prot_H-paniculata_contig25868.7049.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig25868.7049.1
Unique Name	prot_H-paniculata_contig25868.7049.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	111

Homology

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.190e-53
Identity = 96/111 (86.49%), Postives = 103/111 (92.79%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 111
            MGMRE EG GCILADDMGLGKTLQSIAVLWTLLKQGK +GQPAV+RA+VVCPTSLVKNWEAEIDKWLK   GDCRVIALSETTR+QVVQSINLFLASM+Y+VL+VSYE  R
Sbjct:  157 MGMREFEGSGCILADDMGLGKTLQSIAVLWTLLKQGKAKGQPAVRRAVVVCPTSLVKNWEAEIDKWLK---GDCRVIALSETTREQVVQSINLFLASMVYRVLIVSYETFR 264

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 6.800e-43
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAV-KRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 111
            MG+R   G GCILADDMGLGKTLQSIAV+WTLLKQG  RG P V KR +VVCPTSLV NWEAE+DKWLK   G C+ +ALSET+RDQV+  INL+L+S IYKVL+VSYE  R
Sbjct:    1 MGLRNFPGSGCILADDMGLGKTLQSIAVMWTLLKQGTARGGPPVAKRCVVVCPTSLVSNWEAELDKWLK---GACKCVALSETSRDQVISGINLYLSSPIYKVLIVSYETFR 109

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A5B8N0Q2_9CHLO (SNF2-like helicase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0Q2_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 6.690e-33
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 0

Query:    2 GMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMI-YKVLVVSYEVRR 111
            G+++ +G+GCILADDMGLGKTLQ + +LWTLLKQG E   G+P VKRA++VCPTSLV NW++E DKWLK   G  RV+AL+E+ RD VV  I+ FL+    Y VL+VSYE  R
Sbjct:  432 GLKDFDGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLK---GKVRVLALAESKRDDVVMGIDQFLSPRRPYDVLIVSYETFR 541

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S2JIU9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIU9_9DINO)

HSP 1 Score: 121 bits (304), Expect = 1.120e-32
Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 111
            MG+RE EG GCILADDMGLGKTLQS+AV+WTLL QG   G+ A ++A+++CP SLVKNW AE DKWLK   G C+ +A++ +    V  ++  F  S  +K+L+ SYE  R
Sbjct:   59 MGLREYEGFGCILADDMGLGKTLQSVAVIWTLLTQGGAGGKAACRKAVIICPASLVKNWAAEFDKWLK---GRCKYVAIAVSGTAAVRGTLMTFRGSYEHKILIASYETFR 166

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S3FLG9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLG9_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 5.650e-32
Identity = 67/113 (59.29%), Postives = 84/113 (74.34%), Query Frame = 0

Query:    2 GMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMI-YKVLVVSYEVRR 111
            G+++ EG+GCILADDMGLGKTLQ + +LWTLLKQG E   G+P VKRA++VCPTSLV NW++E DKWLK   G  RV AL+E+  D V+  I+ FL+    Y VL+VSYE  R
Sbjct:  189 GLKDFEGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLK---GKVRVCALAESKADDVIMQIDQFLSPRRPYDVLIVSYETFR 298

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7J7QLK4_9CHLO (DNA repair and recombination protein RAD54-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QLK4_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 3.790e-31
Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 0

Query:    2 GMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLAS-MIYKVLVVSYEVRR 111
            G+R  EG GCILADDMGLGKTLQ I+++WTLL+QG     GQP  KRAI+VCPTSLV NW++E  KWLK   G CR +AL E++RD V+ +I  F+A    Y  L++SYE  R
Sbjct:  185 GLRLAEGRGCILADDMGLGKTLQGISLMWTLLQQGSPALGGQPIAKRAIIVCPTSLVSNWDSECTKWLK---GRCRTLALCESSRDDVIDAITRFIAPHSSYHCLIISYETFR 294

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A383VN37_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN37_TETOB)

HSP 1 Score: 124 bits (312), Expect = 7.090e-31
Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 0

Query:    2 GMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLAS-MIYKVLVVSYEVRR 111
            G+R  EG GCILADDMGLGKTLQ IA++WTLL+QG     G+P  KRAI+VCPTSLV NW++E  KWLK   G CR +AL E++RD V+ +I  F+A    Y  L++SYE  R
Sbjct:  185 GLRLAEGRGCILADDMGLGKTLQGIALMWTLLQQGSPALGGKPIAKRAIIVCPTSLVSNWDSECTKWLK---GRCRTLALCESSRDDVIDAITRFVAPHSSYHCLIISYETFR 294

