine amidohydrolase n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9B0N2_TIMSH)

HSP 1 Score: 148 bits (373), Expect = 1.360e-36
Identity = 80/200 (40.00%), Postives = 114/200 (57.00%), Query Frame = 1 
Query:  562 PNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKA---------SSDHNMEEWISMNSSTGRGRVLSLLDM-EHFVAQP 1131
            P ++ CVYTS YCEE+V  L  D+ +         H+VFVSN  R VP+W Q  +   +KPV+WDYHVL L        +YDLDS LPFPT    Y+   F +   +  +Y + FRVVPA    +HFAS+R HM+   G +   PP++P +              SS+HN+EE++SM+ + G G+VL+L+ + + F  QP
Sbjct:   31 PQKSACVYTSCYCEESVWKLCEDVNKRHPTQLQHCHIVFVSNDQRTVPLWRQKASTEEDKPVIWDYHVLFLYNPDDRCLVYDLDSDLPFPTHFHKYVTETFRTDHILKPEYFRYFRVVPAPLFLQHFASDRRHMKRADGSWIHPPPNYPSISNPGEEIIGIFNLFSSNHNLEEFVSMDPTKGLGQVLNLIQLVKKFYQQP 230
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: UPI001FED5BB1 (protein N-terminal glutamine amidohydrolase isoform X1 n=3 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FED5BB1)

HSP 1 Score: 146 bits (368), Expect = 2.840e-36
Identity = 77/189 (40.74%), Postives = 118/189 (62.43%), Query Frame = 1 
Query:  568 RTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHG-NWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLD-MEHFVAQ 1128
            R DCVYTS YCEENV  L   +          +HVVF+SN  + +P+W Q  +   ++PV+WDYHV+LL  +P   +++YDLD+TLPFP P+  Y+R AF S  S+  ++ +  RV+PA+   + FAS+RSHM+   G +   PP +P +   +  S  N++++ISM++S G G V  L + ++HF A+
Sbjct:   17 RPDCVYTSCYCEENVWKLCEYIKAQEMCPLDQVHVVFISNENKTIPIWKQK-SSRGSEPVIWDYHVILLHMNPQAQSFVYDLDTTLPFPCPSDMYLREAFRSDDSIKPQFRRKMRVIPAVTYLKKFASDRSHMKHSNGTWRMPPPPYPCIETTE--SKMNLDDFISMDTSVGLGNVYKLPEFVQHFGAK 202
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A819ISL8_9BILA (Protein N-terminal glutamine amidohydrolase n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A819ISL8_9BILA)

HSP 1 Score: 144 bits (363), Expect = 1.020e-35
Identity = 77/189 (40.74%), Postives = 112/189 (59.26%), Query Frame = 1 
Query:  559 VPNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHM-RSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFV 1122
            V NR  CVYTS YCEEN+  L     Q       +L+ VF+SN  RQ+P+W Q  A +     +WDYHV+L+ +    + IYD DSTLPFP  A++Y++ A     ++ ++Y ++FRV+PA +  + FAS+RSHM +     Y A PP +PP+   K  S +N+ E+I M S  G G V++L D   F+
Sbjct:    5 VVNRDQCVYTSCYCEENIWKLCECWKQNNPNHLNSLYAVFISNKRRQIPIWEQKSASNSEHLAIWDYHVILVDKSSSPSVIYDFDSTLPFPVSATNYIQLAIRDEINIVHRYHRMFRVIPAQQYLDVFASDRSHMLKEDKITYIASPPSYPPICNQK--STNNINEFIDMESKNGPGIVMNLTDFRRFL 191
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A814ZE32_ADIRI (Protein N-terminal glutamine amidohydrolase n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814ZE32_ADIRI)

