mRNA_H-paniculata_contig2582.7041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2582.7041.1
Unique NamemRNA_H-paniculata_contig2582.7041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 2.720e-98
Identity = 146/261 (55.94%), Postives = 175/261 (67.05%), Query Frame = 3 
Query:  108 AAFCLVSLSLPVADAETQLRSSENLVSKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDS-QGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAYYRQNGEGVWDGDNDLGPL 887
            AA C   +++        L     L++ CYNFP  NF   N+++  YG SPHLV + G  A DFTLHDLDG  WNL + L  G GKPVV+I+GM TCPA+QGLD+ +GS   W YW E+NLV    DKAIFVH+YGPEPHP  PD NFDSG   PN WS+ RQ   Y+ RV  A  IR  THPDEV+L DYL GNPYS L QPVWC+YA GARPSVM+SSSG+IFYQQ W++T+ L  AID Y+ Q+G G WD      P+
Sbjct:    9 AALCCCGIAVSSGLLTPDLLPETELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFGMWTCPAFQGLDAAEGSGNTWAYWHEHNLVEQYGDKAIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYWEQDGAGTWDDGEGASPV 269
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BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.450e-93
Identity = 138/226 (61.06%), Postives = 162/226 (71.68%), Query Frame = 3 
Query:  213 NFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDS-QGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAYYRQNGEGVWDGDNDLGPL 887
            NF   N+V+  YG SPHLV + G  A DFTLHDLDG  WNL + L  G GKPVVLI+GM TCPAYQGLD  +GS   W+YWDE+ LV    DKAIFVH+YGPEPHP  PD NFD+G   PN+WS+ RQ   Y+ RV  A  IR  THPDEV+L DYL GNPYS L QPVWC+YA GARPSVM+SSSG++FYQQ WL+T+ L  AID Y+ Q+G G WD    + P+
Sbjct:   19 NFHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFGMWTCPAYQGLDVIEGSGNTWSYWDEHTLVEQYGDKAIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYWEQDGAGTWDDGEGVPPI 244
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BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.230e-75
Identity = 121/243 (49.79%), Postives = 156/243 (64.20%), Query Frame = 3 
Query:  144 ADAETQLRSSENLVSKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLD-GEAWNLADTLLKGGG---KPVVLIWGMSTCPAYQGLDSQGSDYRWT---YWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAYYRQNGE 851
            + A   LR    L   C++FPSNNFD   ++   YG+SP L+LETG  A DFT HD   GE WNL + L   GG   KPVVLIWGM TCPA+QG+  Q     W    Y DE +LV +  D+  FVH+YGPEPHPT P TNFD G ++ +YWS   Q  +YE+R+A    ++   HP++ I+ DY+PGNPYS+LI P+WCSY +GARP+  I+  GTIFYQQ WL+T DLA  +D +    G+
Sbjct:   25 SSAAVNLRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLVETYKDRVTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFLEGRGD 267
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BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 9.790e-72
Identity = 120/235 (51.06%), Postives = 158/235 (67.23%), Query Frame = 3 
Query:  141 VADAETQLRSSENLVSKCYNFPSNNFDTSNNVKA-SYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAYYRQ 842
            +  A  +LR   +L S C++FP+NNFD  N++KA + G +P+L L  G+ A DFTLHDL G  WNL +TL + G  PVV++WGM TCPA+QG  +     +  Y DE +LV +   KA FVH+YGPEPHP +P TNFD G     +WS+ +Q   YEERVA A  I    HP + ILVDYLPGNPYSELIQPVWCSY+MGARP  ++S  G +F+Q+ W +++ +  AID Y+ Q
Sbjct:  152 IPGASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLKGRRWNLGETLERTG-LPVVMVWGMFTCPAFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEYWCQ 385
[Close]
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 7.530e-71
Identity = 116/235 (49.36%), Postives = 157/235 (66.81%), Query Frame = 3 
Query:  141 VADAETQLRSSENLVSKCYNFPSNNFDTSNNVKA-SYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAYYRQ 842
            +  A  +LR   +L S C++FP+NNFD  N++KA + G +P+L L  G+ A DFTLHDL+G  WNL +TL + G  PVV++WGM  CP +QG  +     +  Y DE +LV +   KA FVH+YGPEPHP +P TNFD G     +WS+  Q  +Y+ER A A  I    HP + ILVDYLPGNPYSELIQPVWCSY+MGARP  ++S  G +F+Q++W +++ +  AID Y+ Q
Sbjct:  122 IPGANAELRPEADLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLEGRRWNLGETLERTG-LPVVMVWGMFICPGFQGYGTYPPWDKCGYRDEYDLVEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVYPQATSYDERAAMAQRINRLIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEYWCQ 355
[Close]
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.320e-64
Identity = 110/235 (46.81%), Postives = 143/235 (60.85%), Query Frame = 3 
Query:  150 AETQLRSSENLVSKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTDKA---IFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSE-----LIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDA 830
            A +QLR +  L   CY FP +NF+ +N +K +YG SPH+VL+ G AA DFTL+DLDG AW L++ L     +PV LIWGM TCPA++GL +        YWDE  LV +         F H+ GPEPHP  PDTNFDSG +  N+WS   Q  TY+ RVA A A+    HP+  +L D LP  PY +       QPVWCSYA GAR +V+I + G +   Q+W +  D+A AI+A
Sbjct:    1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEA 232
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BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA)

HSP 1 Score: 174 bits (441), Expect = 7.540e-47
Identity = 94/235 (40.00%), Postives = 131/235 (55.74%), Query Frame = 3 
Query:  141 VADAETQLRSSENLVSKCYNFPSNNFDTSNNVKA--SYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSEL---IQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDA 830
            +A A  +L  +  L S C+  P   F   +N+    + G++  +    GD+A DFTL+DL G    L+ TLL+   KPV LIWGM TCPA+QGL S     + + W+E ++V    D   F+H+ GPEPHP  PD NFD G +    WS  RQ   Y+ER+  A  +  Y HPD  +L D  PGN Y+       PVWC+  + +R ++++   GTI + QSW   DDL+ AIDA
Sbjct:   20 LAVALAELDPASQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDLAGNEVTLS-TLLED--KPVALIWGMWTCPAFQGLRSDYPFDQNSRWEEWDVVEKYKDVVTFLHLVGPEPHPLAPDQNFDKGYVWMESWSTVRQPTNYDERLVLANKVAEYVHPDATVLADLYPGNSYAAADVSSNPVWCTMGLHSRSALLVDQDGTITFSQSWFRKDDLSAAIDA 251
[Close]
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.010e-45
Identity = 91/226 (40.27%), Postives = 124/226 (54.87%), Query Frame = 3 
Query:  192 CYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATD----FTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDY--RWTYWDENNLVTSRTDKAI-FVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELI-------QPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAID 827
            C++FP  +F T+N VK +YG SPH+ +  GD  +      TL    G +W    T  +  GK  VLIWGM TCPA+QGL + GS      +Y DE +LV +  +K + F+H+ GPEPHP  PD NFDSG+ L NYWS   Q  T+++R+  A       HP  + LVD L   P            QP WC+  +GAR +++I   GT+ + Q W    DLA A+D
Sbjct:   25 CFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSWKSLGT--ETSGKISVLIWGMWTCPAFQGLGTGGSPPFDECSYRDEYDLVETYANKGVRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALD 248
[Close]
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.520e-35
Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 3 
Query:  159 QLRSSENLVSKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQG-SDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQ-------PVWCSYAMGARPSVMISSSGTIFYQQSWLNTDDLAEAIDAY 833
            +L+++ NL+ KC+NFPS++FD  N++ A Y   P  ++  G  A DF L  LD   + L D +     KPVV+++GM TCPA+QGL  +   +  ++ +D+  LV        FV++Y  EPHP  PD NFD+G  +   WS  RQ  TY +R   A  +    H   ++LVD L      EL +       PVWC+Y  G+R + +I   G ++  Q W +   +A A++ +
Sbjct:   51 RLQNTSNLIGKCFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDDNVYYLRDLIRT---KPVVMVYGMLTCPAFQGLYLEDHKESHFSKYDQWALVDKYHKDFHFVNLYSVEPHPMAPDKNFDTGGHVEYAWSTFRQPRTYRDRGYFAQNLAEELHEKSILLVDNLGNEKLPELKENNIPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQGWFHATTMAGAMEEH 280
[Close]
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Match: A0A7S2G552_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G552_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.650e-23
Identity = 69/216 (31.94%), Postives = 101/216 (46.76%), Query Frame = 3 
Query:  162 LRSSENLVSKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNLADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTDKAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAIRPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQQSWLNTDD 809
            L+   +L++ C+ +P  +F   N+V + YG+ P+L   TGD A DFT+  +DGE  NL   L     KPVV+I+GM TCP              T   E NL     D   F+H+Y  +PHP  P  N D GR+    +S   +   Y  R+  A A       +  ++VD    +P      P+WC+Y    R + +I   G I   Q+W +  D
Sbjct:   35 LQGEHSLLTDCFGWPEASFSPENSVLSLYGQQPYLTRRTGDPAVDFTMKTIDGEVVNLKALLST---KPVVMIFGMYTCPVTHA----------TLGHERNLTELYGDDVHFLHIYSMDPHPESPQKNPDIGRVWEFDYSTIERPNNYTGRLELAKATAGTWGLNSKVIVDE--ASPLRN--NPLWCTYGPSPRSAHLIRQDGIIQLAQTWFDGSD 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2582.7041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JSG9_9PHAE2.720e-9855.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC80_ECTSI1.450e-9361.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M4_9PHAE1.230e-7549.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKN7_9PHAE9.790e-7251.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCJ3_ECTSI7.530e-7149.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1L4_9STRA1.320e-6446.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2RV85_9STRA7.540e-4740.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3K7C6_9STRA2.010e-4540.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2C362_9STRA6.520e-3534.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G552_9STRA6.650e-2331.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2582contigH-paniculata_contig2582:574..6419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1744
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2582.7041.1prot_H-paniculata_contig2582.7041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2582 609..5673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.7438054-UTR-H-paniculata_contig2582:573..6081622929767.7438054-UTR-H-paniculata_contig2582:573..608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 574..608 +
1691481002.4284565-UTR-H-paniculata_contig2582:573..6081691481002.4284565-UTR-H-paniculata_contig2582:573..608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 574..608 +
1622929767.8136473-UTR-H-paniculata_contig2582:5673..64191622929767.8136473-UTR-H-paniculata_contig2582:5673..6419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 5674..6419 +
1691481002.4699316-UTR-H-paniculata_contig2582:5673..64191691481002.4699316-UTR-H-paniculata_contig2582:5673..6419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 5674..6419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.7670531-CDS-H-paniculata_contig2582:608..10401622929767.7670531-CDS-H-paniculata_contig2582:608..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 609..1040 +
1691481002.4398675-CDS-H-paniculata_contig2582:608..10401691481002.4398675-CDS-H-paniculata_contig2582:608..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 609..1040 +
1622929767.781922-CDS-H-paniculata_contig2582:1759..19511622929767.781922-CDS-H-paniculata_contig2582:1759..1951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 1760..1951 +
1691481002.4523308-CDS-H-paniculata_contig2582:1759..19511691481002.4523308-CDS-H-paniculata_contig2582:1759..1951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 1760..1951 +
1622929767.7992308-CDS-H-paniculata_contig2582:5334..56731622929767.7992308-CDS-H-paniculata_contig2582:5334..5673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 5335..5673 +
1691481002.459675-CDS-H-paniculata_contig2582:5334..56731691481002.459675-CDS-H-paniculata_contig2582:5334..5673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 5335..5673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2582.7041.1

>prot_H-paniculata_contig2582.7041.1 ID=prot_H-paniculata_contig2582.7041.1|Name=mRNA_H-paniculata_contig2582.7041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=321bp
MGITQFSLHLHPSPKMMCSSLSLLAAFCLVSLSLPVADAETQLRSSENLV
SKCYNFPSNNFDTSNNVKASYGKSPHLVLETGDAATDFTLHDLDGEAWNL
ADTLLKGGGKPVVLIWGMSTCPAYQGLDSQGSDYRWTYWDENNLVTSRTD
KAIFVHMYGPEPHPTVPDTNFDSGRLLPNYWSLTRQQFTYEERVAAAMAI
RPYTHPDEVILVDYLPGNPYSELIQPVWCSYAMGARPSVMISSSGTIFYQ
QSWLNTDDLAEAIDAYYRQNGEGVWDGDNDLGPLGEEKTAKLLPKAAARA
KREEAEGVVGGRLEKKARAP*
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mRNA from alignment at H-paniculata_contig2582:574..6419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2582.7041.1 ID=mRNA_H-paniculata_contig2582.7041.1|Name=mRNA_H-paniculata_contig2582.7041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5846bp|location=Sequence derived from alignment at H-paniculata_contig2582:574..6419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTAGAAGACGAGAACTGCCAGAGTAGCTCATTCGATGGGCATCACACAG
TTTAGTTTGCATCTCCACCCTTCCCCCAAAATGATGTGCTCATCGTTGTC
TCTGCTGGCGGCGTTCTGCCTTGTAAGCTTGTCGTTGCCGGTCGCAGATG
CCGAGACCCAGCTTCGATCATCGGAGAATCTCGTGAGCAAATGCTACAAC
TTTCCCTCAAATAATTTCGATACCAGCAACAACGTCAAGGCCTCCTATGG
CAAAAGCCCTCACTTGGTGCTCGAGACGGGAGATGCCGCAACAGACTTCA
CATTGCACGATCTCGATGGCGAGGCATGGAATCTTGCGGACACGCTTTTG
AAGGGGGGCGGAAAGCCGGTGGTGCTGATATGGGGTATGTCGACTTGCCC
GGCGTACCAGGGCTTGGACTCTCAAGGATCAGACTACCGATGGACCTATT
GGGACGAGAACAATCTGGTGAAAAAGTAAAATATATCAATCCTCTGATGT
TGCCTTTCTGGTATTTGCAGTCATGACCTGTTGTCCTCGTCACATTGTAT
CTTTATCTACAGCTTGGATAGCTTAGAGCGTGCAGTCCTTTGACCCCAGT
TATAGGGGTTGGGCACTGCAGCCCTGAGTATTCTCAAGTTTTGGGTTCAA
AGCTGCACTAATACCTCAGATTGTGAAGTGCGGTGAGACTCTTTTTAAAC
GAGACAAGGTTATTATTTTGTATCAAAATATAGTATTGGTAGGTCGGGAA
ATGTCCTACAGTGCATCAGGATTGGCAGTGTCGGTAGTCACGCCTATCTC
AGCCATCCACTGTCCATTTGTGAGGCGCGTTGATCGTGACACGACCACTT
CAGGTCCTGCACATCGGCGTTGTCAGGTCACAATATCGTTCTGAGTTGAC
CCAACAAAAAAGTGATGAAAAATATCGCCTCCTTCTTTAACCGGCTCGGT
TTGCCGGCCAAACTTTTTTATTTCCGTAAGCAGTGATCGAGATTGCACGC
AAATCTCGACGTCACGCCTTCTGCCAAAGGCACAGCTCTTTCCCCAAACC
CTTCCGGTCTTACGCCCATCTCAGCGGTACGCCGAGTATATCCAAGAAGT
AACGGAACACAACAAATCAAGTTGCACATCTCTGACCCTTTGTTGTTGCT
GTCGTGGTCTGTGTTGTACTCGATATGTTGATGCAGGTAACCTCCCGCAC
TGACAAGGCCATATTTGTCCACATGTACGGCCCAGAGCCGCACCCCACGG
TGCCCGACACAAACTTTGACTCTGGAAGGCTGCTACCCAACTACTGGAGC
CTTACCCGGCAACAATTCACGTATGAGGAGCGAGTGGCAGCAGCGATGGC
GATTCGGCCATACACTCACCCTGATGAGGTACATACATGAAAATAGAAAT
AGAGAGGAGCGCCATGCAACCATGTGGTGGTGAACTGTTCCAAAACAGGC
AGTTGTACTGAAGGTTGCGGTTATGTTATCTCTCGTGATATTTTACTGCT
GTACGAAAGTCAGTGCAGTATTCAAAACACTGAAATAGACAAATACGGGA
AAATGTTCTTCACACACGTAACTAGAAATCTTTTCATCGTCTATTTTCAG
TGTTCTTTTACCTCTTGTACCGTCGAATCACATCGAATACCCGTCCAATC
CCCCATCTTCGAAGACAACGGAAAAAGATGGATATTACATTTTTGTGTCG
GAGATAGAGCCGCCGCCGCTAGTGACTCAGACAGTCTCGGACAGTACCTG
TACTGTATCATAGATTAAGTTAGCGTGGTCTGGCCTACACTGCAATGGCT
GCATCATTCGACATCTATGTGATTTTTATCCTTACGGTACATCCTAGTGC
AGAAGAGGGTTGACGAAATAGATGTTTGGCCAATTCTTATGGGGATTGAA
AAATTCAAATTGGAAATTTGATTTTTGCAATAATCCAAGTGAGAAATATC
GAATTTAAAAATCGCATCGCCACGTCTTAAGGGACATCAGGGTTTTTGCT
GAGGTGTTTTAAACTTGGGAAGGCGGTTGTGACCGCAAGAAGTAGATCGT
AATGCCATGGTCTACTAGTTTAAAATTGCGTGGGATATGCAGTACGCACC
CTAAACATATTTTACCACAGGCAGGATGGCGAGAGTAGAAAACAGTTGCG
CAACTGCACCTATCTCGTTGTGCTTGGCATACAGCCATCAGCATTTCTTC
CTCGTCGCAGGATGATTCGTAGTTATCCTGCCCCACTGGTATGATCACAG
ACAGGGTGTATGCTCCGTCGCAAAGCACACGGTAGTGTGTTGTACTGTCC
TGTTCTATCGTACTACTGACTGTCTGTACTACTGTACTGTAGGTGCTCGC
ACGATAACGGCGGGCATGGAGTCATTTTTCACCGTTGCAAAATTTCTAAT
CGTGCCAAGCCTTGCTTGGAAATTAGAAAAAATTCCAAGTGAGCTGAGGT
GCGTTTTGCCCCAATTGGATTTTTTCTAAAAAAAATCGCATCAAAATGTC
CCAAAAGAGTTGGCAATTGGATTTTTTGAATATTTCCATTTTCTTTTTTG
CATCCCGATAAGAATTGACCTTGGGCCAATTCCTGCGGGGGGTTTTCAAC
ATTGAAGTTGGCCGGCTTTTTCAGCTTTTGGCAGCTTGAAAGGATTGTTC
TATATTCAAAAAATGAAATGCAGGCCATTTGTTACGGCAATCAAAATATA
CCTTTTTACCAGTATTTTATGGGGATAAAAAATGAGCTGAAAGCGGACAG
CGGACGTGGTGTCACGGATTGCCTATTCGTTTGGCACGTGGTTTCCACAA
CGAAGAGGGTGATGGAATGCAATCTATGCCAAAACAAAAGGCAGCAGGTC
TTGCATAATCGCGATGTCGAGCGCCCTTCTTCAGTCGCTGTCTCTAAAGT
ACAAGGCCAATGACACAGTATACCCAACGGTGTGTACAAAAAATGTCTGC
CACCCAAATACCAGTTCGTTGTATATGTGTACTGTCTCTAGGATCGCCTT
CCTTGCGCTCACTTTTTGGACAGCGGAACAACGAACCAAAGCATTGTATA
AATGCAAAGGTGTTATCGCTCTCGGTCGGCTCGCTCCTCGCAATGCCGTT
CGTAGTGCCACACCTTTGCTTGTATCCCTAGCTGCTTCATCCACTGTGCT
GTGATAGAGCTCTTCTGCTTGTATTTTCAATCTTGAGTGACTTTTTCCTA
ATCTGAATTCAGCGCGAGCTCCTTCTCGGAAAGCGGGACGGAAGACAGAC
CGGTCCTATGAGCATGGCAAATCAACTTTTTCCCGTCCGAATTTTGTCAA
GATTTTGATGACTTTGGATTTTAATTTCCATAACAGTCGGTCTTATGGTG
GAGTCATTTTCCAAACTGAACGGTTGATTGTTCATGTTTTCCACAGCTTT
AACGTGCAGAAACCGAAAAAAGAAAAATGTTGTCTCCAATACGGTTGGAT
AGTTACCGTCTTGCCGCTGGGCAGGTAGATCCATCGCAATACTCTATTAT
AGCTAGAGTGCGTGGCTGTCCGTGAAAGGGGTCAAATGTTGGTCGCTGCT
GGCCACGCTGTTACGATGCTAAATAGTCGATTTCACAGAAATTTACCGGG
AAAGTGACGGGAGGCTTTTTGAGTCCTGCTTGATCCCTGGTGGATGGTTT
CTTCTATAGCAGAACGAAACAGCGACTTGTAGGTGGTGAACCGCAACGTG
TAACAAAGGAACGCAGCACGATCGTTGTAACTGTCACTCCCCCAAGTGCA
ATATAATGTAGTCTGGCCGTGGTTCTTCACCCACTGGGCCCTGTATACGT
GGTTCGGGTGGAATCAGTTTCAAAACGAACAGGAATGGGTGCATTTTGTG
GGCAAATGGTCAAGGCAGATAGTGTCGAGAACGGCACGTTTGGGTTATTC
AAATTTTATGTAAACAACCGTATCTTCCCCGATACAGAGGAATTCTTTAC
AGCAAAGCTTGGTGCGTGTAGCTGAATAAGGCCGTAGGTGCGCGCACTAC
TGCGCGTGTGCTTTGTTTTTCTATGCGTGTCCTCTACGTACTGGTTTGAG
ACTCTCTGGTTGATAGTGTTTCCGTCTTTGGTTTTCTCAAGTTTGCTGGC
CTCGACCATTTGACAGCAGTCAGCACAAACCAGGCCATATCGGTAACCGA
ATCCGTTTTCAAGTGGACACAAAACTTTTTCTTGCCCGATTAGGAAGGGT
ATAATCAATTCTTAGATCTGAATTAGACTCGACCTAAGCGGCATGGTACA
CGTCCAAGTACTTTCCATCTTCCAAGTATGCTTGACAGGGGGGTCTATGG
TTCAAACAGACGGTTTGGAGTTATAGTCCTGGCGAGTCTTGGGTTAGGGT
CGTGAATATACGCCATTTCGTATTTTACTGTGTCGTGTGAACCCAAAAAC
TGGCCTCGACGGATAAGACGAGAACAGGCCTGATTGCCATGTTTTTGAGT
GTGATCGCAGGGTCCAGGTAACAGTTGTGCTGCAGTGTCGAAGTTTGTCA
CCACCCTTTAGAAGACGACATTCGATGACACTCATTTCCATGCATTTCAC
AGGACTCACAGCTGTATCAGGTGCGCCCTAGCTTGAAACCATGTATATGT
TTGTGACCAACTCGTTTGAGCAGCGCGACAATGCCTACCGTTTGAAGTTG
TTCACCGAGCACACCATTTGACTATTTTAACGTTCCTATCTATTTTCGTT
CCGTTTGAATATGTGCTCCATTTCATTTTATTGTCCACGCTGTCCCGAAC
ACGCCGCGCAGGTCATCCTCGTGGACTATCTACCGGGCAACCCTTACAGC
GAGCTGATACAGCCTGTATGGTGCTCATACGCGATGGGAGCGCGTCCGTC
TGTAATGATATCGTCGTCTGGGACCATTTTCTACCAGCAAAGCTGGCTCA
ATACGGACGATCTGGCAGAGGCGATCGACGCCTATTACAGGCAAAACGGA
GAGGGCGTTTGGGACGGGGACAACGACCTAGGGCCCCTAGGAGAGGAGAA
AACAGCTAAACTACTACCGAAGGCCGCAGCCAGAGCAAAGAGGGAAGAAG
CTGAGGGAGTGGTGGGAGGGCGATTGGAGAAGAAAGCGCGGGCGCCATGA
CTTGCGAGGCGGTCACGTTGATTTTGGTCGTTTCTTGCATTTTGGTTCCG
TATGCAGAAAGTATGGTTGCCCACGTTCAGGTGCAGTACCTGGACGTGCT
CGACAGTCTGTACATGTTGACCGGAGTTGAAGCGTTATGTTTTCAGTTGT
CTTGGTGTACTGTGTTTTTACGCTGATTTGGAAGTCGTGAGCTGCCCTTT
CGACCTCGGCAGAGAAGTCACCACCAGTCATCTTGTAGTGCATGATATGT
CTTATTTTTCTACCGTAGTTCCGACCCGTGTGATGCTGAATGCAGTGGTC
GATCCATCTACGTCGTTGATTCATTGAAAGTTTTTTAGGGGGGAGGTACT
CAACGAGGTGTGGTGAATGTTTTGTGTTGAATGTTCTGTGCTTTGTGTTT
TATATCGAGGACATGTGTTAGCTGTTGTTGTTAGTACCATCAAAGTCACC
TAATCGCTGTGTACTGTAAATTATGTGATTTTTCTTCTTGATGAAGCTAT
ATGGATACACATACAAAAATATCTTTGTTTTCCCCGTGGCCCCCCGCATT
GGGGGAGTCAGCGTTTGGTGGCCGGCGTTTCGGGAGCCTACTGCCCCTTG
AACGGCCTGTCGTACTTTATCCACATGGTAGGTGCATACAAGAGAGTCTC
GCGTACCTCTTCACCCCGTTACTGCAGGTGGATGAACTAGCAATTAATTT
TGCCTCCTATTTTTTGCGCAATGTTATACCACTTGGGTCATGGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2582:574..6419+

>mRNA_H-paniculata_contig2582.7041.1 ID=mRNA_H-paniculata_contig2582.7041.1|Name=mRNA_H-paniculata_contig2582.7041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at H-paniculata_contig2582:574..6419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATCACACAGTTTAGTTTGCATCTCCACCCTTCCCCCAAAATGAT
GTGCTCATCGTTGTCTCTGCTGGCGGCGTTCTGCCTTGTAAGCTTGTCGT
TGCCGGTCGCAGATGCCGAGACCCAGCTTCGATCATCGGAGAATCTCGTG
AGCAAATGCTACAACTTTCCCTCAAATAATTTCGATACCAGCAACAACGT
CAAGGCCTCCTATGGCAAAAGCCCTCACTTGGTGCTCGAGACGGGAGATG
CCGCAACAGACTTCACATTGCACGATCTCGATGGCGAGGCATGGAATCTT
GCGGACACGCTTTTGAAGGGGGGCGGAAAGCCGGTGGTGCTGATATGGGG
TATGTCGACTTGCCCGGCGTACCAGGGCTTGGACTCTCAAGGATCAGACT
ACCGATGGACCTATTGGGACGAGAACAATCTGATGGGCATCACACAGTTT
AGTTTGCATCTCCACCCTTCCCCCAAAATGATGTGCTCATCGTTGTCTCT
GCTGGCGGCGTTCTGCCTTGTAAGCTTGTCGTTGCCGGTCGCAGATGCCG
AGACCCAGCTTCGATCATCGGAGAATCTCGTGAGCAAATGCTACAACTTT
CCCTCAAATAATTTCGATACCAGCAACAACGTCAAGGCCTCCTATGGCAA
AAGCCCTCACTTGGTGCTCGAGACGGGAGATGCCGCAACAGACTTCACAT
TGCACGATCTCGATGGCGAGGCATGGAATCTTGCGGACACGCTTTTGAAG
GGGGGCGGAAAGCCGGTGGTGCTGATATGGGGTATGTCGACTTGCCCGGC
GTACCAGGGCTTGGACTCTCAAGGATCAGACTACCGATGGACCTATTGGG
ACGAGAACAATCTGGTAACCTCCCGCACTGACAAGGCCATATTTGTCCAC
ATGTACGGCCCAGAGCCGCACCCCACGGTGCCCGACACAAACTTTGACTC
TGGAAGGCTGCTACCCAACTACTGGAGCCTTACCCGGCAACAATTCACGT
ATGAGGAGCGAGTGGCAGCAGCGATGGCGATTCGGCCATACACTCACCCT
GATGAGGTAACCTCCCGCACTGACAAGGCCATATTTGTCCACATGTACGG
CCCAGAGCCGCACCCCACGGTGCCCGACACAAACTTTGACTCTGGAAGGC
TGCTACCCAACTACTGGAGCCTTACCCGGCAACAATTCACGTATGAGGAG
CGAGTGGCAGCAGCGATGGCGATTCGGCCATACACTCACCCTGATGAGGT
CATCCTCGTGGACTATCTACCGGGCAACCCTTACAGCGAGCTGATACAGC
CTGTATGGTGCTCATACGCGATGGGAGCGCGTCCGTCTGTAATGATATCG
TCGTCTGGGACCATTTTCTACCAGCAAAGCTGGCTCAATACGGACGATCT
GGCAGAGGCGATCGACGCCTATTACAGGCAAAACGGAGAGGGCGTTTGGG
ACGGGGACAACGACCTAGGGCCCCTAGGAGAGGAGAAAACAGCTAAACTA
CTACCGAAGGCCGCAGCCAGAGCAAAGAGGGAAGAAGCTGAGGGAGTGGT
GGGAGGGCGATTGGAGAAGAAAGCGCGGGCGCCATGAGTCATCCTCGTGG
ACTATCTACCGGGCAACCCTTACAGCGAGCTGATACAGCCTGTATGGTGC
TCATACGCGATGGGAGCGCGTCCGTCTGTAATGATATCGTCGTCTGGGAC
CATTTTCTACCAGCAAAGCTGGCTCAATACGGACGATCTGGCAGAGGCGA
TCGACGCCTATTACAGGCAAAACGGAGAGGGCGTTTGGGACGGGGACAAC
GACCTAGGGCCCCTAGGAGAGGAGAAAACAGCTAAACTACTACCGAAGGC
CGCAGCCAGAGCAAAGAGGGAAGAAGCTGAGGGAGTGGTGGGAGGGCGAT
TGGAGAAGAAAGCGCGGGCGCCATGA
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