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A090MF34_OSTTA (SNF2-related n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MF34_OSTTA)

HSP 1 Score: 124 bits (311), Expect = 9.600e-31
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASM-IYKVLVVSYEVRR 111
            MG+R+ +G GCILADDMGLGKTLQ I +LWTLLKQG + G PAVKRA++VCPTSLV NW+ E +KWLK   G  + + + ++TR +VV SI +FLA   + +V++VSYE  R
Sbjct:  180 MGLRDFDGTGCILADDMGLGKTLQGITLLWTLLKQGFD-GAPAVKRALIVCPTSLVSNWDDECNKWLK---GRVKTLPICDSTRAEVVSSIKMFLAPRHVAQVMIVSYETFR 287

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BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A516AGA3_LINPO (DNA repair and recombination protein RAD54-like n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AGA3_LINPO)

HSP 1 Score: 123 bits (309), Expect = 1.770e-30
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 111
            MG++  +G GCILADDMGLGKTLQS+AV+WTLL QG  RG+PA ++A+VVCP SLVKNW AE+DKWLK   G C+ +A++   + QV  +   F  S  ++VL+ SYE  R
Sbjct:  174 MGLKPFDGSGCILADDMGLGKTLQSVAVIWTLLTQGGPRGKPACRKALVVCPASLVKNWGAELDKWLK---GKCKYVAVAVVGQAQVSGTFASFKYSHEHRVLIASYETFR 281

[Close]

BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S4V9I8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V9I8_9DINO)

HSP 1 Score: 123 bits (308), Expect = 2.350e-30
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0

Query:    1 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 111
            MG++   G GCILADDMGLGKTLQS+AV+WTLL QG +RG+PA ++A+VVCP SLVKNW AE DKWLK   G C+ IA++     QV  +   F  S  +KVL+ SYE  R
Sbjct:  132 MGLKGFNGCGCILADDMGLGKTLQSVAVVWTLLTQGGQRGKPACRKALVVCPASLVKNWGAEFDKWLK---GRCKYIAVAVAGAAQVAGTFASFKHSREHKVLIASYETFR 239

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSB9_9PHAE	1.190e-53	86.49	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CHF7_9STRA	6.800e-43	71.43	SNF2 family N-terminal domain-containing protein n...	[more]
A0A5B8N0Q2_9CHLO	6.690e-33	60.18	SNF2-like helicase n=1 Tax=Chloropicon primus TaxI...	[more]
A0A7S2JIU9_9DINO	1.120e-32	54.05	Hypothetical protein (Fragment) n=1 Tax=Brandtodin...	[more]
A0A7S3FLG9_9CHLO	5.650e-32	59.29	Hypothetical protein n=1 Tax=Chloropicon roscoffen...	[more]
A0A7J7QLK4_9CHLO	3.790e-31	57.52	DNA repair and recombination protein RAD54-like pr...	[more]
A0A383VN37_TETOB	7.090e-31	57.52	Uncharacterized protein n=1 Tax=Tetradesmus obliqu...	[more]
A0A090MF34_OSTTA	9.600e-31	58.04	SNF2-related n=2 Tax=Ostreococcus tauri TaxID=7044...	[more]
A0A516AGA3_LINPO	1.770e-30	55.86	DNA repair and recombination protein RAD54-like n=...	[more]
A0A7S4V9I8_9DINO	2.350e-30	57.66	Hypothetical protein (Fragment) n=1 Tax=Alexandriu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..111 e-value: 1.8E-31 score: 110.8
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 6..109 e-value: 8.8E-20 score: 70.7
None	No IPR available	PANTHER	PTHR45629	FAMILY NOT NAMED	coord: 2..111
None	No IPR available	PANTHER	PTHR45629:SF6	DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKE	coord: 2..111
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 2..111 score: 9.987
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig25868	contig	H-paniculata_contig25868:413..1142 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig25868.7049.1	mRNA_H-paniculata_contig25868.7049.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig25868 410..1142 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig25868.7049.1 ID=prot_H-paniculata_contig25868.7049.1|Name=mRNA_H-paniculata_contig25868.7049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVV
CPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIY
KVLVVSYEVRR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038718	SNF2-like_sf
IPR000330	SNF2_N
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase