mRNA_H-paniculata_contig25868.7050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25868.7050.1
Unique NamemRNA_H-paniculata_contig25868.7050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 6.670e-40
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFRLHSKRFYAKADTCCDLLICDEAHRLKNA+TATNQALSALKCR+RVLLSGTPMQNDLEEFYAM DFTNPGV
Sbjct:  261 ETFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 334
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: W7TPR5_9STRA (Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.760e-30
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR H+K F A    CCD+LICDEAHRLKNAETATNQAL+ L CRRRVLLSGTP+QNDL EFYAM DFTNPG+
Sbjct:  328 ETFRGHAKSFPAGCAGCCDVLICDEAHRLKNAETATNQALAKLHCRRRVLLSGTPLQNDLNEFYAMVDFTNPGI 401
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.530e-29
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 KTFRLHSKRFY-AKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPG 219
            +TFR+H+ RF  A A+T CDLL+CDEAHRLKN +TAT++AL+ LKCRRRVLLSGTPMQNDLEEFYAM DF NPG
Sbjct:  106 ETFRMHAARFGGAHANTSCDLLVCDEAHRLKNGDTATSKALAGLKCRRRVLLSGTPMQNDLEEFYAMVDFANPG 179
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A388K9Y3_CHABU (Uncharacterized protein n=2 Tax=Streptophytina TaxID=131221 RepID=A0A388K9Y3_CHABU)

HSP 1 Score: 117 bits (294), Expect = 4.200e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFRLH K+F+ +++  CDLLICDEAHRLKN +T TNQAL+A+ CRRRVLLSGTPMQNDLEEF+AM DFTNPGV
Sbjct:  495 ETFRLHCKKFH-ESERSCDLLICDEAHRLKNDKTLTNQALAAMPCRRRVLLSGTPMQNDLEEFFAMVDFTNPGV 567
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A5J5BWB8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BWB8_9ASTE)

HSP 1 Score: 117 bits (293), Expect = 5.680e-29
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR+HS +F    D CCDLLICDEAHRLKN +T TN+AL+AL C+RR+LLSGTPMQNDLEEFYAM +FTNPG+
Sbjct:  314 ETFRMHSSKF--SQDGCCDLLICDEAHRLKNDQTLTNRALAALSCKRRILLSGTPMQNDLEEFYAMVNFTNPGI 385
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A8K1C4Y7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y7_PYTOL)

HSP 1 Score: 117 bits (292), Expect = 7.780e-29
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR+H++RF A A +CCDLLICDEAHRLKNA +  N+ALS+L CR+RVLLSGTPMQNDLEEFYAM DFTNP +
Sbjct:  320 ETFRMHAQRF-ADAPSCCDLLICDEAHRLKNANSQINRALSSLACRKRVLLSGTPMQNDLEEFYAMVDFTNPNI 392
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A024GTU5_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTU5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.010e-28
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR+H+ +F++  D CCDLLICDEAHRLKN+ +  N+AL+AL CRRRVLLSGTPMQNDLEEFYAM DFTNP +
Sbjct:  295 ETFRMHAAKFHSAPD-CCDLLICDEAHRLKNSHSQINRALAALACRRRVLLSGTPMQNDLEEFYAMVDFTNPDI 367
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A1D1XW50_9ARAE (DNA repair and recombination protein RAD54-like (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XW50_9ARAE)

