mRNA_H-paniculata_contig11085.705.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11085.705.1
Unique NamemRNA_H-paniculata_contig11085.705.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A177UET0_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UET0_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 4.970e-9
Identity = 54/174 (31.03%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 DFGIRCWNCGKHGHGQWKCREKRKGKRLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRWTESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGE-LDVKGQGDVEGLIWTVEGAIRIIFCNVFYVPDASDSILSVERMVSQGMEAYFSSE 519
            D   RC  C K GH +  CR K + +    + +G S+ A YA       +  R+ H    ++   + C  +  E ++S + +I+DSG T H +T  R  F  F  V  S + T   G+ + V G G V+  + T  G I I    V YVP+A  ++LSV +MV++G++  F+ +
Sbjct:   60 DRNARCDYCKKKGHDEDVCRTKERHEE---EDKGVSDRADYA-------YTGRETHSETIYMGQVMLCTDK--EGTRSPLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTDNGDRMPVLGIGAVK--VCTENGEI-ISIDGVTYVPEAVSNLLSVSKMVNEGLKIVFAQD 217          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A177SWY1_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177SWY1_9BASI)

HSP 1 Score: 63.5 bits (153), Expect = 6.130e-9
Identity = 53/174 (30.46%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    1 DFGIRCWNCGKHGHGQWKCREKRKGKRLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRWTESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGE-LDVKGQGDVEGLIWTVEGAIRIIFCNVFYVPDASDSILSVERMVSQGMEAYFSSE 519
            D   RC  C K GH +  CR K + +    + +G S+ A YA       +  R+ H    ++   + C  +  E ++S + +I+DSG T H +T  R  F  F  V  S + T   G+ + V G G V+  + T  G I  I+    YVP A  ++LSV +MV +G++  F+ +
Sbjct:    6 DRNARCDYCKKKGHDEDVCRTKERHEE---EDKGVSDRADYA-------YTGRETHSETIYMGQVMLCTDK--EGTRSLLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTANGDRMPVLGIGAVK--VCTENGEIISIY-GAAYVPGAVSNLLSVSKMVDEGLKVIFAKD 163          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A177SY71_9BASI (Uncharacterized protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177SY71_9BASI)

HSP 1 Score: 60.1 bits (144), Expect = 1.880e-7
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWKCREKRKGKRLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRWTESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGE-LDVKGQGDVEGLIWTVEGAIRIIFCNVFYVPDASDSILSVERMVSQGMEAYFSSE 519
             RC  C K GH +  CR K + +    +  G S+ A YA       +  R+ H    ++   + C  +  E ++S + +I+DSG T H +T  R  F  F  V  S + T   G+ + V G G V+  + T  G I I      YVP A  ++LSV +MV +G++  F+ +
Sbjct:   69 ARCEYCKKKGHDEDGCRTKERHEE---EDNGVSDRADYA-------YTGRETHGETIYMGQVMLCTDK--EGTRSPLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTANGDRMPVLGIGAVK--VCTENGEI-ISINGAAYVPGAVSNLLSVSKMVDEGLKVVFAKD 223          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A8H8M0U2_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M0U2_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 5.800e-7
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWKCREKRKGK--RLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRW------TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPT-AGEG-ELDVKGQGDVEGLIWTVEGAIRIIFCNV-FYVPDASDSILSVERMVSQGMEAYF 510
            I+C+NCGK GH + +CR +  G   +   + +  +++   AK  + A  P      +     D V   P         E + +H +W++DSG +  H+TPQR+ F T+R +V  PIP   G+G ++D  G G +   +   +G     F +   +VPD + S++SV ++ ++     F
Sbjct:  247 IKCFNCGKLGHIKVQCRGQGGGAEGKASPQNQQAAKNKEKAKTSDPAPKPESAHIAVTSVATDNVPVMPTLYALPVVDEETAAH-NWLLDSGAS-RHMTPQREWFSTYRNLV-PPIPIRVGDGSKIDAIGIGRIHVTMRNRKGRNTDSFIDAALHVPDLNASLMSVTQLTNKNTNVLF 421          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A8H8NI06_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NI06_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 6.230e-7
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWKCREKRKGK--RLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRW------TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPT-AGEG-ELDVKGQGDVEGLIWTVEGAIRIIFCNV-FYVPDASDSILSVERMVSQGMEAYF 510
            I+C+NCGK GH + +CR +  G   +   + +  +++   AK  + A  P      +     D V   P         E + +H +W++DSG +  H+TPQR+ F T+R +V  PIP   G+G ++D  G G +   +   +G     F +   +VPD + S++SV ++ ++     F
Sbjct:  247 IKCFNCGKLGHIKVQCRGQGGGAEGKASPQNQQAAKNKEKAKTSDPAPKPESAHIAVTSVAADNVPVMPTLYALPVVDEETAAH-NWLLDSGAS-RHMTPQREWFSTYRNLV-PPIPIRVGDGSKIDAIGIGRIHVTMRNRKGRNTDSFIDAALHVPDLNASLMSVTQLTNKNTNVLF 421          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A8H8M6H5_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M6H5_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 6.420e-7
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWKCREKRKGK--RLGGKRRGTSEHAGYAKDQNVALHPVRQRHFMRRWLLDPVACAPRW------TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPT-AGEG-ELDVKGQGDVEGLIWTVEGAIRIIFCNV-FYVPDASDSILSVERMVSQGMEAYF 510
            I+C+NCGK GH + +CR +  G   +   + +  +++   AK  + A  P      +     D V   P         E + +H +W++DSG +  H+TPQR+ F T+R +V  PIP   G+G ++D  G G +   +   +G     F +   +VPD + S++SV ++ ++     F
Sbjct:  416 IKCFNCGKLGHIKVQCRGQGGGAEGKASPQNQQAAKNKEKAKTSDPAPKPESAHIAVTSVAADNVPVMPTLYALPVVDEETAAH-NWLLDSGAS-RHMTPQREWFSTYRNLV-PPIPIRVGDGSKIDAIGIGRIHVTMRNRKGRNTDSFIDAALHVPDLNASLMSVTQLTNKNTNVLF 590          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: UPI00063AEE8E (uncharacterized protein LOC105793376 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AEE8E)

