mRNA_H-paniculata_contig2581.7035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2581.7035.1
Unique NamemRNA_H-paniculata_contig2581.7035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 1.760e-136
Identity = 208/238 (87.39%), Postives = 220/238 (92.44%), Query Frame = 1 
Query:   88 LTGTISAGLRTPAITTTLGCEAHSYRR---AKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKK 792
            +TGT+S GLRTP  T+ LG EA +YRR    KSGAASTVMMPIGVPKVAYRVPGA TADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSE+S KPIYLYVNCPGGSVIAGLA++DTMQHIRSEVVTINVGLAASMASFILAAG KGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDL+RDNFMSA  A +YGLVD +I+L KK
Sbjct:    1 MTGTMSPGLRTPGTTSVLGREARTYRRLSTTKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 238
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 384 bits (987), Expect = 1.070e-128
Identity = 197/253 (77.87%), Postives = 225/253 (88.93%), Query Frame = 1 
Query:   34 LFLLAGQGAAFFAGPSTFLTGTISAGLRTPAITTTLGCEAHSYRRAKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKK 792
            L +L G  A      ST+L+G++SAGLR PA+ ++ G    SY+R  SGAASTVMMPIGVPKVAYRVPGA +ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSE+S KPIY+YVNCPGGSVIAGLA+YDTMQHI+SEV+TIN+G+AASMASF+LAAG KGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYA M+G+TQE++T  L+RDNFMSA  A E+GL+DQII+L+K+
Sbjct:   12 LAMLTGVAAFSSGAHSTWLSGSMSAGLRMPAVPSSTGLSKASYQR--SGAASTVMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAQMSGRTQEEVTRALDRDNFMSAQAALEFGLIDQIIELKKE 262
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA)

HSP 1 Score: 359 bits (922), Expect = 5.990e-119
Identity = 179/245 (73.06%), Postives = 212/245 (86.53%), Query Frame = 1 
Query:   79 STFLTGTISAGLRTPAITTTLGCEAHSYRRAKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKKSNPE*IL 813
            S F TGT++AGL  P+          +  R  SGA S VMMPIGVPKVAYRVPG+ +ADW+DIYNRLYRERIIF+GQEIDDE ANQIIGV+LYLDSE+  KPIY+Y+NCPGGSVIAG+A+YDTMQHI+++VVTINVG++ASMASF+LAAG KGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MY+MMTGQTQEQI  DL+RDNFMSAA+A+EYGLVDQ+I +++   P+ +L
Sbjct:   22 SRFTTGTLNAGLYAPSA---------AGVRGTSGAGSMVMMPIGVPKVAYRVPGSGSADWIDIYNRLYRERIIFVGQEIDDEFANQIIGVLLYLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQEQIVKDLDRDNFMSAAQAQEYGLVDQLIDVQEMPQPDKLL 257
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: D7FX14_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX14_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 3.390e-118
Identity = 195/267 (73.03%), Postives = 210/267 (78.65%), Query Frame = 1 
Query:    1 MVQSLCSLVGALFLLAGQGAAFFAGPSTFLTGTISAGLRTPAITTTLGCEAHSYRR---AKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKK 792
            M +  C++VGAL  L GQ  AFF  PS F+TGT+S GLRTP  T+ LG EA +YRR   AKSGAASTVMMPIGVPKVAYRVPGA TADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSE+S KPIYLYVNCPGGSVIAGLA++DTMQHIRSEVVTINVGLAASMASFILAAG K                            VEATQIM IRDNIVRMYAMMTGQTQEQITIDL+RDNFMSA  A +YGLVD +I+L KK