HSP 1 Score: 114 bits (284), Expect = 9.330e-28
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR+HS +F      CCDLLICDEAHRLKN +T TN+AL AL CRRR+LLSGTPMQNDLEEF+AM +FTNPG+
Sbjct:  270 ETFRMHSSKFDRSG--CCDLLICDEAHRLKNEQTLTNRALDALPCRRRILLSGTPMQNDLEEFFAMVNFTNPGI 341
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A1V9YSL6_9STRA (DNA repair and recombination protein RAD54 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSL6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.010e-27
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            KTFR+H+++F A     C+LLICDEAHRLKNA +  NQAL+AL C+RRVLLSGTPMQNDLEEFYAM DFTNP +
Sbjct:  271 KTFRMHAEKF-ANEPQACELLICDEAHRLKNANSQINQALAALPCKRRVLLSGTPMQNDLEEFYAMVDFTNPNI 343
[Close]
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Match: A0A6A3YSV7_9STRA (Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YSV7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.280e-27
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVLLSGTPMQNDLEEFYAMADFTNPGV 222
            +TFR+H+++F A A  CCDLLICDEAHRLKNA +  N+ALS+L CR+RVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  308 ETFRMHAQKF-ADAPECCDLLICDEAHRLKNANSQINKALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25868.7050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE6.670e-4094.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TPR5_9STRA4.760e-3077.03Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A836CHF7_9STRA3.530e-2975.68SNF2 family N-terminal domain-containing protein n... [more]
A0A388K9Y3_CHABU4.200e-2975.68Uncharacterized protein n=2 Tax=Streptophytina Tax... [more]
A0A5J5BWB8_9ASTE5.680e-2972.97Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A8K1C4Y7_PYTOL7.780e-2974.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GTU5_9STRA5.010e-2871.62Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1D1XW50_9ARAE9.330e-2871.62DNA repair and recombination protein RAD54-like (F... [more]
A0A1V9YSL6_9STRA1.010e-2771.62DNA repair and recombination protein RAD54 n=1 Tax... [more]
A0A6A3YSV7_9STRA1.280e-2771.62Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25868contigH-paniculata_contig25868:2967..3188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue3.8e-34
Seed eggNOG ortholog2880.D7FYB3
Preferred nameRAD54L
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.4598856-CDS-H-paniculata_contig25868:2966..31881622929769.4598856-CDS-H-paniculata_contig25868:2966..3188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25868 2967..3188 +
1691481003.2813296-CDS-H-paniculata_contig25868:2966..31881691481003.2813296-CDS-H-paniculata_contig25868:2966..3188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25868 2967..3188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25868.7050.1prot_H-paniculata_contig25868.7050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25868 2967..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25868.7050.1

>prot_H-paniculata_contig25868.7050.1 ID=prot_H-paniculata_contig25868.7050.1|Name=mRNA_H-paniculata_contig25868.7050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
KTFRLHSKRFYAKADTCCDLLICDEAHRLKNAETATNQALSALKCRRRVL
LSGTPMQNDLEEFYAMADFTNPGV
back to top

mRNA from alignment at H-paniculata_contig25868:2967..3188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25868.7050.1 ID=mRNA_H-paniculata_contig25868.7050.1|Name=mRNA_H-paniculata_contig25868.7050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig25868:2967..3188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTTTCCGGCTGCATTCGAAGAGGTTCTACGCCAAGGCCGATACGTG
CTGCGACCTGCTGATCTGTGACGAGGCACATCGCCTGAAGAACGCAGAGA
CGGCCACGAACCAGGCCCTCTCGGCGCTCAAGTGCCGGCGGCGGGTTCTG
CTATCGGGCACGCCCATGCAGAACGACTTGGAGGAATTCTACGCCATGGC
GGACTTTACAAACCCAGGGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25868:2967..3188+

>mRNA_H-paniculata_contig25868.7050.1 ID=mRNA_H-paniculata_contig25868.7050.1|Name=mRNA_H-paniculata_contig25868.7050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig25868:2967..3188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTTTCCGGCTGCATTCGAAGAGGTTCTACGCCAAGGCCGATACGTG
CTGCGACCTGCTGATCTGTGACGAGGCACATCGCCTGAAGAACGCAGAGA
CGGCCACGAACCAGGCCCTCTCGGCGCTCAAGTGCCGGCGGCGGGTTCTG
CTATCGGGCACGCCCATGCAGAACGACTTGGAGGAATTCTACGCCATGGC
GGACTTTACAAACCCAGGGGTGAAGACTTTCCGGCTGCATTCGAAGAGGT
TCTACGCCAAGGCCGATACGTGCTGCGACCTGCTGATCTGTGACGAGGCA
CATCGCCTGAAGAACGCAGAGACGGCCACGAACCAGGCCCTCTCGGCGCT
CAAGTGCCGGCGGCGGGTTCTGCTATCGGGCACGCCCATGCAGAACGACT
TGGAGGAATTCTACGCCATGGCGGACTTTACAAACCCAGGGGTG
back to top