HSP 1 Score: 144 bits (362), Expect = 1.520e-35
Identity = 73/187 (39.04%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:  568 RTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHM-RSQWGEYSAKPPDHPPLRG-VKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFV 1122
            R  CVYT+ YCEEN+  L     Q  A   ATL+ VF+SN  RQ+P+W Q  +   ++  +WDYHV+L+ + P    IYD D+TLPFP   + Y++ A    +++  KY + FRV+PA +  + FAS+RSHM +     Y+A PP +PP+       S +N+ ++I M S    G V++L D   F+
Sbjct:    8 RDQCVYTACYCEENIWKLCESWKQNDANHLATLYAVFISNERRQIPLWEQKSSSRDDRLAIWDYHVILVDKSPSSTMIYDFDTTLPFPISVNDYLQLAIRDESNLLRKYHREFRVIPAQQYLDTFASDRSHMLKEDQVTYNAPPPTYPPISNETLIGSTNNINDFIDMKSINVPGTVMNLTDFRRFL 194
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A1B6JUJ8_9HEMI (Protein N-terminal glutamine amidohydrolase n=2 Tax=Homalodisca TaxID=139475 RepID=A0A1B6JUJ8_9HEMI)

HSP 1 Score: 144 bits (362), Expect = 3.730e-35
Identity = 69/200 (34.50%), Postives = 118/200 (59.00%), Query Frame = 1 
Query:  562 PNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFVAQPSQRFS*LQRC 1161
            P + DC+YT HYCEEN+  L + + + +       + VF+SN  + +P+W Q + ++ +  V+WDYHV+++  +   +W+YD D+ L FPTP S Y +  F S   +     + FRV+PA    + F+S+R HM+   G +   PP++PPLR  + S  HN+E++ISMN S+   +  ++ +++ F+    ++FS  Q C
Sbjct:   19 PKKEDCIYTPHYCEENIWMLAKKIQERSPEKLKFCYPVFISNEKKLIPLWRQTVGNNTDGLVVWDYHVIMVYYNEEASWVYDFDTQLKFPTPFSEYSKETFKSDDFVKTSLHRFFRVIPAESYLKFFSSDRRHMKRD-GLWMKPPPEYPPLRNSEES--HNLEQYISMNESSEVNKFGNVYNLKSFI----EKFSVKQPC 211
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A6P3VJN1_CLUHA (Protein N-terminal glutamine amidohydrolase n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VJN1_CLUHA)

HSP 1 Score: 143 bits (361), Expect = 4.400e-35
Identity = 76/187 (40.64%), Postives = 111/187 (59.36%), Query Frame = 1 
Query:  562 PNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLD-MEHF 1119
            P++ DCVYTS YCEEN+  L   +          ++ VF+SN  R VP+W Q  +   ++PV+WDYHV+LL      +++YDLD+TLPFP P S Y + AF S   +   Y +  RV+PA      FAS+RSHM+ + G +   PP +P L    A S  N++ +ISM++  G G+V SL + ++HF
Sbjct:   15 PSKEDCVYTSCYCEENIWKLCEYIKAQPQHCIQDVYAVFISNERRMVPLWKQK-SCRRDQPVVWDYHVILLHTGNRESYVYDLDTTLPFPCPLSLYEKEAFRSDHGLKESYWRKLRVIPAETFLSSFASDRSHMKDEVGHWRMLPPSYPCLE--TAESKMNLDSFISMDAQIGWGKVYSLAEFVQHF 198
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A8K0CC05_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CC05_9COLE)

HSP 1 Score: 143 bits (360), Expect = 5.200e-35
Identity = 76/193 (39.38%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:  562 PNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGN--WIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFVAQPS 1134
