prot_H-paniculata_contig258.7031.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig258.7031.1
Unique Nameprot_H-paniculata_contig258.7031.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length280
Homology
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BLAST of mRNA_H-paniculata_contig258.7031.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.780e-33
Identity = 84/171 (49.12%), Postives = 101/171 (59.06%), Query Frame = 0 
Query:    1 MAEGFEPLELTTGIQLSDVQPGQGKRLWLFRVPRHITTQRLEGATIKLPHTGNTEGKVLGRLGS---NESNKLDGERKETSAGELVFTSMDSAESSTFRPLLTSDDQGWLAAGGPFAGQVNVSVVPPPLPEAPKIAD-DGTLSMLVEPYRGRPQLTGMRVRSKLVGAGTEY 167
            MAEGF   +  T + LS+VQ   GKRLWL RVPRHI T RLEG  +KLP  G  EGKVLGR      +E    D E       +L   + D AE+  FR L ++ + G LAA  PF GQVNVSV  P +  +  +AD D  +   VEPY+GRPQL GMRVR K   AG+EY
Sbjct:    1 MAEGFTAADYVTSLPLSEVQ---GKRLWLLRVPRHIDTSRLEGVKVKLPRKGR-EGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDAS--VADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEY 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig258.7031.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI1.780e-3349.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013240DNA-directed RNA polymerase I, subunit RPA34.5PFAMPF08208RNA_polI_A34coord: 23..274
e-value: 2.8E-18
score: 66.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig258contigH-paniculata_contig258:40478..43587 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig258.7031.1mRNA_H-paniculata_contig258.7031.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig258 40361..43637 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig258.7031.1 ID=prot_H-paniculata_contig258.7031.1|Name=mRNA_H-paniculata_contig258.7031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MAEGFEPLELTTGIQLSDVQPGQGKRLWLFRVPRHITTQRLEGATIKLPH
TGNTEGKVLGRLGSNESNKLDGERKETSAGELVFTSMDSAESSTFRPLLT
SDDQGWLAAGGPFAGQVNVSVVPPPLPEAPKIADDGTLSMLVEPYRGRPQ
LTGMRVRSKLVGAGTEYPRRNQSNTKRRPLRHAPDALSKEGAASSVEEGV
GQDGTSPETTAQNIDLKAGQMDMRSAPGTPGDSSESKKKHKKKRLAVAAT
AASGEEGERQVPSTTVKAKKSKKRDRRSM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013240DNA-dir_RNA_pol1_su_RPA34