mRNA_H-paniculata_contig2589.7055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2589.7055.1
Unique NamemRNA_H-paniculata_contig2589.7055.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: D7FJH9_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH9_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.300e-16
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            EYT ER KLE MRDKMV+D+EKRGINPKYL+EMKAVDI+KMHMR
Sbjct:  471 EYTMERAKLEAMRDKMVEDMEKRGINPKYLTEMKAVDIHKMHMR 514
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A7S2V0X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0X2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E+ +ER KLE +RDKMV DLEK+GINPKYL+EMK  DI K+ MR
Sbjct:  245 EFLSERAKLEAIRDKMVSDLEKKGINPKYLAEMKMADIRKLQMR 288
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A7S3UXE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXE1_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 6.830e-10
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E+  ER KLE +RDKMV+D+ K+G+NPKYL+EM+A DI K+ MR
Sbjct:  485 EFLAERAKLEAIRDKMVEDMAKKGVNPKYLAEMRAADIQKLQMR 528
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A835YY84_9STRA (Tumor suppressor, Mitostatin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY84_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.330e-9
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E   ER +LE MRD+MV D+ ++G NPKYLSEM+AVDI KM+MR
Sbjct:  465 EAAGERARLEAMRDRMVHDMAEKGFNPKYLSEMRAVDIGKMYMR 508
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A7S2NTX6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTX6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E  TER+KLE +R++MV DL+K G+  KY SEM A+DI K HMR
Sbjct:  471 EIATERIKLENIRNQMVQDLKKIGVKQKYFSEMLALDIEKFHMR 514
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A812Z6W8_SYMMI (CFAP45 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z6W8_SYMMI)

HSP 1 Score: 50.4 bits (119), Expect = 2.610e-6
Identity = 22/40 (55.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 YTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKM 123
            +  ++ +LE +R+KMV DLE++G+NPKY+SEMK VDI K+
Sbjct:  124 FIQDQARLEAIREKMVRDLEEKGVNPKYMSEMKNVDIKKI 163
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A482RVA9_9ARCH (TPH domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVA9_9ARCH)

HSP 1 Score: 48.9 bits (115), Expect = 1.510e-5
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E   E  KL+V+RD+MV +LE +G+NPKYL+EMK VDI K+  R
Sbjct:  166 ELIREEEKLKVIRDRMVRELEAQGVNPKYLTEMKHVDIGKILKR 209
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BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Match: A0A7S3M6Y1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6Y1_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR 132
            E   E  KL V+RD+MV DL  +G+NPKYLSEM+ VDI K+  R
Sbjct:  459 ELIREEAKLAVIRDQMVKDLVAQGVNPKYLSEMRNVDIGKILKR 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2589.7055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJH9_ECTSI7.300e-1684.09TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V0X2_9STRA1.040e-1068.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UXE1_HETAK6.830e-1061.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YY84_9STRA8.330e-963.64Tumor suppressor, Mitostatin-domain-containing pro... [more]
A0A7S2NTX6_9STRA9.120e-759.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A812Z6W8_SYMMI2.610e-655.00CFAP45 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A482RVA9_9ARCH1.510e-556.82TPH domain-containing protein (Fragment) n=1 Tax=a... [more]
A0A7S3M6Y1_9STRA5.370e-556.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2589contigH-paniculata_contig2589:3082..3557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.0258188-CDS-H-paniculata_contig2589:3081..31321622929770.0258188-CDS-H-paniculata_contig2589:3081..3132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2589 3082..3132 -
1691481003.5162225-CDS-H-paniculata_contig2589:3081..31321691481003.5162225-CDS-H-paniculata_contig2589:3081..3132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2589 3082..3132 -
1622929770.0641212-CDS-H-paniculata_contig2589:3473..35571622929770.0641212-CDS-H-paniculata_contig2589:3473..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2589 3474..3557 -
1691481003.5250967-CDS-H-paniculata_contig2589:3473..35571691481003.5250967-CDS-H-paniculata_contig2589:3473..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2589 3474..3557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2589.7055.1prot_H-paniculata_contig2589.7055.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2589 3082..3557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2589.7055.1

>prot_H-paniculata_contig2589.7055.1 ID=prot_H-paniculata_contig2589.7055.1|Name=mRNA_H-paniculata_contig2589.7055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
EYTTERVKLEVMRDKMVDDLEKRGINPKYLSEMKAVDIYKMHMR*
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mRNA from alignment at H-paniculata_contig2589:3082..3557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2589.7055.1 ID=mRNA_H-paniculata_contig2589.7055.1|Name=mRNA_H-paniculata_contig2589.7055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at H-paniculata_contig2589:3082..3557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTACACCACGGAGAGGGTGAAGCTGGAAGTAATGCGCGACAAGATGGT
GGATGACCTGGAGAAGAGAGGCATCAACCCTAAGGTTGGTCATTTTCCCA
TTTCACATTGCATGTAAATCCCCAGCGTTAGACCTGAAGTTCCGATTGGA
GAAGAGCTGATCCGCGACGACGAAAATAACAGAAAAACGCGATGATGTTA
TCTATGTTGGAAGAAGAATTGATACGCTCAGCGAAATTCACCTTGCGTCG
TGTCATCCCTACCGTCTACCACAGGGTTCTCAAGACCCCGCGTCAACAAT
TTTTCGTTTAAAACCGCCGCTCATACTGTGACGTGTATTGACGTCTTTGA
AACTTTTCTCAACCTTAGATCCATTGGTCTATGACCCCTCACCCCCCCTG
CCTACTGTCAACGCTGCGTGCACAGTACCTGTCGGAGATGAAAGCCGTCG
ACATCTATAAGATGCACATGCGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2589:3082..3557-

>mRNA_H-paniculata_contig2589.7055.1 ID=mRNA_H-paniculata_contig2589.7055.1|Name=mRNA_H-paniculata_contig2589.7055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig2589:3082..3557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTACACCACGGAGAGGGTGAAGCTGGAAGTAATGCGCGACAAGATGGT
GGATGACCTGGAGAAGAGAGGCATCAACCCTAAGGAGTACACCACGGAGA
GGGTGAAGCTGGAAGTAATGCGCGACAAGATGGTGGATGACCTGGAGAAG
AGAGGCATCAACCCTAAGTACCTGTCGGAGATGAAAGCCGTCGACATCTA
TAAGATGCACATGCGATAGTACCTGTCGGAGATGAAAGCCGTCGACATCT
ATAAGATGCACATGCGATAG
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