mRNA_H-paniculata_contig25812.7037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25812.7037.1
Unique NamemRNA_H-paniculata_contig25812.7037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25812.7037.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.490e-23
Identity = 67/179 (37.43%), Postives = 101/179 (56.42%), Query Frame = 1 
Query:    4 FAEGLRGRSVFTTSQQSDILKASYKKVPVNCDCLRNLGNFKELLAPAAKRIPNITKPPAFRIVRHNWKVYVYFKEYMHSPEWGGMTADGRF---DAFAPPHRVFVGPVVRMRDTLPYKMKTVDENTIKMIKQRYEASHKRLECSYPC-VEEVKAEKRRSVDLLKVGGKELDFNLPLHWL 528
            FA  ++G +VFT    ++  +++YK +PV C  L NL NFK+L+ P  +RIPNITK  AF I +    +    K  +H  +W G +ADG+     A     R+     VR+ +T  Y +KTVDE  I+ I+ R EAS KRL        E+VKA+   S+ +L++ G+  +F+L  +WL
Sbjct:  538 FARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQPVTRRIPNITKFQAFNISKEGTAIVAKVKTKLHHDDWLGFSADGKTVGTGAGFTGWRLMRERDVRLEETPSYLLKTVDEEIIRKIQTRQEASWKRLPAFVSLDPEQVKAQHLDSLRVLRMQGRR-NFDLETNWL 715
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25812.7037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE2.490e-2337.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25812contigH-paniculata_contig25812:2279..3215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size666
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.4637363-CDS-H-paniculata_contig25812:2279..25061622929767.4637363-CDS-H-paniculata_contig25812:2279..2506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25812 2280..2506 -
1691481002.3210442-CDS-H-paniculata_contig25812:2279..25061691481002.3210442-CDS-H-paniculata_contig25812:2279..2506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25812 2280..2506 -
1622929767.4779162-CDS-H-paniculata_contig25812:2779..32151622929767.4779162-CDS-H-paniculata_contig25812:2779..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25812 2780..3215 -
1691481002.3310108-CDS-H-paniculata_contig25812:2779..32151691481002.3310108-CDS-H-paniculata_contig25812:2779..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25812 2780..3215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25812.7037.1prot_H-paniculata_contig25812.7037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25812 2280..3215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25812.7037.1

>prot_H-paniculata_contig25812.7037.1 ID=prot_H-paniculata_contig25812.7037.1|Name=mRNA_H-paniculata_contig25812.7037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
RFAEGLRGRSVFTTSQQSDILKASYKKVPVNCDCLRNLGNFKELLAPAAK
RIPNITKPPAFRIVRHNWKVYVYFKEYMHSPEWGGMTADGRFDAFAPPHR
VFVGPVVRMRDTLPYKMKTVDENTIKMIKQRYEASHKRLECSYPCVEEVK
AEKRRSVDLLKVGGKELDFNLPLHWLREGEDSEMEDSDDSGGMGWGDNDR
GESDDDDDGRGSGDHDSDNSR
back to top

mRNA from alignment at H-paniculata_contig25812:2279..3215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25812.7037.1 ID=mRNA_H-paniculata_contig25812.7037.1|Name=mRNA_H-paniculata_contig25812.7037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig25812:2279..3215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGCAGAAGGACTCAGGGGCCGAAGCGTTTTCACAACGAGCCAGCA
GAGCGACATTCTCAAGGCTTCCTACAAAAAGGTGCCGGTCAACTGCGACT
GCCTGCGGAATCTGGGTAATTTCAAAGAACTCTTGGCACCGGCAGCGAAA
AGAATTCCCAACATTACAAAGCCGCCGGCATTTCGTATCGTTCGCCACAA
CTGGAAGGTGTATGTCTACTTCAAGGAGTACATGCACAGCCCGGAGTGGG
GTGGTATGACTGCTGACGGCCGCTTCGACGCGTTTGCCCCTCCCCACCGA
GTGTTCGTCGGTCCTGTGGTGCGCATGCGGGATACTTTACCCTACAAGAT
GAAAACGGTGGACGAGAATACCATCAAAATGATCAAGCAGCGCTACGAGG
CTTCCCACAAACGCCTGGAATGTAGCTACCCATGCGGTGAGTTCACCAAG
CAAGCTTATCAACTTCTATCCTCGTCTTCAGATGTGCAAGCTGCCTTGTT
TCCTCAAACATGTGGAATGACCGATAATATGCTTCTTATTCGCGGCATTT
TGAAGGTTGAAATACATGCCAAGAACGTGAGTGGTATCGACCACATCAAC
TGACCGCCGCCTGTTTTGTTAAGAAAAAAAAGGCAACCGGCTGTTCTGCT
AAGAAAGCTCGACCACTACCGCCGCATGTTGTTCCCGATCGACGTGGATC
CTAAAAAAGTGGAAGAAGTTAAAGCGGAGAAACGGAGGTCGGTAGATCTG
CTCAAAGTCGGAGGGAAAGAGTTGGACTTCAACCTTCCCTTGCACTGGTT
GCGCGAAGGGGAGGATAGCGAAATGGAAGATAGTGACGATTCTGGTGGGA
TGGGCTGGGGCGACAACGATCGTGGGGAGAGTGATGACGACGATGATGGC
AGGGGGAGTGGGGATCACGATAGCGATAATTCGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25812:2279..3215-

