mRNA_H-paniculata_contig2582.7042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2582.7042.1
Unique NamemRNA_H-paniculata_contig2582.7042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A6H5JW83_9PHAE (MMtag domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW83_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 1.080e-91
Identity = 168/214 (78.50%), Postives = 183/214 (85.51%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHIPTLTLKQRELERLKKERERKEGGLTEASLVEIVDYEKEKQQKLEALAAANGNSGALRPGGAKTNRKRLREEKR 971
            MGDKRYRVGGTRGGQDQFKW+DVK D HRENYLGHSLLAPVGRWQRGKDLKWWN KKG    D ARAQAEMEKAR+KQLDEDLLNEALGLAPR VRTQQ ELS A+K+QLLEKG T + +GMDTER+SGLGAGPA  HEHIP+LTLK+RELERLK+ERERKEGGLTE SLVEIVDYEKE Q+ L A+ AA  N G    GG+  +RK L+EEKR
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWN-KKGEGGADAARAQAEMEKARVKQLDEDLLNEALGLAPRKVRTQQLELSKADKKQLLEKGNTVDGDGMDTERISGLGAGPAKLHEHIPSLTLKERELERLKRERERKEGGLTEESLVEIVDYEKE-QRDLAAVKAA-ANPGVAVSGGS--SRKSLKEEKR 209
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: D8LC81_ECTSI (MMtag domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC81_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 8.980e-80
Identity = 135/161 (83.85%), Postives = 145/161 (90.06%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHIPTLTLKQRELERLKKERERK 812
            MGDKRYRVGGTRGGQDQFKW+DVK D HRENYLGHSLLAPVGRWQRGKDLKWWN KKG    D ARAQAEMEKAR+KQLDEDLLNEALGLAPR VRTQQ ELS A+K+QLLEKG T + +GMDTERVSGLGAGPA  HEHIP+LTLK+RELERLK+ERER+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGKDLKWWN-KKGEGGADAARAQAEMEKARVKQLDEDLLNEALGLAPRKVRTQQLELSKADKKQLLEKGTTVDGDGMDTERVSGLGAGPAKLHEHIPSLTLKERELERLKRERERR 160
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A7S2DE77_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DE77_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.530e-38
Identity = 84/163 (51.53%), Postives = 107/163 (65.64%), Query Frame = 3 
Query:  339 KRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVED-------EARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHIPTLTLKQRELERLKKERE 806
            K YR GG RGGQDQF+W+DVK DA+RE+YLGHS+ APVGRWQ+GKD+ W+  K+G A E+        A      E   +K L+ED+L+E+LGLAP+  R   T L   E RQL+ KG    R+ +D ERV GLGAG +  HEH+P  TL ++EL R  KE E
Sbjct:   10 KNYREGGCRGGQDQFRWEDVKGDAYRESYLGHSINAPVGRWQKGKDILWYTRKQGQAKENITATLKRPAEDSRRAEILAVKALEEDMLSESLGLAPKRRRNNSTALEEQEVRQLIAKG-EMERDDVDVERVEGLGAGASRGHEHMPKKTLVEKELARRAKEAE 171
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A4D9CNJ9_9STRA (MMtag domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNJ9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.800e-36
Identity = 79/154 (51.30%), Postives = 109/154 (70.78%), Query Frame = 3 