            P +T+C Y S YCEENV  L +D+           +VVF+SN +R VP+W Q      ++ V+WDYHV+ L  HP  +   +YDLDS LPFPT    Y+   F +   +   Y + FR++PA +    FAS+R HM+   G +   PP++P +  V A+S HN+EE+I M+SS G G+VL+L        +P+
Sbjct:   27 PKQTECSYVSCYCEENVYKLCQDVRTRYPAELQACYVVFISNPSRTVPLWRQRAGKDEDRLVIWDYHVIFLY-HPEPDRCLVYDLDSELPFPTYVHKYVTETFRTDHILKPDYFRYFRIIPASDFLRDFASDRRHMKRPDGTWIKPPPNYPAI--VSATSTHNLEEYIQMDSSKGPGQVLNLAQFVQRFYKPA 216
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BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A6P8HJZ9_ACTTE (Protein N-terminal glutamine amidohydrolase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HJZ9_ACTTE)

HSP 1 Score: 142 bits (357), Expect = 7.350e-35
Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:  577 CVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHGN-WIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVL 1095
            CVYTS YCEENV  L   + +  A       VVF+SNHAR +P+W Q  A     PV+WDYHV+L+ ++  G   +YDLDS LPFP P   +++ A  +   +   + + FRV+PAL   + FAS+RSHM+   GE+   PP +PP+R   A    N++++I M   TG G V+
Sbjct:   12 CVYTSCYCEENVWKLCERIREERANNINEYSVVFISNHARNIPIWMQKSAKDPLAPVVWDYHVILIWKNSSGTVLVYDLDSILPFPCPFDQFIQQAIQADKQLKKHFHRKFRVIPALXFLQTFASDRSHMKKANGEWIKDPPPYPPIR--TADCTMNLDDFIDMTPLTGEGTVM 183
[Close]
BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Match: A0A5N5KKG1_PANHP (Protein N-terminal glutamine amidohydrolase n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5KKG1_PANHP)

HSP 1 Score: 141 bits (356), Expect = 1.160e-34
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:  562 PNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQVPVWCQVLADHHNKPVLWDYHVLLLAQHPHG-NWIYDLDSTLPFPTPASHYMRHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPDHPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLD-MEHFVAQ 1128
            P R +CVYTS YCEENV  L   +   A      +HVVF+SN  + +P+W Q  +    +PV+WDYHV+LL  +P   +++YDLD+TLPFP P   Y R AF S   +  K+ +  RV+PA+   + FAS+RSHM    G +   PP +P +   +  S  N++++ISM+ + G G+V  L + ++HF A+
Sbjct:   15 PLREECVYTSCYCEENVWKLCECIQAQAVCPLDEVHVVFISNENKTIPIWKQK-SSRGGEPVIWDYHVVLLHLNPQAQSFVYDLDTTLPFPCPFDVYSREAFRSDELLKQKFRRKMRVIPAVTYLKKFASDRSHMMHPNGTWRMPPPPYPCIETTE--SKMNLDDFISMDPNVGLGKVYKLPEFVQHFGAK 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11086.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9A7_9PHAE8.970e-7362.37Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A7R9B0N2_TIMSH1.360e-3640.00Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
UPI001FED5BB12.840e-3640.74protein N-terminal glutamine amidohydrolase isofor... [more]
A0A819ISL8_9BILA1.020e-3540.74Protein N-terminal glutamine amidohydrolase n=4 Ta... [more]
A0A814ZE32_ADIRI1.520e-3539.04Protein N-terminal glutamine amidohydrolase n=3 Ta... [more]
