mRNA_H-paniculata_contig25819.7040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25819.7040.1
Unique NamemRNA_H-paniculata_contig25819.7040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.870e-26
Identity = 59/130 (45.38%), Postives = 82/130 (63.08%), Query Frame = 1 
Query:    7 AFPYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            ++P+RE +G+LM   T  +P+IA+     A++C +P   + R    IL YV+RT+DLGITFG G   G+ M  +AD+ Y       RSVSGG V+ G   ISW SRTQ+     TTEAEYV+LA+++ EV
Sbjct:   69 SWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEV 198
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.450e-24
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct:   99 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 226
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.720e-24
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:   10 FPYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            FP+RE VG+LM   T  +PDIA+ V   A++C +P + +      IL Y  RT+  GI+F  G   G  +  YAD+ +       RSVSGG V  GG A+SW SRTQ+     TTEAEYVAL ++V E+
Sbjct:   97 FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEI 225
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.290e-24
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct:  154 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 281
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.870e-24
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct:  216 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 343
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.190e-23
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    7 AFPYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSE 390
            ++P+RE +G+L+   T  +PDIA+ +   A++C +P   + R    IL YV+RT+DLGITFG G    + M  + D+ Y       RSVSGG V+ GG  ISW SRTQ+     TTEAEYV++A+++ E
Sbjct:  905 SWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKE 1033
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.630e-23
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITF-GGQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct:  752 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFENGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 879
[Close]
BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.190e-23
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct:  106 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 233
[Close]
BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.250e-23
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:   10 FPYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            FP+RE VG+LM   T  +PDIA+ V   A++C +P + +      IL Y  RT+  GI+F  G   G  +  YAD+ +       RSVSGG V  GG A+SW SRTQ+     TTEAEYVAL ++V E+
Sbjct:  239 FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEI 367
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BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.260e-23
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   13 PYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKILQYVLRTADLGITFG-GQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGKAISWHSRTQEVTAAGTTEAEYVALAEMVSEV 393
            P+RE VG+LM   T  +PDIA+ V   A++C +P + + +    IL YV RT+ +GITF  G   G+ M  + D+ Y       RSVSGG V+ GG  ++W SRTQ+     TTEAEYVA+A+++ EV
Sbjct: 1196 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGISMQVFLDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEV 1323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25819.7040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE3.870e-2645.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.450e-2443.75Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRB4_9PHAE4.720e-2444.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE5.290e-2443.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE9.870e-2443.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LC04_9PHAE1.190e-2343.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3H6_9PHAE1.630e-2343.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD11_9PHAE2.190e-2343.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE2.250e-2344.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKY9_9PHAE2.260e-2343.75Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25819contigH-paniculata_contig25819:792..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score102.4
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog221103.XP_007845407.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Integrase core domain
EggNOG OGs22D21@155619,39QKZ@33154,3Q6Q9@4751,3V7VH@5204,3WA55@5338,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.6858544-CDS-H-paniculata_contig25819:791..11871622929767.6858544-CDS-H-paniculata_contig25819:791..1187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25819 792..1187 +
1691481002.4141293-CDS-H-paniculata_contig25819:791..11871691481002.4141293-CDS-H-paniculata_contig25819:791..1187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25819 792..1187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25819.7040.1prot_H-paniculata_contig25819.7040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25819 792..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25819.7040.1

>prot_H-paniculata_contig25819.7040.1 ID=prot_H-paniculata_contig25819.7040.1|Name=mRNA_H-paniculata_contig25819.7040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MRAFPYREAVGALMLATTMMQPDIAHTVCTTAKFCKNPGVAYKRTVAKIL
QYVLRTADLGITFGGQDCGVEMLAYADSGYGMCQDSGRSVSGGAVLLGGK
AISWHSRTQEVTAAGTTEAEYVALAEMVSEV*
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mRNA from alignment at H-paniculata_contig25819:792..1187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25819.7040.1 ID=mRNA_H-paniculata_contig25819.7040.1|Name=mRNA_H-paniculata_contig25819.7040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig25819:792..1187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGCGTTCCCGTACAGGGAGGCAGTGGGGGCGCTCATGTTGGCGAC
GACAATGATGCAACCCGACATCGCACACACCGTTTGCACTACGGCAAAGT
TCTGTAAAAATCCAGGTGTAGCATATAAGAGAACTGTGGCAAAGATTCTG
CAGTACGTACTACGGACGGCGGACCTGGGAATCACCTTCGGCGGACAGGA
CTGTGGGGTCGAAATGTTGGCTTACGCTGACTCGGGCTATGGGATGTGCC
AGGACAGTGGACGCTCGGTCTCCGGCGGAGCAGTACTGCTGGGGGGGAAA
GCGATCAGTTGGCACTCGAGGACTCAGGAGGTGACGGCGGCGGGGACAAC
AGAAGCGGAGTACGTCGCGTTGGCGGAGATGGTGAGCGAAGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig25819:792..1187+

>mRNA_H-paniculata_contig25819.7040.1 ID=mRNA_H-paniculata_contig25819.7040.1|Name=mRNA_H-paniculata_contig25819.7040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig25819:792..1187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGCGTTCCCGTACAGGGAGGCAGTGGGGGCGCTCATGTTGGCGAC
GACAATGATGCAACCCGACATCGCACACACCGTTTGCACTACGGCAAAGT
TCTGTAAAAATCCAGGTGTAGCATATAAGAGAACTGTGGCAAAGATTCTG
CAGTACGTACTACGGACGGCGGACCTGGGAATCACCTTCGGCGGACAGGA
CTGTGGGGTCGAAATGTTGGCTTACGCTGACTCGGGCTATGGGATGTGCC
AGGACAGTGGACGCTCGGTCTCCGGCGGAGCAGTACTGCTGGGGGGGAAA
GCGATCAGTTGGCACTCGAGGACTCAGGAGGTGACGGCGGCGGGGACAAC
AGAAGCGGAGTACGTCGCGTTGGCGGAGATGGTGAGCGAAGTATAAATGC
GGGCGTTCCCGTACAGGGAGGCAGTGGGGGCGCTCATGTTGGCGACGACA
ATGATGCAACCCGACATCGCACACACCGTTTGCACTACGGCAAAGTTCTG
TAAAAATCCAGGTGTAGCATATAAGAGAACTGTGGCAAAGATTCTGCAGT
ACGTACTACGGACGGCGGACCTGGGAATCACCTTCGGCGGACAGGACTGT
GGGGTCGAAATGTTGGCTTACGCTGACTCGGGCTATGGGATGTGCCAGGA
CAGTGGACGCTCGGTCTCCGGCGGAGCAGTACTGCTGGGGGGGAAAGCGA
TCAGTTGGCACTCGAGGACTCAGGAGGTGACGGCGGCGGGGACAACAGAA
GCGGAGTACGTCGCGTTGGCGGAGATGGTGAGCGAAGTATAA
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