Query:  345 YRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNK---KGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHIPT-LTLKQRELERLK 794
            YR GGTRGGQD+FKW+DVKD+ +RE+YLGHSL APVGRWQ+GKDL W+      K G  ED   AQ + E A +++ DE+++N ALG+AP+     ++ L  +E +QLL KG  + R+ +  ERV G+GA PA  HEH+P  L++ +RE+ER+K
Sbjct:    9 YRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLIWYTKAGKVKSGEAED-PEAQRQREVAEIRRRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKG-LSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMK 160
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: G4YNR6_PHYSP (MMtag domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNR6_PHYSP)

HSP 1 Score: 141 bits (355), Expect = 2.100e-35
Identity = 80/152 (52.63%), Postives = 99/152 (65.13%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQA-EMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHI--PTLTLKQR 776
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+            RA+A + E A  KQ DEDL+NEALG+AP+        LS +E ++LL++G  A R+GMD ERV GLGA P      +  P  TL +R
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWY-----AKTNKSQRAEALQAELALAKQRDEDLMNEALGIAPKRRHEPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAAGFVTAPKRTLAER 148
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A2P4XPU4_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPU4_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.020e-35
Identity = 81/152 (53.29%), Postives = 101/152 (66.45%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQA-EMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGP--ANHHEHIPTLTLKQR 776
             G   YR+GGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+            RA+A + E A  KQ DEDL+NEALG+AP+     +  LS +E ++LL++G  A R+GMD ERV GLGA P  A   E  P  TL +R
Sbjct:    3 FGKTNYRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWY-----AKANKSQRAEALQAELALAKQRDEDLMNEALGIAPKKRHEPREGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAER 148
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A080Z914_PHYPR (MMtag domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080Z914_PHYPR)

HSP 1 Score: 146 bits (369), Expect = 3.150e-35
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGP--ANHHEHIPTLTLKQR 776
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+   K   ++     QAE+  A  KQ DEDL+NEALG+APR  R     LS +E ++LL++G  A R+GMD ERV GLGA P  A   E  P  TL +R
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYA--KANKLQRAEALQAEL--ALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAER 148
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: A0A3R7J9M4_9STRA (MMtag domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9M4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.130e-35