A0A1B6JUJ8_9HEMI3.730e-3534.50Protein N-terminal glutamine amidohydrolase n=2 Ta... [more]
A0A6P3VJN1_CLUHA4.400e-3540.64Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A8K0CC05_9COLE5.200e-3539.38Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A6P8HJZ9_ACTTE7.350e-3541.95Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A5N5KKG1_PANHP1.160e-3440.31Protein N-terminal glutamine amidohydrolase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11086contigH-paniculata_contig11086:1010..7147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score151.0
Seed ortholog evalue7.4e-34
Seed eggNOG ortholog136037.KDR11405
Preferred nametun
KEGG rclassRC00010
KEGG koko:K21286
KEGG ReactionR11560
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008306,GO:0008355,GO:0032501,GO:0042048,GO:0042221,GO:0050877,GO:0050890,GO:0050896
EggNOG free text desc.Mediates the side-chain deamidation of N-terminal glutamine residues to glutamate, an important step in N-end rule pathway of protein degradation. Conversion of the resulting N- terminal glutamine to glutamate renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. Does not act on substrates with internal or C- terminal glutamine and does not act on non-glutamine residues in any position
EggNOG OGs39YVE@33154,3BB47@33208,3CU8D@33213,3SHBE@50557,41YDX@6656,KOG3261@1,KOG3261@2759
EC3.5.1.122
COG Functional cat.F
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons5
Model size2941
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.3077734-UTR-H-paniculata_contig11086:1009..28011622928815.3077734-UTR-H-paniculata_contig11086:1009..2801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11086 1010..2801 -
1691480630.830932-UTR-H-paniculata_contig11086:1009..28011691480630.830932-UTR-H-paniculata_contig11086:1009..2801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11086 1010..2801 -
1622928815.4360905-UTR-H-paniculata_contig11086:6745..71471622928815.4360905-UTR-H-paniculata_contig11086:6745..7147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11086 6746..7147 -
1691480630.8778646-UTR-H-paniculata_contig11086:6745..71471691480630.8778646-UTR-H-paniculata_contig11086:6745..7147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11086 6746..7147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.3376367-CDS-H-paniculata_contig11086:2801..29341622928815.3376367-CDS-H-paniculata_contig11086:2801..2934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 2802..2934 -
1691480630.8404882-CDS-H-paniculata_contig11086:2801..29341691480630.8404882-CDS-H-paniculata_contig11086:2801..2934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 2802..2934 -