>mRNA_H-paniculata_contig25812.7037.1 ID=mRNA_H-paniculata_contig25812.7037.1|Name=mRNA_H-paniculata_contig25812.7037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig25812:2279..3215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGCAGAAGGACTCAGGGGCCGAAGCGTTTTCACAACGAGCCAGCA
GAGCGACATTCTCAAGGCTTCCTACAAAAAGGTGCCGGTCAACTGCGACT
GCCTGCGGAATCTGGGTAATTTCAAAGAACTCTTGGCACCGGCAGCGAAA
AGAATTCCCAACATTACAAAGCCGCCGGCATTTCGTATCGTTCGCCACAA
CTGGAAGGTGTATGTCTACTTCAAGGAGTACATGCACAGCCCGGAGTGGG
GTGGTATGACTGCTGACGGCCGCTTCGACGCGTTTGCCCCTCCCCACCGA
GTGTTCGTCGGTCCTGTGGTGCGCATGCGGGATACTTTACCCTACAAGAT
GAAAACGGTGGACGAGAATACCATCAAAATGATCAAGCAGCGCTACGAGG
CTTCCCACAAACGCCTGGAATGTAGCTACCCATGCGAGGTTTGCAGAAGG
ACTCAGGGGCCGAAGCGTTTTCACAACGAGCCAGCAGAGCGACATTCTCA
AGGCTTCCTACAAAAAGGTGCCGGTCAACTGCGACTGCCTGCGGAATCTG
GGTAATTTCAAAGAACTCTTGGCACCGGCAGCGAAAAGAATTCCCAACAT
TACAAAGCCGCCGGCATTTCGTATCGTTCGCCACAACTGGAAGGTGTATG
TCTACTTCAAGGAGTACATGCACAGCCCGGAGTGGGGTGGTATGACTGCT
GACGGCCGCTTCGACGCGTTTGCCCCTCCCCACCGAGTGTTCGTCGGTCC
TGTGGTGCGCATGCGGGATACTTTACCCTACAAGATGAAAACGGTGGACG
AGAATACCATCAAAATGATCAAGCAGCGCTACGAGGCTTCCCACAAACGC
CTGGAATGTAGCTACCCATGCGTGGAAGAAGTTAAAGCGGAGAAACGGAG
GTCGGTAGATCTGCTCAAAGTCGGAGGGAAAGAGTTGGACTTCAACCTTC
CCTTGCACTGGTTGCGCGAAGGGGAGGATAGCGAAATGGAAGATAGTGAC
GATTCTGGTGGGATGGGCTGGGGCGACAACGATCGTGGGGAGAGTGATGA
CGACGATGATGGCAGGGGGAGTGGGGATCACGATAGCGATAATTCGAGGT
GGAAGAAGTTAAAGCGGAGAAACGGAGGTCGGTAGATCTGCTCAAAGTCG
GAGGGAAAGAGTTGGACTTCAACCTTCCCTTGCACTGGTTGCGCGAAGGG
GAGGATAGCGAAATGGAAGATAGTGACGATTCTGGTGGGATGGGCTGGGG
CGACAACGATCGTGGGGAGAGTGATGACGACGATGATGGCAGGGGGAGTG
GGGATCACGATAGCGATAATTCGAGG
back to top