Identity = 82/156 (52.56%), Postives = 103/156 (66.03%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGP--ANHHEHIPTLTLKQRELERL 791
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+   K    E     Q+E+  A  KQ DED++NEALG+AP+        LS +E ++LL++G  A R+GMD ER+ GLGA P  A   E  P  TL +R  +RL
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYA--KASKTERAKALQSEL--AMAKQRDEDIMNEALGIAPKRRHEPVEGLSASEMKELLKRG-EAERDGMDVERIEGLGAAPVEAAGFEMGPKRTLAERYKDRL 153
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: W2QYV0_PHYPN (MMtag domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QYV0_PHYPN)

HSP 1 Score: 145 bits (367), Expect = 5.860e-35
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQA-EMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGP--ANHHEHIPTLTLKQR 776
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+            RA+A + E A  KQ DEDL+NEALG+APR  R     LS +E ++LL++G  A R+GMD ERV GLGA P  A   E  P  TL +R
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWY-----AKANKSQRAEALQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRG-EAERDGMDVERVEGLGAAPVEAEGFETGPKRTLAER 148
[Close]
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Match: H3HC65_PHYRM (MMtag domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HC65_PHYRM)

HSP 1 Score: 144 bits (362), Expect = 7.840e-35
Identity = 83/151 (54.97%), Postives = 101/151 (66.89%), Query Frame = 3 
Query:  330 MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDLKWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQTELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGP--ANHHEHIPTLTLKQR 776
             G   YRVGGTRGG DQFKW+DVK+D +RENYLGHS+ APVGRWQ+GKDL W+   K    E     QAE+  A  KQ DEDL+NEALG+AP+  R     LS +E ++LL++G  A R+GMD ERV GLG  P  A+  E  P  TL +R
Sbjct:    3 FGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYA--KASKSERAEALQAELTLA--KQRDEDLMNEALGIAPKKRREHGEGLSASEMKELLKRG-EAGRDGMDVERVEGLGVAPVDADGFETGPKRTLAER 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2582.7042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW83_9PHAE1.080e-9178.50MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LC81_ECTSI8.980e-8083.85MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2DE77_9STRA4.530e-3851.53Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A4D9CNJ9_9STRA8.800e-3651.30MMtag domain-containing protein n=4 Tax=Monodopsid... [more]
G4YNR6_PHYSP2.100e-3552.63MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
A0A2P4XPU4_9STRA3.020e-3553.29T-complex protein 1 subunit zeta n=1 Tax=Phytophth... [more]
A0A080Z914_PHYPR3.150e-3555.63MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
A0A3R7J9M4_9STRA4.130e-3552.56MMtag domain-containing protein n=3 Tax=Phytophtho... [more]
W2QYV0_PHYPN5.860e-3555.26MMtag domain-containing protein n=10 Tax=Phytophth... [more]
H3HC65_PHYRM7.840e-3554.97MMtag domain-containing protein n=1 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2582contigH-paniculata_contig2582:7134..12097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.5
Seed ortholog evalue2.7e-68
Seed eggNOG ortholog2880.D8LC81
Preferred nameC1orf35
KEGG koko:K09498,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503,GO:0101002,GO:1904813
EggNOG free text desc.Kinase phosphorylation protein
EggNOG OGsKOG4520@1,KOG4520@2759
Ec32 ortholog descriptionKinase phosphorylation domain
Ec32 orthologEc-20_004770.1
EC3.6.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko03400,ko04147
Exons5
Model size2307
Cds size1692
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.8596559-UTR-H-paniculata_contig2582:7133..74191622929767.8596559-UTR-H-paniculata_contig2582:7133..7419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 7134..7419 -
1691481002.478799-UTR-H-paniculata_contig2582:7133..74191691481002.478799-UTR-H-paniculata_contig2582:7133..7419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 7134..7419 -
1622929767.97378-UTR-H-paniculata_contig2582:11768..120971622929767.97378-UTR-H-paniculata_contig2582:11768..12097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 11769..12097 -
1691481002.5478325-UTR-H-paniculata_contig2582:11768..120971691481002.5478325-UTR-H-paniculata_contig2582:11768..12097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 11769..12097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.8773174-CDS-H-paniculata_contig2582:7419..86121622929767.8773174-CDS-H-paniculata_contig2582:7419..8612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 7420..8612 -
1691481002.4897368-CDS-H-paniculata_contig2582:7419..86121691481002.4897368-CDS-H-paniculata_contig2582:7419..8612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 7420..8612 -
1622929767.8907702-CDS-H-paniculata_contig2582:8946..90441622929767.8907702-CDS-H-paniculata_contig2582:8946..9044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 8947..9044 -
1691481002.4984505-CDS-H-paniculata_contig2582:8946..90441691481002.4984505-CDS-H-paniculata_contig2582:8946..9044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 8947..9044 -
1622929767.9060876-CDS-H-paniculata_contig2582:9727..98651622929767.9060876-CDS-H-paniculata_contig2582:9727..9865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 9728..9865 -
1691481002.5159585-CDS-H-paniculata_contig2582:9727..98651691481002.5159585-CDS-H-paniculata_contig2582:9727..9865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 9728..9865 -
1622929767.9389412-CDS-H-paniculata_contig2582:10330..104541622929767.9389412-CDS-H-paniculata_contig2582:10330..10454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 10331..10454 -
1691481002.5287724-CDS-H-paniculata_contig2582:10330..104541691481002.5287724-CDS-H-paniculata_contig2582:10330..10454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 10331..10454 -
1622929767.9573386-CDS-H-paniculata_contig2582:11629..117681622929767.9573386-CDS-H-paniculata_contig2582:11629..11768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 11630..11768 -
1691481002.5382555-CDS-H-paniculata_contig2582:11629..117681691481002.5382555-CDS-H-paniculata_contig2582:11629..11768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 11630..11768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2582.7042.1prot_H-paniculata_contig2582.7042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2582 7420..11768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2582.7042.1

>prot_H-paniculata_contig2582.7042.1 ID=prot_H-paniculata_contig2582.7042.1|Name=mRNA_H-paniculata_contig2582.7042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp
MGDKRYRVGGTRGGQDQFKWDDVKDDAHRENYLGHSLLAPVGRWQRGKDL
KWWNNKKGGAVEDEARAQAEMEKARLKQLDEDLLNEALGLAPRAVRTQQT
ELSIAEKRQLLEKGGTANRNGMDTERVSGLGAGPANHHEHIPTLTLKQRE
LERLKKERERKEGGLTEASLVEIVDYEKEKQQKLEALAAANGNSGALRPG
GAKTNRKRLREEKRAKKNEKKEKKLARKEKNEKKRRKREKKRLKQAAKEV
ERSRPPPTTHEREPHDITTSNDITNTRSDNGGHNRYNPPSKSRLEEGGKK
RDIRGRTELDHDAWHRERDERRNHDHAHQKTRSPETKHGRHRHGGVSDEV
GGGKSRSGTRDDARDNHEQRSDCWRGRPRDSSRNRSRSRSRSVRRGRAAE
SPVSKYRRSRSRDRYQDRFPGRTSPSAHEAASSSIPRGQKGMRAERRNAP
QGGGERRDSRGRGKEMRGGDQRQAARGSPSPGSSSSVASSSDGSSSSSTN
HSRGGSSSSSSSSSLSRGHGTDRRSRHVGADKGGDIKGIGQDFSRSFARD
RRSNRDVRGWRED*
back to top

mRNA from alignment at H-paniculata_contig2582:7134..12097-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2582.7042.1 ID=mRNA_H-paniculata_contig2582.7042.1|Name=mRNA_H-paniculata_contig2582.7042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4964bp|location=Sequence derived from alignment at H-paniculata_contig2582:7134..12097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAATGTTCGTTCTGTCATTGGTAGGGTTTCTGTTAGGTCTATCGTGC
CACTGCGGGTCTGAGTGAAAAGGCTCGTTTACAAGCGCAAAACACATAAC
AGAGACACCGCACGAGACCAAATGTAGGTGTTCATATGGTAGAGAAGGTG
CTCTGTAGCTCAGCCACGGTATTCCTTTGTTTTGCTATCGTAGTTTCTAT
TGGCTCTTGGGTTTTCCCATCTATTCTTTCATTTGTTAATACATTTTTTT
GTAACTACGTGAGGGTCGAAGCAAGCGACTTAGCCTTTGTTTCGGAGCCA
AACGCTTCGTCTGGTATTGGAAATACGATATGGGCGACAAACGGTATAGG
GTTGGCGGAACCCGAGGTGGTCAAGATCAGTTCAAGTGGGATGATGTAAA
AGATGATGCTCACCGCGAAAATTATCTAGGACACTCACTTCTCGCGCCGG
TGGGAAGATGGCAAAGAGGTGAGGGAAATGCTGTCAATAACAGAGTTGTA
GCAGGTACTGACTTGGAGTACAGCCGGTACAAGTATGGCTATTTGAGTGT
ATCGTAATGCGGCAGTACAAACAGGGGTAGCAACACATGGCCCGTTGATT
GTATATGCCGCCGGGGCGTAGATTGGGCATACCCTGATTTGGTTGCCGCA
TACATCAACAGTTATAGTGGGTGGTGCGGTACTTCTATTTGCGTAAGCCA
TCAAGTTGGGCATCTCATCTTGTTCTAGGGGTGCTGTGTTGCACACTAAA
TGGCTGTTATCTTTAAACTCTTTCCGGCCCGGTTGCCAGCACTTCCGACA
GATTTCGACGCGCGATTTTTTACCGTCCCGCGTCGCAGAAGGGGGAGGGG
GGTGGTCGGGGGGGGGGGGGATGGGTTACCGAATGTCGACGGACACAATG
GCTTCAGTCGGCACGAGATCAGACCGTATGACGATAAAGCATGAAAAATA
CTATTAGAGCGGGATTGCGACTTATTTTGGTCATATATTTTCAATTTTCA
ATATCAGACCTCGACGCTGGGCTTGCGCTAGGTTAAAAAAAGCATCGATT
TTTTTCTACAGTATTCACGTACGTCTATGGCTCACTACAGTAGCCGCGAC
GCCGTGTGCTTGATATAAGAGATAGTATAGTTGACAGACTGCAGTACACA
CATGGGTTCCATCAAGTGATGGCGGCCAGCTGGACAAGGCAAACGGCATG
ATGCCGCAGAGTTGCGCACGACGACCGAAGAAACAGATTGTCCTACGTGT
AGTACATTTGGTGTCATACTGCATGCGGCACCGTATCTGCGGCACGTCAT
GAGGAGAGACGGGGGAACTGGCAAGCACCAGCATCTCCCGAAAGTTCCGT
CGCGAGTAATAACCGTTGCTTATGTGGCGTCCAGCTACGAGCGACGATAC
CCGCAGGCACAGCAGCAGACGGTCGACCACAGTCGTGGCAGTCGGGACAT
GACAAGATGACTAATATCTATCATATTTGGTAATTAGGCCTTGGGGTTCC
TGGAACAAAGTTCTTCTCTCTGTCAACTTTTTTTCATCTGGTGTAAGGGG
GTGAGGATGATCCTCACCTATGAGTAACCATCTCTCTAGACACCGCTTCA
ACATGTATCCACCCTTGCTCTTGTCATCGCGATCGTGGCGCAGGCAAAGA
TCTCAAGTGGTGGAACAACAAGAAGGGTGGGGCAGTGGAGGACGAGGCTC
GCGCCCAGGCCGAGATGGAGAAGGCTCGTCTCAAGCAGTTGGACGAGGAC
CTTCTCAACGAAGCCCTGTGAGTGCGCTTGATTTTTTATTTTATGCCTTT
CCCGGCGGGTGGCGAGCTTGTCGACTTCTCCCCCTGCTCCATACCCTTCT
TGTATAGCCTTCGGCCGCAACTGTATGAATGTCCGGTCATCTCCCTGGGC
AGTTTCTTGTTTACAAGTACAGGGCATACGGTTACAGCAGCCAATATTCC
GAAAATGCCGCCGCGCGGTCGAAGACTTGCGGCGGCACAATCGTTCGTAT
TTTTTCGGGTTCAAGTACTTGTACCGTACAAGTACCCTATTACAGACCAG
CATGATATCTGAGGAACCTAATTTAGGCATTGTTTATTTCAGGTTTGATT
GCATCAGGGCGTCAACGGTTCACTAGCAGTCACCATACAATGTGATGTAG
TTGAATGGCTGGAGTTTCAACGTGCCCGTAGCTTTTATCACTCATCTTTG
TCATTACTTTTCTGCCTCCCCCCCTCTTTCAGGGGGCTCGCTCCGAGGGC
TGTGCGCACGCAGCAGACAGAGCTAAGCATCGCAGAAAAGAGGCAGCTGT
TAGAGAAGGGGGGCACGGCAAACCGAAATGGCATGGACACGGAGAGGGTT
TCCGGCTTGGGAGCAGGACCGTAAGTTTAAAGAGTGTTTCAGTTTCACCC
AAGCCCTGCAGTAAGCGTCGTGCGCCATTGCTTAGTGTTGGATACTGTGG
AAGGTTATGATGCTGGACTCGGGTGTTCACTTCATCTTGACCCTTTCCAA
CGTGTATACTGTCCTCATGGTCGGGCGGGGTGTGATCCGTGGTTCGCACA
AACGTTTGCTTGTGGCACATAGTTACACAAAAGCTATGCCATTGGCCTTA
GTATTGGGTTTTTGTCCCTGCCGCTGTTTTGCCATGTGTGTCGGTGGGGC
ACGCACTAACATGTGCAAAGTAGTGTACAAAGTTGTTCACCCTAACAAGA
AGTAAGCTCCTCGGTCTCGGGTTCTATTTATTATCCACGCTTTAGGCCGT
GTGCTTTCATGGTGTAAGTTGCAGCCGGTCCTCTCTCGAATTAAGCCCTC
ACCGGGGTCGAGATTTTGCAGTTCAAGGGTGACCCAAGTTCGTATGAACT
AATCTGAAACGAGAGGAAAACTCTTTGAATGTGTTCGAAGTTGGAGGGTA
CTTCATGTATGACACACGACTATAGTAGTGGTGGTGTAGAGGGCAACCAA
CAAGATGTCACCAATGTTGAGTTCTCACGCGTCGGACCGAAGATAAAAAT
GGAGTTATTTTGTATTTTAATACCTATCCTCACGATTGCTGCTTTTTGCT
CAGGGCCAATCATCATGAACATATTCCGACGCTGACACTGAAGCAACGAG
AGTTGGAAAGACTCAAGAAGGAGCGGGAGAGAAAGGAAGGTGGCCTCACA
GGTGTGTAGTTACTTTCACTTGAACAAGCGTGACTGATGTAAGCTGCAAC
TTGCTGGTGGTTGGCGACTTCAATATCGTCACTACCAGGCGTCTCTGACG
AATGTCAATAGATCAATTCGACAGTATGGGCAAAGACTGCTTCTTGGCGT
GGATGCTTGTTCATGGCGAAGAGCCGATTCCGGGCGGACAAGTTTTACGC
GGTCTGGATTTCTATGTTTACCGAACATGCACCCTCGATATGAGGTGAGT
ATTTGCCTTGAAGGGGACATGAAAAATATCGAAACTTGCCCGTTGCTCCT
CGTGCTTCCGTCGTCTGATATGTTGGCATGTGCAGAGGCGAGTCTGGTGG
AAATTGTGGATTACGAGAAAGAAAAGCAGCAGAAACTCGAGGCGCTAGCA
GCCGCAAATGGAAATAGCGGTGCTCTCAGACCCGGGGGTGCCAAAACCAA
CCGCAAGCGCCTCCGCGAGGAAAAACGTGCCAAGAAAAATGAAAAGAAAG
AAAAAAAGTTGGCCAGGAAAGAAAAGAATGAAAAGAAGAGAAGAAAACGT
GAAAAGAAGCGGTTGAAACAGGCAGCAAAAGAGGTCGAGCGCTCTCGTCC
GCCCCCGACTACTCATGAGCGCGAGCCCCATGATATCACCACCTCAAACG
ACATAACCAATACTCGCTCCGACAACGGCGGGCACAATCGATACAACCCC
CCAAGCAAAAGTCGCCTTGAGGAAGGAGGGAAAAAACGAGACATCAGAGG
GAGAACAGAATTGGATCATGACGCATGGCACCGCGAACGTGACGAGCGTC
GGAACCATGATCATGCCCACCAAAAGACGCGCAGCCCGGAGACCAAACAC
GGGAGACATCGCCACGGCGGTGTGTCCGATGAAGTTGGTGGAGGTAAAAG
CCGGAGCGGAACCCGGGACGACGCCAGAGACAACCATGAACAACGGTCTG
ACTGTTGGCGAGGCAGACCCAGAGATAGTAGCAGAAACCGGAGCAGGAGC
AGGAGCAGGAGCGTTCGCCGAGGCAGGGCTGCGGAATCGCCTGTGAGTAA
GTATCGCAGAAGTCGATCGCGAGATCGGTACCAGGATCGGTTTCCTGGGA
GAACGTCTCCTAGCGCCCACGAGGCAGCTTCTTCCTCTATCCCGCGGGGA
CAGAAGGGCATGAGGGCTGAAAGAAGAAACGCACCTCAAGGGGGCGGGGA
AAGACGTGATTCGAGAGGCAGAGGCAAAGAGATGAGAGGCGGGGATCAGC
GGCAGGCGGCGAGGGGAAGCCCATCACCCGGTAGTAGTAGCAGTGTCGCG
AGTAGCAGTGATGGGAGCAGCTCTAGTAGCACTAACCACAGCCGCGGCGG
CAGTAGTAGCAGCAGCAGCAGTTCCAGTCTAAGCAGGGGCCACGGCACTG
ACAGGCGTAGTCGACACGTGGGGGCCGACAAAGGGGGTGATATAAAGGGT
ATAGGGCAAGATTTTTCCCGATCATTCGCGCGTGACAGGCGCAGCAATCG
AGACGTGCGAGGTTGGCGGGAGGATTGATGTTGTGTATATCTCAACATGT
TGATTCTGATTGTACACTGGAGGTGTTGGTATGGAGAGTGAAAGTGAAAG
AATATGCTGGAGCGATGAGGGACTGCGGTGATATACTCTTGTGCACATGA
GCTGACAGAGTAGTATGCTAGTGACGTTGAACTTCCCTGTCAAATATGTC
CAGTGTCTGGACGATTGTCGCTAGTCGACCAGAAATGTACACGAAGTGAA
TGCGTTCAATATTCAATGCAAACTATGTTAAATTGTTTTTGTAACTGTCT
CCGCCACACGTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2582:7134..12097-

>mRNA_H-paniculata_contig2582.7042.1 ID=mRNA_H-paniculata_contig2582.7042.1|Name=mRNA_H-paniculata_contig2582.7042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig2582:7134..12097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGACAAACGGTATAGGGTTGGCGGAACCCGAGGTGGTCAAGATCA
GTTCAAGTGGGATGATGTAAAAGATGATGCTCACCGCGAAAATTATCTAG
GACACTCACTTCTCGCGCCGGTGGGAAGATGGCAAAGAGATGGGCGACAA
ACGGTATAGGGTTGGCGGAACCCGAGGTGGTCAAGATCAGTTCAAGTGGG
ATGATGTAAAAGATGATGCTCACCGCGAAAATTATCTAGGACACTCACTT
CTCGCGCCGGTGGGAAGATGGCAAAGAGGCAAAGATCTCAAGTGGTGGAA
CAACAAGAAGGGTGGGGCAGTGGAGGACGAGGCTCGCGCCCAGGCCGAGA
TGGAGAAGGCTCGTCTCAAGCAGTTGGACGAGGACCTTCTCAACGAAGCC
CTGCAAAGATCTCAAGTGGTGGAACAACAAGAAGGGTGGGGCAGTGGAGG
ACGAGGCTCGCGCCCAGGCCGAGATGGAGAAGGCTCGTCTCAAGCAGTTG
GACGAGGACCTTCTCAACGAAGCCCTGGGGCTCGCTCCGAGGGCTGTGCG
CACGCAGCAGACAGAGCTAAGCATCGCAGAAAAGAGGCAGCTGTTAGAGA
AGGGGGGCACGGCAAACCGAAATGGCATGGACACGGAGAGGGTTTCCGGC
TTGGGAGCAGGACCGGGGCTCGCTCCGAGGGCTGTGCGCACGCAGCAGAC
AGAGCTAAGCATCGCAGAAAAGAGGCAGCTGTTAGAGAAGGGGGGCACGG