1622928815.351042-CDS-H-paniculata_contig11086:3512..36291622928815.351042-CDS-H-paniculata_contig11086:3512..3629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 3513..3629 -
1691480630.8480046-CDS-H-paniculata_contig11086:3512..36291691480630.8480046-CDS-H-paniculata_contig11086:3512..3629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 3513..3629 -
1622928815.390313-CDS-H-paniculata_contig11086:5097..52331622928815.390313-CDS-H-paniculata_contig11086:5097..5233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 5098..5233 -
1691480630.8551738-CDS-H-paniculata_contig11086:5097..52331691480630.8551738-CDS-H-paniculata_contig11086:5097..5233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 5098..5233 -
1622928815.4039757-CDS-H-paniculata_contig11086:6031..62361622928815.4039757-CDS-H-paniculata_contig11086:6031..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 6032..6236 -
1691480630.8626163-CDS-H-paniculata_contig11086:6031..62361691480630.8626163-CDS-H-paniculata_contig11086:6031..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 6032..6236 -
1622928815.420216-CDS-H-paniculata_contig11086:6589..67451622928815.420216-CDS-H-paniculata_contig11086:6589..6745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 6590..6745 -
1691480630.870212-CDS-H-paniculata_contig11086:6589..67451691480630.870212-CDS-H-paniculata_contig11086:6589..6745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11086 6590..6745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11086.706.1prot_H-paniculata_contig11086.706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11086 2802..6745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11086.706.1

>prot_H-paniculata_contig11086.706.1 ID=prot_H-paniculata_contig11086.706.1|Name=mRNA_H-paniculata_contig11086.706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MGPCGKGWADPSGRADPAREADSVTGSASSTATSSDGSPHLTLSSMVPVP
VPVPNRTDCVYTSHYCEENVLCLFRDMAQAAAGAGATLHVVFVSNHARQV
PVWCQVLADHHNKPVLWDYHVLLLAQHPHGNWIYDLDSTLPFPTPASHYM
RHAFHSGTSMDNKYLQVFRVVPALECFEHFASNRSHMRSQWGEYSAKPPD
HPPLRGVKASSDHNMEEWISMNSSTGRGRVLSLLDMEHFVAQPSQRFS*
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mRNA from alignment at H-paniculata_contig11086:1010..7147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11086.706.1 ID=mRNA_H-paniculata_contig11086.706.1|Name=mRNA_H-paniculata_contig11086.706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6138bp|location=Sequence derived from alignment at H-paniculata_contig11086:1010..7147- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAAGAGACCATAAACCCTACAACTATGCGAAGATCAGAAAGTTGCGTG
AGAGGATAATTGACACGTAGTTGCCATATTCTTCGCCGACATGATCGAGG
TTAGGTCTTGTATCCTCTCTACTTATTCTTTGATATGGATCTGACCAATC
AGAATGTCCCGTGATACTGTCTCTGTGCCAACGTCATCATGAATCAGGGA
AAAAACATCCCACCAACTCGGACCGCATGAGACTGACGTCCATCTTAGCC
TCTGCATCGTCGGTTCCACGTATGTACAGCTTACTGAACGGACCGAAGAT
TTTTCACCCAAGCTACCGAATCTCGATCACCCCAGGGCCGTTTGCTGTAC
TGTACGTGATTGATATCTCCCACACCAGAAACGCTGCGGAAACGCTACTC
CGATGGGACCTTGTGGAAAGGGATGGGCAGATCCCAGCGGTCGGGCAGAT
CCCGCCCGCGAGGCAGATTCTGTGACGGGCTCGGCTTCGTCTACGGCGAC
ATCGAGTGACGGTAGCCCCCATTTAACGCTCTCGTCGATGGTGCCAGTGC
CAGTGCCAGTAAGTCTGTCTCGTGGAGAACCATACCGAGTTTAGATAGGA
ACAACTTCAAGCTGCAGGGGCACGTCGTTTCGCTTGAGCTACAGTGCAGA
ATTTCAATTCGAATAGACAGGGTGTTCGAGGCTGCGGTTGAGTCGACTAC
AGACAGTTGTTCTGTTATGGAAAAGCCCTTAGCATATGCGGTTATGGCAG
ACACTCTATTGCCTCTGTGTAAAGAGCATCCGCCAGAGCGAAACTTTGCT
TACAACATGTCTATCTTGGTTCACGCTTACGAACGTCTTTTCTACCCCTC
TAGGGGACCCGCTATGTCTCTCCTCTAATCCCGTCTCACGTTGCCGCACC
CTGTCGTTTAGGTTCCGAATCGGACTGACTGCGTTTACACGTCTCACTAC
TGCGAGGAGAACGTCTTGTGTTTGTTCCGGGATATGGCTCAGGCAGCGGC
GGGGGCGGGAGCCACGCTGCATGTAGTGTTCGTCTCTAATCACGCCCGCC
AGGTGCCCGTGTGGTGTCAGGTGTTGGCCGACCACCACAACAAGCCTGTA
CTTTGGGACTATCATGGTGAGTCTTCAGCGGACTGGGTTCGTTCTACCCA
AAACAACCCAGAAAAGCTTAGCCCAAGCTTGGTTTTGTTCTGTCTCAACT
CGATAGCTCTATATGTGTATCTGTCATCGATACAGTCAAACAGTACACTG
TCAGTGTGAGCGGGAGGTTTTTTGTCATGTACATGTGGTTCATTCACTCG
ATGGTAGTTGTGGTTTACCCACTCAGGGAAGATTCTCTCAAGTCTTATCG
TCCAGCTCCATCGATCAAATTGATGTTTGCGCCGTACATGCAGTGTGAGT
GTGCCTTCTCGTAGGCACATCTTCTGTCCCCTTCACAGTAGACGGAACAG
TCAGAAGTTTGGGGCTGGAGCATTAAATTTTGACGTCCGCTGACTGGATA
ACGGACATTTTGGATTTGCTGACTGTCACTTTAACGCTCAAGTTACGCAC
CGTAGCAGTATTTCATACTGGAATTAATACCAGCTCGCTGATACCGGGGA
ACATGGGACGGCTAACGTCGAGGTGATTTGTCAGAAACACGGTGAGAAGT
GCCAGATATCTACCACATATTTACGTGCTATTGACACGATACCCCCACAA
CAGTCAACAACAGTTATGGTCATTGTCAACCCACTGATTGTAGCTTCAAA
GTCTGCTCTTCAGGTGTATTGTGTTGTGTTGTATAGCTACTGGTTATTTC
TTGTGTAGGGCTAAACTAGGTTCAAATAACGCTACACATGGCCATCGTAA
TTCAACTGAATATTGGAGTACGTGAAAATATTGCGATCTGCCTCTGTACC
CGTTCCTTCCACAGTGCTTTTGCTGGCGCAACATCCGCACGGTAACTGGA
TCTACGACCTAGACTCAACGCTTCCGTTTCCCACGCCGGCTAGTCACTAC
ATGAGACACGCATTTCACAGTGGAACATCGATGGACAACAAGTACCTACA
GTGAGTGGAAATACACCATAATCTGCATATGCGACACTCTGCAGTTGCAG
ATTACAGAAAAAACACCTAAATGTCGGAACGTATTGCCGTTTACTGTATT
CATATTGCAACCGATCATGAAATCACATCGCGCGACTGTCTAATTATTCC
GAAGATACGCAGCTGACAGTCCCAGGTTCTGGGAGGCGGGGCAGGGCAAG
GGGAGGCAGGGTGCAGGAATGGAGAGGAAGGGGACTGATTCAATAAATTA
ACCAAATTGGGGGACGTCATAAAATAACTCCGTTGTACCCATCTTGAGGT
TATGTGGCTGGTCAAACTTCAGTTCTGTGCTCTTTTCCACTCTCTTAAGG
GATCAACCGAGGTCTGCTGCAATCCTATTTGTGCTGAAATATTGAAAATC
TTTCAACCCCCGAATAGTATTGTGACATTTTTTTACGTTCATGATAGTCC
CGTGTAGCGAAGTGAGGAGGGACTCGAAGGGGGGACATGCCGAATGGCGA
TGGACGCGATTGCTTTCGCCGGGGTTATATCATAACGCGTAGTTGTTAAC
ACACGAAAATTGTTGGTTGAGATTGCCCCGCTAGGTGTGAGAAGGGAGTG
CGCTCTTTGACCATCACTCACACACGTCAAGGGCTGGTTACAGCAGCCGC
AACACCGTATCTTGATGAAATAATCTCCTGAGAGCGTATGATCTCATGCT
TCCAAGGGTGCAACACAATTTGAGAAGCTTCATATTTTTTTTAAGTTACA
CTACAGCGAACGGGCCATCGGAACTCAAAAACTGTACTTCCACCAGATTT
TAAGGACTCTTTACACTGCCGCGCGGATGGCTGCAAGATCTGGTGGAGGC
CTTCCTTAAGACCAGGCGCAGAGATTGATGTACGAGTTTTTGGAGATTCG
ATTTGCAGAGCTCACTATGTGTGTTGTTGCAGCTGCCGCTTTTTTGTCAC
TCTAAAATACAGTGTAAATTTGAAGAAAATCCATCAACGCCACCATTGTT
CTTTATTCCTCTCTAATTACTACGCCGAGATGACGATGAATCGATTTTGA
AATATTCATGTTTTTGGCAGTAACGTCCTGGTTTTTCAATATTTTCGACG
AAAACCTAAGCGGTATTTTTCTGTGAGCACTCCCAGCACTAGTAAAAAAA
TACGTATTAAAAAATTCGCCGTACGTGACGAGTTTTGGCGAGAGTATGAT
CATTATGGTTCACAGTAATAAATTCTATCCTGGACTGATATATACACAAG
GCAATCGGGCGACTCAACACCTCACTTGACAGTTTCTCTTCTCCAGACAT
ATTTCTCTTTACTCGAATAGTTATTTCGATGAATATTTTAGTATTGGGAC
CCTTTGAGGATGATGCGGACATTCGACCTGTCTTCATGAATGTACTGATC
TCGGCACACTGTCTGTGTGTACGCCTGTACCTACCTGTGGCTGCCCCGTC
TCCTTCCCTGTTTTGTAGAGTGTTCAGAGTTGTTCCGGCGCTGGAGTGCT
TCGAGCATTTTGCTTCTAACCGGTCGCATATGCGCTCTCAGTGGGGGGAG
TACAGCGCTAAGCCGCCAGATCACCCGCCTCTCAGGTGCGCGCAACTTTA
CATGAGTACCGTTAGGCAGAACTGTTGCTGATTTCAGGCTCTTAGGTGCG
AAGAGTCAGCTGTACCGTCGTATCAAATCAACGTGTTCACTGGCTTGATG
GAATTATCGAGGATTGTTTTTGAGCTGTTGGATGCGCGGAGAAGCTTTGG
TGCCGTAACAGCATGGCTGTTGGAGCCGGTAAGCTGACCTTGTGAATGAG
CCGTCTTTCGCCGACGCACAGACTTCCGACTGTGCAGCCGTTTTTTTATG
TAGTCTCTTTTTACTAGGGCCGATAACTTACATTTACTTGAGCTAATCAC
ACTCGCGGGCTTTCGCCAACTCGAACATAAAGGTGTAGGCCCACCCACTT
CCACAAGGAATCGCAAATGTCGTGACATACTGCACACCTCCATACACAAG
CCCGTCAGATGTGTCGTCACCTCGTGGGGACTTACGCCATTTCCTCCATA
GGCGTTGAAATGCCTTATGTCAAACTTAACGACAGATTGCGCCTTGGTAG
ATGCATGATTGTCTCCCTTGTTCCTTTGGTCCTGTGTCGCATGCCGAACG
TTTTCCCGTGAAGGGGGGTGAAGGCGTCGAGCGACCACAACATGGAGGAG
TGGATAAGCATGAACAGCTCAACCGGTCGAGGCAGGGTTCTTTCTCTTCT
TGACATGGAGCACTTCGTCGCACAACCATCTCAACGCTTCTCGTAGTTGC
AGAGATGTCGGGCTCCCCGAAGGTGTTCGGTCCGATGCTCCCAACGTACA
CAGCTGTGGGCCCTTTTTCTGTCATATTTTTAAAAGGGGGTTTGAGAAGA
AGCTACAAAGAAAAGTTTTTTTTAGAGTAGACCCCGCAATTTTGGAGGTA
TTGCTAAATTATAACAGGTACTTTTTTTAACTCAACATGTGTACTTGTGC
GCAAGCAAGTCTTACGCTTGGTGTCATGTTTTCGGGAACAGATGGATGGG
TGATGAAGTTGAGCACTTTTCCCGAAGTTGGCGAAAAAAGATTAATCTTG
TTGTGTTGTGGTCGAGCTTGGAGTTTTGCAGACGAAAAGGCAAGATTCTA
TTACAGGCGTGAGTTGATGACCTGGGTTAAGGCTTTGTGTCCATGTGAAT
TTATACATAACCAAGTGTAAGTTTCGTCCACTGGGTGTTTTAGCAGCGTC
AGGATGGCCTGACATCCGATTTTGGTCTAGTGAAGGATTGTAAGGATCAG
GGTACGAGGTATCAACGCGGTTTTTTTGTCAGGGTGCACTTACTGTATGT
TGTATTTGGTATTCGAACAGCACGTTGTCAGGTCGTCTGAAGGTCGTCGT
TCGGCTTGCACGATGAGGGTATCAGATGTTTTTCTTGTCATGTTTTTCGC
CTCGTCTCCCTCCCCCCGGTATGTGATTGGGGTTAACCTCGGTCAAGTTC
ACGTCCGCAGTGCCCACCCGCTCGTTTTGGCCAAAACAGCGTCTGCTCAC
TGGCTCACACGGACTCCGGGAAAACTGATGGCTTTCTCAATTAAGACAGT
GCATGGTTGGTGTCTTCTGGATAGTGTGTGAATTTTCTAGGCGAGCGAGT
CTTATGTTCTCAGAGAGACCCTAAGCCCTGTGTAGGTTCTTGGACGCAGG
CAAAGGTACGCCCCATGTGTCGTGAGAGCGGTTTCACTATTCGTCAACTC
TCGGATAAGGGCGTGAGAAGTATTGGGGCGTGCGTGGTATATTGGATGTC