Sbjct:    1 MARGFCAVVGAL--LVGQATAFFGSPSAFMTGTMSPGLRTPGATSALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK----------------------------VEATQIMHIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 237
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC)

HSP 1 Score: 349 bits (895), Expect = 3.380e-114
Identity = 169/206 (82.04%), Postives = 190/206 (92.23%), Query Frame = 1 
Query:  169 AKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLR 786
            A SG  S  MMPIGVPKVAYR+PG+  ADW+DIYNRLYRERIIFLGQEIDDE ANQIIGVMLYLDSE+S KPIY+Y+NCPGGSVIAGLA+YDTMQHI+SEVVTINVGL+ASMASF+LAAGTKGKR ALPHSRVMIHQPMGGAQGQAEDIKVEA QI+RI+DN+V+MY+MMTGQT+EQI  DL+RDNFMSA +AKEYGL+D +I L+
Sbjct:   82 ASSGVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDLK 287
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA)

HSP 1 Score: 345 bits (885), Expect = 2.940e-113
Identity = 168/203 (82.76%), Postives = 189/203 (93.10%), Query Frame = 1 
Query:  175 SGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQL 783
            +GA   VMMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSE+S KPIYLY+NCPGGSVIAG+A++DTM HI+S+VVTIN+GLAASMASF+LA G KG RMALP+SRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMYA MTGQTQEQI IDL+RDNFMSA +A EYGLVDQ+I+L
Sbjct:   58 AGAGGLVMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSSKPIYLYINCPGGSVIAGMALFDTMNHIKSKVVTINLGLAASMASFLLAGGEKGSRMALPNSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYAQMTGQTQEQIIIDLDRDNFMSAQQAMEYGLVDQVIEL 260
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BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S2S0Z5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Z5_9STRA)

HSP 1 Score: 342 bits (878), Expect = 3.710e-112
Identity = 166/208 (79.81%), Postives = 190/208 (91.35%), Query Frame = 1 
Query:  169 AKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKK 792
            A+ GA   VMMPIGVPKVAYR+PG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSE+S+KPIYLY+NCPGGSVIAG+A++DTM HI+S VVTIN+GL+ASMASF+LAAG +G RMALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMY+ MTGQTQEQI  DL+RDNFMSA EA EYGL+D+II+   K
Sbjct:   60 ARQGAGGLVMMPIGVPKVAYRIPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSKKPIYLYINCPGGSVIAGMALFDTMNHIKSPVVTINLGLSASMASFLLAAGKRGSRMALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYSQMTGQTQEQIIRDLDRDNFMSAQEALEYGLIDKIIETTDK 267
[Close]
BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA)

HSP 1 Score: 342 bits (877), Expect = 4.890e-112
Identity = 163/203 (80.30%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:  196 MMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKKSNPE 804
            MMPIGVPKVAYRVPG+Q+ADWVDIYNRLYRERIIFLG EIDDELANQIIGVMLYLDSE+S KPIYLY+NCPGGSVI+GLA++D MQHI+SEV+TIN+GLAASMASFI+AAG+KGKR+ALP SR+MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MY+M TGQTQ+QIT DL+RDNFMSA EA EYGL+D++++  K+++ +