CAAACCGAAATGGCATGGACACGGAGAGGGTTTCCGGCTTGGGAGCAGGA
CCGGCCAATCATCATGAACATATTCCGACGCTGACACTGAAGCAACGAGA
GTTGGAAAGACTCAAGAAGGAGCGGGAGAGAAAGGAAGGTGGCCTCACAG
GGCCAATCATCATGAACATATTCCGACGCTGACACTGAAGCAACGAGAGT
TGGAAAGACTCAAGAAGGAGCGGGAGAGAAAGGAAGGTGGCCTCACAGAG
GCGAGTCTGGTGGAAATTGTGGATTACGAGAAAGAAAAGCAGCAGAAACT
CGAGGCGCTAGCAGCCGCAAATGGAAATAGCGGTGCTCTCAGACCCGGGG
GTGCCAAAACCAACCGCAAGCGCCTCCGCGAGGAAAAACGTGCCAAGAAA
AATGAAAAGAAAGAAAAAAAGTTGGCCAGGAAAGAAAAGAATGAAAAGAA
GAGAAGAAAACGTGAAAAGAAGCGGTTGAAACAGGCAGCAAAAGAGGTCG
AGCGCTCTCGTCCGCCCCCGACTACTCATGAGCGCGAGCCCCATGATATC
ACCACCTCAAACGACATAACCAATACTCGCTCCGACAACGGCGGGCACAA
TCGATACAACCCCCCAAGCAAAAGTCGCCTTGAGGAAGGAGGGAAAAAAC
GAGACATCAGAGGGAGAACAGAATTGGATCATGACGCATGGCACCGCGAA
CGTGACGAGCGTCGGAACCATGATCATGCCCACCAAAAGACGCGCAGCCC
GGAGACCAAACACGGGAGACATCGCCACGGCGGTGTGTCCGATGAAGTTG
GTGGAGGTAAAAGCCGGAGCGGAACCCGGGACGACGCCAGAGACAACCAT
GAACAACGGTCTGACTGTTGGCGAGGCAGACCCAGAGATAGTAGCAGAAA
CCGGAGCAGGAGCAGGAGCAGGAGCGTTCGCCGAGGCAGGGCTGCGGAAT
CGCCTGTGAGTAAGTATCGCAGAAGTCGATCGCGAGATCGGTACCAGGAT
CGGTTTCCTGGGAGAACGTCTCCTAGCGCCCACGAGGCAGCTTCTTCCTC
TATCCCGCGGGGACAGAAGGGCATGAGGGCTGAAAGAAGAAACGCACCTC
AAGGGGGCGGGGAAAGACGTGATTCGAGAGGCAGAGGCAAAGAGATGAGA
GGCGGGGATCAGCGGCAGGCGGCGAGGGGAAGCCCATCACCCGGTAGTAG
TAGCAGTGTCGCGAGTAGCAGTGATGGGAGCAGCTCTAGTAGCACTAACC
ACAGCCGCGGCGGCAGTAGTAGCAGCAGCAGCAGTTCCAGTCTAAGCAGG
GGCCACGGCACTGACAGGCGTAGTCGACACGTGGGGGCCGACAAAGGGGG
TGATATAAAGGGTATAGGGCAAGATTTTTCCCGATCATTCGCGCGTGACA
GGCGCAGCAATCGAGACGTGCGAGGTTGGCGGGAGGATTGAAGGCGAGTC
TGGTGGAAATTGTGGATTACGAGAAAGAAAAGCAGCAGAAACTCGAGGCG
CTAGCAGCCGCAAATGGAAATAGCGGTGCTCTCAGACCCGGGGGTGCCAA
AACCAACCGCAAGCGCCTCCGCGAGGAAAAACGTGCCAAGAAAAATGAAA
AGAAAGAAAAAAAGTTGGCCAGGAAAGAAAAGAATGAAAAGAAGAGAAGA
AAACGTGAAAAGAAGCGGTTGAAACAGGCAGCAAAAGAGGTCGAGCGCTC
TCGTCCGCCCCCGACTACTCATGAGCGCGAGCCCCATGATATCACCACCT
CAAACGACATAACCAATACTCGCTCCGACAACGGCGGGCACAATCGATAC
AACCCCCCAAGCAAAAGTCGCCTTGAGGAAGGAGGGAAAAAACGAGACAT
CAGAGGGAGAACAGAATTGGATCATGACGCATGGCACCGCGAACGTGACG
AGCGTCGGAACCATGATCATGCCCACCAAAAGACGCGCAGCCCGGAGACC
AAACACGGGAGACATCGCCACGGCGGTGTGTCCGATGAAGTTGGTGGAGG
TAAAAGCCGGAGCGGAACCCGGGACGACGCCAGAGACAACCATGAACAAC
GGTCTGACTGTTGGCGAGGCAGACCCAGAGATAGTAGCAGAAACCGGAGC
AGGAGCAGGAGCAGGAGCGTTCGCCGAGGCAGGGCTGCGGAATCGCCTGT
GAGTAAGTATCGCAGAAGTCGATCGCGAGATCGGTACCAGGATCGGTTTC
CTGGGAGAACGTCTCCTAGCGCCCACGAGGCAGCTTCTTCCTCTATCCCG
CGGGGACAGAAGGGCATGAGGGCTGAAAGAAGAAACGCACCTCAAGGGGG
CGGGGAAAGACGTGATTCGAGAGGCAGAGGCAAAGAGATGAGAGGCGGGG
ATCAGCGGCAGGCGGCGAGGGGAAGCCCATCACCCGGTAGTAGTAGCAGT
GTCGCGAGTAGCAGTGATGGGAGCAGCTCTAGTAGCACTAACCACAGCCG
CGGCGGCAGTAGTAGCAGCAGCAGCAGTTCCAGTCTAAGCAGGGGCCACG
GCACTGACAGGCGTAGTCGACACGTGGGGGCCGACAAAGGGGGTGATATA
AAGGGTATAGGGCAAGATTTTTCCCGATCATTCGCGCGTGACAGGCGCAG
CAATCGAGACGTGCGAGGTTGGCGGGAGGATTGA
back to top