HSP 1 Score: 57.8 bits (138), Expect = 8.990e-7
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  196 VACAPRWTESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGELDVKGQGDVEGLIWTVEGAIRIIFCNVFYVPDASDSILSVERMVSQGMEAYF 510
            V  A  +  SSK +  W+IDSGCT HH+     +F+       S +   G GEL +K +G  + +I T  G   I  C V YVPD   ++LSV +++ +G    F
Sbjct:  141 VFSASCFASSSKVNKIWLIDSGCT-HHIASDESMFKELDTSFESKVGI-GNGEL-LKARGKGKAVICTKLGIKTI--CEVLYVPDIDQNLLSVGQLLEKGYSLLF 240          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-6
Identity = 33/106 (31.13%), Postives = 53/106 (50.00%), Query Frame = 1
Query:  217 TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGELDVKGQGDVEGLIWTVEGAIRIIFCN-VFYVPDASDSILSVERMVSQGMEAYFSSERRRL 531
            T +S  H  WI+DSG T  H+T  R  F +  +  +S I     G + VKG+G  + +    +  +R    N V Y P+   ++LSV R+V  G+   F+ + R +
Sbjct:  266 TTNSMHHSGWIVDSGAT-RHITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKKFREI 370          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A1Y1LME8_PHOPY (CCHC-type domain-containing protein n=8 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LME8_PHOPY)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-6
Identity = 32/102 (31.37%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  217 TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPTAGEGELDVKGQGDVEGLIWTVEGAIRIIFCN-VFYVPDASDSILSVERMVSQGMEAYFSSE 519
            T +S  H  WI+DSG T  H+T  R  F +  +  +S I     G + VKG+G  + +    +  +R    N V Y P+   ++LSV R+V  G+   F+ +
Sbjct:  265 TTNSMHHSGWIVDSGAT-RHITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKK 365          
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Match: A0A8H8SJ14_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SJ14_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-6
Identity = 51/182 (28.02%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   10 IRCWNCGKHGHGQWKCREKRKGKRLGGKRRGTSEHAGYAKDQNVAL------HPVRQRHFMRRWLLDPVACAPRW------TESSKSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRSPIPT-AGEG-ELDVKGQGDVEGLIWTVEGAIRIIFCNV-FYVPDASDSILSVERMVSQGMEAYF 510
            I+C+NCGK GH + +C     G+  G + + + ++   AKD+  A        P      +     D V   P         E + +H +W++DSG +  H+TPQR+ F T+R +V  PIP   G+G ++D  G G +   +   +G     F +   +VPD + S++SV ++ ++     F
Sbjct:  248 IKCFNCGKLGHIKVQCH----GQGGGAEGKASPQNQQAAKDKEKAKTSDSAPKPESAHIAVTSVAADNVPVMPTLYALPVVDEETAAH-NWLLDSGAS-RHMTPQREWFSTYRNLV-PPIPIRVGDGSKIDAIGIGRIHVTMRNRKGRNTNSFIDAALHVPDLNASLMSVTQLTNKNTNVLF 422          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11085.705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A177UET0_9BASI4.970e-931.03Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A177SWY1_9BASI6.130e-930.46Uncharacterized protein (Fragment) n=1 Tax=Tilleti... [more]
A0A177SY71_9BASI1.880e-730.41Uncharacterized protein n=1 Tax=Tilletia controver... [more]
A0A8H8M0U2_9AGAM5.800e-728.09Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
A0A8H8NI06_9AGAM6.230e-728.09Copia-like polyprotein/retrotransposon n=2 Tax=Cer... [more]
A0A8H8M6H5_9AGAM6.420e-728.09Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
UPI00063AEE8E8.990e-735.24uncharacterized protein LOC105793376 n=1 Tax=Gossy... [more]
A0A5N4AX79_PHOPY1.300e-631.13CCHC-type domain-containing protein n=1 Tax=Photin... [more]
A0A1Y1LME8_PHOPY1.890e-631.37CCHC-type domain-containing protein n=8 Tax=Photin... [more]
A0A8H8SJ14_9AGAM2.150e-628.02Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11085contigH-paniculata_contig11085:3047..3577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.2633097-CDS-H-paniculata_contig11085:3046..35771622928815.2633097-CDS-H-paniculata_contig11085:3046..3577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11085 3047..3577 -
1691480630.8219492-CDS-H-paniculata_contig11085:3046..35771691480630.8219492-CDS-H-paniculata_contig11085:3046..3577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11085 3047..3577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11085.705.1prot_H-paniculata_contig11085.705.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11085 3047..3577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11085.705.1

>prot_H-paniculata_contig11085.705.1 ID=prot_H-paniculata_contig11085.705.1|Name=mRNA_H-paniculata_contig11085.705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
DFGIRCWNCGKHGHGQWKCREKRKGKRLGGKRRGTSEHAGYAKDQNVALH
PVRQRHFMRRWLLDPVACAPRWTESSKSHVHWIIDSGCTGHHLTPQRDLF
QTFRQVVRSPIPTAGEGELDVKGQGDVEGLIWTVEGAIRIIFCNVFYVPD
ASDSILSVERMVSQGMEAYFSSERRRL
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mRNA from alignment at H-paniculata_contig11085:3047..3577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11085.705.1 ID=mRNA_H-paniculata_contig11085.705.1|Name=mRNA_H-paniculata_contig11085.705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig11085:3047..3577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTCGGCATCCGATGCTGGAATTGCGGCAAGCATGGACATGGGCAGTG GAAGTGCCGTGAGAAGCGCAAGGGGAAACGACTCGGCGGCAAACGACGCG GCACAAGTGAACACGCGGGCTACGCAAAAGATCAAAATGTAGCGTTGCAC CCAGTTCGCCAACGTCACTTTATGCGCCGATGGTTGCTTGATCCCGTTGC CTGTGCACCGCGATGGACGGAATCATCTAAATCGCACGTACACTGGATAA TTGATTCGGGCTGCACCGGACATCACCTGACCCCGCAACGCGACCTCTTT CAAACATTTCGCCAGGTCGTGCGTAGTCCCATTCCCACAGCGGGCGAGGG GGAGTTGGATGTAAAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGACTG TGGAAGGAGCCATTCGCATCATCTTCTGCAATGTATTTTATGTACCTGAC GCATCAGACAGTATTCTATCGGTTGAGCGGATGGTGAGCCAAGGGATGGA GGCGTATTTTAGTTCGGAACGGAGACGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11085:3047..3577-

>mRNA_H-paniculata_contig11085.705.1 ID=mRNA_H-paniculata_contig11085.705.1|Name=mRNA_H-paniculata_contig11085.705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig11085:3047..3577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTCGGCATCCGATGCTGGAATTGCGGCAAGCATGGACATGGGCAGTG
GAAGTGCCGTGAGAAGCGCAAGGGGAAACGACTCGGCGGCAAACGACGCG
GCACAAGTGAACACGCGGGCTACGCAAAAGATCAAAATGTAGCGTTGCAC
CCAGTTCGCCAACGTCACTTTATGCGCCGATGGTTGCTTGATCCCGTTGC
CTGTGCACCGCGATGGACGGAATCATCTAAATCGCACGTACACTGGATAA
TTGATTCGGGCTGCACCGGACATCACCTGACCCCGCAACGCGACCTCTTT
CAAACATTTCGCCAGGTCGTGCGTAGTCCCATTCCCACAGCGGGCGAGGG
GGAGTTGGATGTAAAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGACTG
TGGAAGGAGCCATTCGCATCATCTTCTGCAATGTATTTTATGTACCTGAC
GCATCAGACAGTATTCTATCGGTTGAGCGGATGGTGAGCCAAGGGATGGA
GGCGTATTTTAGTTCGGAACGGAGACGGTTGGACTTCGGCATCCGATGCT
GGAATTGCGGCAAGCATGGACATGGGCAGTGGAAGTGCCGTGAGAAGCGC
AAGGGGAAACGACTCGGCGGCAAACGACGCGGCACAAGTGAACACGCGGG
CTACGCAAAAGATCAAAATGTAGCGTTGCACCCAGTTCGCCAACGTCACT
TTATGCGCCGATGGTTGCTTGATCCCGTTGCCTGTGCACCGCGATGGACG
GAATCATCTAAATCGCACGTACACTGGATAATTGATTCGGGCTGCACCGG
ACATCACCTGACCCCGCAACGCGACCTCTTTCAAACATTTCGCCAGGTCG
TGCGTAGTCCCATTCCCACAGCGGGCGAGGGGGAGTTGGATGTAAAGGGG
CAAGGAGACGTGGAAGGTTTAATTTGGACTGTGGAAGGAGCCATTCGCAT
CATCTTCTGCAATGTATTTTATGTACCTGACGCATCAGACAGTATTCTAT
CGGTTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTAGTTCGGAA
CGGAGACGGTTG
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