Sbjct:   62 MMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSEDSSKPIYLYINCPGGSVISGLAIFDCMQHIKSEVITINLGLAASMASFIMAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMFTGQTQDQITRDLDRDNFMSAQEAVEYGLIDRVLEYSKETDTQ 264
[Close]
BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S2N232_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N232_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.090e-111
Identity = 166/218 (76.15%), Postives = 195/218 (89.45%), Query Frame = 1 
Query:  151 AHSYRRAKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKKSNPE 804
            A S  RA+  +    MMPIGVPKVAYRVPG+Q+ADWVDIYNRLYRERIIF+G EIDDELANQIIGV+LYLDSE+  KPIYLY+NCPGGSVI+GLA+YD MQHI+SEV+TIN+GLAASMASFILAAG+KGKR+ALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYAMMTGQTQ+QI  DL+RDNF+SA EA EYGLVD+++++  +++ +
Sbjct:   37 ARSGVRARGCSRDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFIGSEIDDELANQIIGVLLYLDSEDQDKPIYLYINCPGGSVISGLAIYDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYAMMTGQTQDQIISDLDRDNFLSAQEAMEYGLVDRVLEIDTENDTQ 254
[Close]
BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Match: A0A7S2NSD7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSD7_9STRA)

HSP 1 Score: 341 bits (874), Expect = 2.760e-111
Identity = 165/203 (81.28%), Postives = 187/203 (92.12%), Query Frame = 1 
Query:  196 MMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTMQHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAKEYGLVDQIIQLRKKSNPE 804
            MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLD E++ KPIYLY+NCPGGSVIAGLA+YD M HI SEVVTINVGLAASMASFILA G+KGKR+ALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDNIV+MY+MM+GQTQEQIT DL+RDNFMSA +A EYGLVD+++++ ++ N +
Sbjct:   82 MMPIGVPKVAYRVPGSNSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDQEDNTKPIYLYINCPGGSVIAGLAIYDCMNHIASEVVTINVGLAASMASFILAGGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNIVKMYSMMSGQTQEQITTDLDRDNFMSAQQALEYGLVDRVVEMPREENTQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2581.7035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP1_9PHAE1.760e-13687.39ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z885_9STRA1.070e-12877.87ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1TU42_9STRA5.990e-11973.06ATP-dependent Clp protease proteolytic subunit n=2... [more]
D7FX14_ECTSI3.390e-11873.03ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A0G4F8U0_VITBC3.380e-11482.04ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2CF89_9STRA2.940e-11382.76ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2S0Z5_9STRA3.710e-11279.81ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0KYD1_9STRA4.890e-11280.30ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2N232_9STRA1.090e-11176.15ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2NSD7_9STRA2.760e-11181.28ATP-dependent Clp protease proteolytic subunit n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2581contigH-paniculata_contig2581:63..5654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue3.3e-88
Seed eggNOG ortholog2850.Phatr14387
Preferred nameclpP
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009536,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Clp protease
EggNOG OGs2XB1N@2836,COG0740@1,KOG0840@2759
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit
Ec32 orthologEc-10_003920.1
EC3.4.21.92
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons6
Model size1576
Cds size807
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.170907-UTR-H-paniculata_contig2581:62..8311622929767.170907-UTR-H-paniculata_contig2581:62..831Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2581 63..831 -
1691481002.1525958-UTR-H-paniculata_contig2581:62..8311691481002.1525958-UTR-H-paniculata_contig2581:62..831Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2581 63..831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.1913574-CDS-H-paniculata_contig2581:831..9301622929767.1913574-CDS-H-paniculata_contig2581:831..930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 832..930 -
1691481002.165928-CDS-H-paniculata_contig2581:831..9301691481002.165928-CDS-H-paniculata_contig2581:831..930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 832..930 -
1622929767.2037277-CDS-H-paniculata_contig2581:1931..20211622929767.2037277-CDS-H-paniculata_contig2581:1931..2021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 1932..2021 -
1691481002.1794004-CDS-H-paniculata_contig2581:1931..20211691481002.1794004-CDS-H-paniculata_contig2581:1931..2021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 1932..2021 -
1622929767.21848-CDS-H-paniculata_contig2581:3744..38281622929767.21848-CDS-H-paniculata_contig2581:3744..3828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 3745..3828 -
1691481002.1877341-CDS-H-paniculata_contig2581:3744..38281691481002.1877341-CDS-H-paniculata_contig2581:3744..3828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 3745..3828 -
1622929767.2327833-CDS-H-paniculata_contig2581:4161..43411622929767.2327833-CDS-H-paniculata_contig2581:4161..4341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 4162..4341 -
1691481002.1964338-CDS-H-paniculata_contig2581:4161..43411691481002.1964338-CDS-H-paniculata_contig2581:4161..4341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 4162..4341 -
1622929767.2479408-CDS-H-paniculata_contig2581:5119..52541622929767.2479408-CDS-H-paniculata_contig2581:5119..5254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 5120..5254 -
1691481002.2063143-CDS-H-paniculata_contig2581:5119..52541691481002.2063143-CDS-H-paniculata_contig2581:5119..5254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 5120..5254 -
1622929767.2592301-CDS-H-paniculata_contig2581:5435..56541622929767.2592301-CDS-H-paniculata_contig2581:5435..5654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 5436..5654 -
1691481002.2291048-CDS-H-paniculata_contig2581:5435..56541691481002.2291048-CDS-H-paniculata_contig2581:5435..5654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2581 5436..5654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2581.7035.1prot_H-paniculata_contig2581.7035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2581 832..5654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2581.7035.1

>prot_H-paniculata_contig2581.7035.1 ID=prot_H-paniculata_contig2581.7035.1|Name=mRNA_H-paniculata_contig2581.7035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MVQSLCSLVGALFLLAGQGAAFFAGPSTFLTGTISAGLRTPAITTTLGCE
AHSYRRAKSGAASTVMMPIGVPKVAYRVPGAQTADWVDIYNRLYRERIIF
LGQEIDDELANQIIGVMLYLDSENSQKPIYLYVNCPGGSVIAGLAMYDTM
QHIRSEVVTINVGLAASMASFILAAGTKGKRMALPHSRVMIHQPMGGAQG
QAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLNRDNFMSAAEAK
EYGLVDQIIQLRKKSNPE*
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mRNA from alignment at H-paniculata_contig2581:63..5654-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2581.7035.1 ID=mRNA_H-paniculata_contig2581.7035.1|Name=mRNA_H-paniculata_contig2581.7035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5592bp|location=Sequence derived from alignment at H-paniculata_contig2581:63..5654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCAATCATTATGTTCGTTAGTCGGGGCTCTATTTCTCTTGGCGGG
GCAAGGGGCGGCCTTTTTTGCGGGGCCGTCCACGTTCTTGACCGGAACTA
TCTCGGCGGGCCTGCGAACGCCGGCAATCACCACGACTCTGGGCTGTGAG
GCGCACTCGTACCGACGAGCGAAGTCCGGGGCCGCGTCTACCGTGATGAT
GCCCATAGGAGTGCCAAAGGTGTGATTTGTGGAGGATCCGCTGATAAGGT
CTCGTTGTCACCATGATGATAGATCTCAGGACTAGCTTCGCTTCACCTCC
CTGGCTTCGTAATATCCTTTAGTGTATTTGTTGAAGGACAATCTCAACTT
GAGTGTACTCAATTATCGAATGTTTCGACTCTTATGTTCAAATACGTCAG
GTGGCTTACCGAGTGCCGGGCGCGCAGACGGCTGACTGGGTGGACATATA
CAACCGACTCTACCGCGAGCGCATCATCTTCCTGGGGCAGGAGATCGACG
ACGAGCTGGCCAATCAGATCATCGGCGTTATGCTGGTATGGACGTGGGAG
CTATAGAGCGACTCGCCTTTTTGGTTTGAACGAGCAGAGTACGTGTTCGT
TCTATCAACGAAAAGCAATCCTGCCACCCGCCTCGCCACCCCGTAACCCC
ACGTCGCCTCCTCCGCGGCTGGTCATATTATTAAACATATTTTGGGTGAA
GGGACTGCATAAACGGCGGAGTACATTTTTTGCGTACATGGGAGCTGCTT
GTGATTTTGGATGTTGCAACAACCACAATACAGTCCTATGCACTGACCTT
GTTTTGTATCCCTATTTCACGTTTGTCACAATCTCCGTGAGAATTTTTTC
TCACCTCGCGCTTCGAAATGGTGCCATGGTTGTTGATGAGTCGCCACCTC
TTGTTGCGCTCGAGCAAATATCGTCCGTGCTGAGCTTCTTTTTGGTGTAG
ACGTCTAAATCTGCCAATGCCGTCCAAATCATAACTGGTTATATGTTGAG
TAGTAGGTGCAACTTGAAAAAACAAGCTGTGCATTCCTCATCACGATGAC
CCCGCCCCCGCCCCCTCTCGTTTTCGCTTCCTGGCGCTGATAACTACAGT
ATACTCATTATTCACAGCTTTGCAATATAGTATGGGCTACACAACCTGAG
CAAAAACAGTATGCAACTATGAAAAACACGACACAAACTGACTCACACAG
TGACTGTTTTTGTTGTCGCACATGTGCGCTTTTATTGTTTTTACACCGCG
TTGATACAAGCACAAACCCCTCGTACATCTTCCCTTCTCTTTTTGCCCTG
CTCACGAACGCAGTACCTGGACTCTGAAAATTCTCAGAAGCCCATCTATC
TGTATGTTAACTGCCCCGGAGGGTCAGTCATCGCTGGCCTGGCCATGTAC
GACACCATGCAGCACATCCGATCCGAGGTTGTGACAATAAACGTGGGCCT
TGCTGCGTCCATGGCGTCGTTCATTCTGGCGGCGGGGACTAAGGTAAGAG
GGCGTCTCACAGTCCATTTTGTATTTCTCTTCATTCAGCAATATCGATGC
TTCACATTTTTCTACTTGTTCAAATTAAGATATTTTATCTCTGTAAATTT
TGCTGGATCCCAAACGTTACACACACTCGACCAAAAGTGGTGGTAAAACA
CTTCTTTGTGGGTGATGATTTTCTAGTCGTCATGCTGCCCGCGGCCATAC
GGAGAGTGTTACTGTTGTCGAACAATAGTTTTTTCAATATTTTTACTTTA