GGGAGTAGCGATGGGTGGTGGTGGTGGCATATCGTTTGGATCGATAGGAT
AGTCTTCTCACAGCACTAGGCTAGCGCGTTACAGCTGCAATTTGTTGAAG
GGGGGTCGCGTGACCGGGATTGTGGGCTTGTGTATTCTTGGGTATGTTTT
CGTGTTTCAGCGCGTTGTGAGGAGGTTGGTGAGGGGGGCGGTGTCGCCTT
CCCCCCTTCTTTCACGTCCCGCGCTTTTGCGGTGACAGCCGCGAGGGGCA
ACTCAGTGCACCGCAACTTTATGTCGCGTGTATAAGGGGGGTGAGCAAAG
CGTCCGGGGAACGACGGCTTAACTGGTTGTGCATTTGAGTCGTACCTCGT
ACCTGTCTTTTTCAAGGGGTTGTGGAGAGCATAGTGTATAGCATAACGAC
GGAGACCAGAATGCCCGCGCCCTTGCGGCGTCGCCTGGAGTAAAAACACC
GATGATAAGAATTTTCTTTTTCTATATTTTCTTGTCATGACGTGGTGTTC
GGTAGATGAAAGCGAGCTATCATCGTGCCCTGTCCTTGTGCCACAACTAC
GTGGCAGTCAGTTCAGACGGTACCTGGTGCTTGCTTACCTGCTCCCTCTC
GTTTGTTTTATGTTTTTGCTCGTGTTTCATGTTTTTGCTCGTGTTTCATG
TTGATCTCGTTTGTCTCAAGATAATTAAAAGGGAAGGAAACAATTTAACG
TAGATGAAGGTGTTGTGTGATCTTCTTTTCGACAGCAGGTTTCTTCTCGT
CATCGTCATTTTCATAGTCCAGACCACATCGCGCAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11086:1010..7147-

>mRNA_H-paniculata_contig11086.706.1 ID=mRNA_H-paniculata_contig11086.706.1|Name=mRNA_H-paniculata_contig11086.706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig11086:1010..7147- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACCTTGTGGAAAGGGATGGGCAGATCCCAGCGGTCGGGCAGATCC
CGCCCGCGAGGCAGATTCTGTGACGGGCTCGGCTTCGTCTACGGCGACAT
CGAGTGACGGTAGCCCCCATTTAACGCTCTCGTCGATGGTGCCAGTGCCA
GTGCCAATGGGACCTTGTGGAAAGGGATGGGCAGATCCCAGCGGTCGGGC
AGATCCCGCCCGCGAGGCAGATTCTGTGACGGGCTCGGCTTCGTCTACGG
CGACATCGAGTGACGGTAGCCCCCATTTAACGCTCTCGTCGATGGTGCCA
GTGCCAGTGCCAGTTCCGAATCGGACTGACTGCGTTTACACGTCTCACTA
CTGCGAGGAGAACGTCTTGTGTTTGTTCCGGGATATGGCTCAGGCAGCGG
CGGGGGCGGGAGCCACGCTGCATGTAGTGTTCGTCTCTAATCACGCCCGC
CAGGTGCCCGTGTGGTGTCAGGTGTTGGCCGACCACCACAACAAGCCTGT
ACTTTGGGACTATCATGGTTCCGAATCGGACTGACTGCGTTTACACGTCT
CACTACTGCGAGGAGAACGTCTTGTGTTTGTTCCGGGATATGGCTCAGGC
AGCGGCGGGGGCGGGAGCCACGCTGCATGTAGTGTTCGTCTCTAATCACG
CCCGCCAGGTGCCCGTGTGGTGTCAGGTGTTGGCCGACCACCACAACAAG
CCTGTACTTTGGGACTATCATGTGCTTTTGCTGGCGCAACATCCGCACGG
TAACTGGATCTACGACCTAGACTCAACGCTTCCGTTTCCCACGCCGGCTA
GTCACTACATGAGACACGCATTTCACAGTGGAACATCGATGGACAACAAG
TACCTACATGCTTTTGCTGGCGCAACATCCGCACGGTAACTGGATCTACG
ACCTAGACTCAACGCTTCCGTTTCCCACGCCGGCTAGTCACTACATGAGA
CACGCATTTCACAGTGGAACATCGATGGACAACAAGTACCTACAAGTGTT
CAGAGTTGTTCCGGCGCTGGAGTGCTTCGAGCATTTTGCTTCTAACCGGT
CGCATATGCGCTCTCAGTGGGGGGAGTACAGCGCTAAGCCGCCAGATCAC
CCGCCTCTCAGAGTGTTCAGAGTTGTTCCGGCGCTGGAGTGCTTCGAGCA
TTTTGCTTCTAACCGGTCGCATATGCGCTCTCAGTGGGGGGAGTACAGCG
CTAAGCCGCCAGATCACCCGCCTCTCAGGGGGGTGAAGGCGTCGAGCGAC
CACAACATGGAGGAGTGGATAAGCATGAACAGCTCAACCGGTCGAGGCAG
GGTTCTTTCTCTTCTTGACATGGAGCACTTCGTCGCACAACCATCTCAAC
GCTTCTCGTAGGGGGGTGAAGGCGTCGAGCGACCACAACATGGAGGAGTG
GATAAGCATGAACAGCTCAACCGGTCGAGGCAGGGTTCTTTCTCTTCTTG
ACATGGAGCACTTCGTCGCACAACCATCTCAACGCTTCTCGTAG
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