GCTTCGTGTCCTAATTTGCTTCTCTCTTGTTTGTCTTGTCATTTCTCGTC
GTCGTGGTATTGCATGACGGAAACAGGGGAAGCGGATGGCGCTGCCGCAC
TCTCGGGTGATGATTCACCAGCCGATGGGAGGAGCGCAGGGTCAAGCAGA
AGACATCAAGGTGCGAAAAGTAGAGAAAGGAGGGGTTGTCGTACATACCA
TGGAAGTCCGAGGTATCGCACCGTGGTACGAGCGTTTTTCAAACGCGACC
AAGTATCTCGAGAACGGAGACATTATCACGAAGTCGGAAGAAGCTGTCAA
TTAAGAGATACATCTTCGCGAGACGTTTCCAACGACACACTTTTCCTCCT
CAGGAGCTAATGCCGTAGTTCTTAAGATAATCACGTTTAGAAAATGTTCG
CGTCCCCCGAATTTTATGGCAGTCGGGTCGCACTTGTCTGGTGTCACCTC
TGGCTTTGCACCGAGGTGTGTTGGCGTGTACGACTTGTATTGTGACTTAC
CAGGTATGTATGTCGCACTCGGGTGGAGATTTTCTCGAGAAGCAAGAAAC
TATCCCATGACACGTCGAGATAATATGTTTTGTGATATACCAGATCTTGA
GATTGATCGTTCGCACGATGCAACGTCCGGTGTCTATGAAAGCCCCACAG
GGTTCGCGACAAAATTATGTTCAAACGATGACATTTTTCAGGTGGTCAAA
CCATTCAAACTACTGTAACCGTCGCTCATGCGCGACTGGTAAATCTCGGC
TTCCAACAGCAACTATCATTTCGCCCTGTGATATCGCACCATGTACGAAG
CGAAATTAAATCCGGCCGTGACGGATCGCAAGGTGTGATATTCAAGGGGT
GTGCGATGGAGATGAATGTGTTCACAACACATAGATAGAAATTTCCTCAA
TAGGTATTTGTAGAGGTTGCCGCTGTACGTACAAACAACACACGAAATCT
TGCCGGGGACAGGAATATCATTGAGCTGCTGTAGATTGTGCTATAAAAAC
ATTGTGCTTTATTTGATATGCCTCGATATAACACTGATGCATAGCAGGGC
AGTACTAGAGCAATTGCCGCGTTGAGTTTGTTTCGTTCAGCTCTGGTTTG
TCGTGTGCTTCTTTCATGGTCAGAACCCCAAGGATTCAGTAAAAAATCTC
TGCACTCTGAAAGAGGCTACATGAATACCGGTAATTCATCTCATTTTCAG
CACGCAGCGAAAGGGCAAATACCAGTAATACAAAAGTACCGATTCAACCA
TAACCTACAGTTACAGAGGAGACGCCCACATCAGAAAACCAATTGGAAAC
AGATTATCATGCAGACCCTCACCCGTATTATTGCTTGCACCCTCCCCTTG
TTTTCGCACCCCGCTACGATATCAACGCATGAGAGTGCGATATCAAAGAG
TGTTGCGATATTCTCTCTCTCATTCTTTTTCTACTCTCATTAGAATGCGG
GGGGGAAATGAGCAATGTCTGCTTCTCACCAAATGCTCAACATTGTATTT
TGCTCGCGAAGATCCTGCTTCGGGACAGGGGCAAATTATGCCTGCTTTAT
TTATGAATATGGAACATGAAACCTGATCATTCCTGTGCGAGTATTCATAG
TCGGTTTCCGGATAAAACAATGTTCATTTGCCCTTATGTGGTGTTTTTTT
TCTTCGCGTCAATATCTGTATTCAATTCAACAAAGGTAGCTATTACAGCA
ACCTCTAAAGTATGTGACGGTTGCGGGCAATGTGGCGAGTTGTGTTCGAG
GTGTTTTTGTGTTTTTTCCTCCAGGATGTCGTGCCCCCGTTCTTGTGCGC
TACTGTTTGATGAAATTTTCCCCATTCCTCCGCCTGTATCTCTGTGTGCA
TTTCCTATTATTTTTTAACGCGAAAAAATGCAGGTGGAGGCGACGCAAAT
CATGCGAATCCGCGACAACATCGTGCGCATGTACGCCATGATGACAGGAC
AGACACAAGAACAGATCACTATCGTGAGTTGGTCGAATCGCTTCGCTAGC
TGTAACCCCGTCGTGATTTTGTGTTTCCCCCTGCTCGTTTTTTTCTAGTT
TCTTCGCACACACGGAATTTGTTGAACTCTCGGTTTTTCAGCATGTTTTT
TATTTTACACATGTTCTTTGGTGTCGCACGAAATTCTACTTGGCTTGGTT
GATAAATTGTATATTTTCGCCCAAACTTTACGGTTACGGTAGTTGAATAA
TTCACATGAATGTAGTAAGTAGAGTCGAAATATGCGCCGGGCCGGATATA
TTTCGTTCAAAATCGCATTTCCGCTGGCAGGCGGGGGGGGGGGAGAGTTC
ATGACGTTTTTTCCGCCGTACAGCGCAAGAAAACAACGCAAAATGATGCG
AAAAAACCGGGGGGTTTTCCTGCGCTCTACTTTTCATGTTCAATATGAAC
TCTTGTCCAGCAGGTGAACGTTGCAGATGTGTAAGAAAGGACTTGGCATA
GAGCTTGTTCATAGTGTTGGTGTCAATGCAATGTGTTTTGCTGCGATGTC
GATGGAGCACCGCCCACTTCTTTCGTTGGCGTGGGTTGCTGGCATTCAGC
CTATCTGCCTGCCTCTTTATACCCTGCGATTGTGTTGGTACATATTAGCA
CTCTCTTTCAAGTAGTTTGTCGTGTGTTTTCCAGTCTTGCGTGTGATACT
TGATCGTGGCACCCAAATGGCTCGTGCCATATTTCGAAATAATGCATTTG
GGACAAGCATGTCTTCTGTCCCCAGTGTCGAGCAAGGTGTGCTTCATGTC
TTTTATGTGTTGTAGGTTGTGTTGGCCTTGCACCGTCGAAGTGAAATCAG
TGCATCAGACACCGCCGGTTTCGGCGAGGTGATACCTATGGGTGAATGAA
ATCTTGTAACTTTCAACTACGATATTTTTTGCCATGTGTCCACTGAATGG
GTTTACTGCGTATTATTTGAACTTGACAAGGGTGCTCACGTCTCCCGTTC
TCATCTTGACCGAATCTCTGGCAGGATTTAAACCGCGACAACTTCATGTC
GGCGGCGGAGGCGAAGGAGTACGGCCTCGTGGACCAAATAATCCAGCTCC
GCAAGAAGTCGAACCCAGAATAGATTTTAGCTGATCGATTCAAGTATATA
TTCAGGGTTCTCGCTCTCTCGGTCGATCAAGTACTGTTATGGTGCCTGTT
TTGGAGGGGGCTGTGCGTGGAGAATAATCAGGTCAAACTGTGGTTTGCTG
TGCGATACAAGTCGGGGGGAACAGACAGGTTGCGCATTTATTTGTCGAGA
TTTCCCAACTGTGTAATATGTCCCCTTCGCCAATCAGGTGTAGCAGGTGT
CGAAGCTTTGTACGGCTCTTTCAGCACTGCAGTTTTACTGTTGTTGCTGT
GGAGAAGGTGTTGGCGTGAATAGAACGATCCCAAAATGAAGGGGTCTGTG
TGGCTTGTCTGATAAACAACCGTGTTTTCCTTTCAGGTCAGATGTCGTGG
TAGTTGCACATCCGGTTGTTCGTGGACAATGGTTTCGGGAATGATCGTTA
TCATGTGCACACGACGGTTATGTACAAAAGGTGATACGTTTGGGGAAATA
TAACTGAGGGTGAACACTGAGGAAGAGAGGTACTCGTAATTTTTCATCGT
GTGGTATTTTTCTCTTCAAAAACCATCACTTTTTTTTTTTTTTCTCGGAC
AGTTATTACTATCATCAATTCTTCCATGCCTCTGCACCTAACCAAAGAAT
GAGTACATTTTATTGTACAGAACAGATGATTTATTACTATGCTGGGTGGA
TGTTTCCTGTTTTGGCTGAAAGGAGAAAGAGAGGAGATTGTGTTCGCTCT
ACAATCGCCGACTATTCTATCAACCTTTTGAACTTTGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2581:63..5654-

>mRNA_H-paniculata_contig2581.7035.1 ID=mRNA_H-paniculata_contig2581.7035.1|Name=mRNA_H-paniculata_contig2581.7035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig2581:63..5654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCAATCATTATGTTCGTTAGTCGGGGCTCTATTTCTCTTGGCGGG
GCAAGGGGCGGCCTTTTTTGCGGGGCCGTCCACGTTCTTGACCGGAACTA
TCTCGGCGGGCCTGCGAACGCCGGCAATCACCACGACTCTGGGCTGTGAG
GCGCACTCGTACCGACGAGCGAAGTCCGGGGCCGCGTCTACCGTGATGAT
GCCCATAGGAGTGCCAAAGATGGTCCAATCATTATGTTCGTTAGTCGGGG
CTCTATTTCTCTTGGCGGGGCAAGGGGCGGCCTTTTTTGCGGGGCCGTCC
ACGTTCTTGACCGGAACTATCTCGGCGGGCCTGCGAACGCCGGCAATCAC
CACGACTCTGGGCTGTGAGGCGCACTCGTACCGACGAGCGAAGTCCGGGG
CCGCGTCTACCGTGATGATGCCCATAGGAGTGCCAAAGGTGGCTTACCGA
GTGCCGGGCGCGCAGACGGCTGACTGGGTGGACATATACAACCGACTCTA
CCGCGAGCGCATCATCTTCCTGGGGCAGGAGATCGACGACGAGCTGGCCA
ATCAGATCATCGGCGTTATGCTGGTGGCTTACCGAGTGCCGGGCGCGCAG
ACGGCTGACTGGGTGGACATATACAACCGACTCTACCGCGAGCGCATCAT
CTTCCTGGGGCAGGAGATCGACGACGAGCTGGCCAATCAGATCATCGGCG
TTATGCTGTACCTGGACTCTGAAAATTCTCAGAAGCCCATCTATCTGTAT
GTTAACTGCCCCGGAGGGTCAGTCATCGCTGGCCTGGCCATGTACGACAC
CATGCAGCACATCCGATCCGAGGTTGTGACAATAAACGTGGGCCTTGCTG
CGTCCATGGCGTCGTTCATTCTGGCGGCGGGGACTAAGTACCTGGACTCT
GAAAATTCTCAGAAGCCCATCTATCTGTATGTTAACTGCCCCGGAGGGTC
AGTCATCGCTGGCCTGGCCATGTACGACACCATGCAGCACATCCGATCCG
AGGTTGTGACAATAAACGTGGGCCTTGCTGCGTCCATGGCGTCGTTCATT
CTGGCGGCGGGGACTAAGGGGAAGCGGATGGCGCTGCCGCACTCTCGGGT
GATGATTCACCAGCCGATGGGAGGAGCGCAGGGTCAAGCAGAAGACATCA
AGGGGAAGCGGATGGCGCTGCCGCACTCTCGGGTGATGATTCACCAGCCG
ATGGGAGGAGCGCAGGGTCAAGCAGAAGACATCAAGGTGGAGGCGACGCA
AATCATGCGAATCCGCGACAACATCGTGCGCATGTACGCCATGATGACAG
GACAGACACAAGAACAGATCACTATCGTGGAGGCGACGCAAATCATGCGA
ATCCGCGACAACATCGTGCGCATGTACGCCATGATGACAGGACAGACACA
AGAACAGATCACTATCGATTTAAACCGCGACAACTTCATGTCGGCGGCGG
AGGCGAAGGAGTACGGCCTCGTGGACCAAATAATCCAGCTCCGCAAGAAG
TCGAACCCAGAATAGGATTTAAACCGCGACAACTTCATGTCGGCGGCGGA
GGCGAAGGAGTACGGCCTCGTGGACCAAATAATCCAGCTCCGCAAGAAGT
CGAACCCAGAATAG
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