mRNA_H-paniculata_contig258.7031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig258.7031.1
Unique NamemRNA_H-paniculata_contig258.7031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig258.7031.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.000e-32
Identity = 84/171 (49.12%), Postives = 101/171 (59.06%), Query Frame = 3 
Query:   51 MAEGFEPLELTTGIQLSDVQPGQGKRLWLFRVPRHITTQRLEGATIKLPHTGNTEGKVLGRLGS---NESNKLDGERKETSAGELVFTSMDSAESSTFRPLLTSDDQGWLAAGGPFAGQVNVSVVPPPLPEAPKIAD-DGTLSMLVEPYRGRPQLTGMRVRSKLVGAGTEY 551
            MAEGF   +  T + LS+VQ   GKRLWL RVPRHI T RLEG  +KLP  G  EGKVLGR      +E    D E       +L   + D AE+  FR L ++ + G LAA  PF GQVNVSV  P +  +  +AD D  +   VEPY+GRPQL GMRVR K   AG+EY
Sbjct:    1 MAEGFTAADYVTSLPLSEVQ---GKRLWLLRVPRHIDTSRLEGVKVKLPRKGR-EGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDAS--VADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEY 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig258.7031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI1.000e-3249.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig258contigH-paniculata_contig258:40361..43637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase I, subunit RPA34.5
Ec32 orthologEc-14_000360.1
Exons4
Model size1007
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig258.7031.1prot_H-paniculata_contig258.7031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig258 40478..43587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.736477-UTR-H-paniculata_contig258:40360..404771622929766.736477-UTR-H-paniculata_contig258:40360..40477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 40361..40477 -
1691481001.941145-UTR-H-paniculata_contig258:40360..404771691481001.941145-UTR-H-paniculata_contig258:40360..40477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 40361..40477 -
1622929766.80938-UTR-H-paniculata_contig258:43587..436371622929766.80938-UTR-H-paniculata_contig258:43587..43637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 43588..43637 -
1691481002.0020294-UTR-H-paniculata_contig258:43587..436371691481002.0020294-UTR-H-paniculata_contig258:43587..43637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 43588..43637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.749699-CDS-H-paniculata_contig258:40477..408211622929766.749699-CDS-H-paniculata_contig258:40477..40821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 40478..40821 -
1691481001.9513342-CDS-H-paniculata_contig258:40477..408211691481001.9513342-CDS-H-paniculata_contig258:40477..40821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 40478..40821 -
1622929766.7615495-CDS-H-paniculata_contig258:41200..413481622929766.7615495-CDS-H-paniculata_contig258:41200..41348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 41201..41348 -
1691481001.9708357-CDS-H-paniculata_contig258:41200..413481691481001.9708357-CDS-H-paniculata_contig258:41200..41348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 41201..41348 -
1622929766.7764683-CDS-H-paniculata_contig258:41733..419551622929766.7764683-CDS-H-paniculata_contig258:41733..41955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 41734..41955 -
1691481001.982638-CDS-H-paniculata_contig258:41733..419551691481001.982638-CDS-H-paniculata_contig258:41733..41955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 41734..41955 -
1622929766.7883587-CDS-H-paniculata_contig258:43461..435871622929766.7883587-CDS-H-paniculata_contig258:43461..43587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 43462..43587 -
1691481001.9929287-CDS-H-paniculata_contig258:43461..435871691481001.9929287-CDS-H-paniculata_contig258:43461..43587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 43462..43587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig258.7031.1

>prot_H-paniculata_contig258.7031.1 ID=prot_H-paniculata_contig258.7031.1|Name=mRNA_H-paniculata_contig258.7031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MAEGFEPLELTTGIQLSDVQPGQGKRLWLFRVPRHITTQRLEGATIKLPH
TGNTEGKVLGRLGSNESNKLDGERKETSAGELVFTSMDSAESSTFRPLLT
SDDQGWLAAGGPFAGQVNVSVVPPPLPEAPKIADDGTLSMLVEPYRGRPQ
LTGMRVRSKLVGAGTEYPRRNQSNTKRRPLRHAPDALSKEGAASSVEEGV
GQDGTSPETTAQNIDLKAGQMDMRSAPGTPGDSSESKKKHKKKRLAVAAT
AASGEEGERQVPSTTVKAKKSKKRDRRSM*
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mRNA from alignment at H-paniculata_contig258:40361..43637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig258.7031.1 ID=mRNA_H-paniculata_contig258.7031.1|Name=mRNA_H-paniculata_contig258.7031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3277bp|location=Sequence derived from alignment at H-paniculata_contig258:40361..43637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTGGCGGCTGGGCGCGGGACACGTCTCTGGGGGGTGCGGTTCCTATC
ATGGCGGAGGGATTCGAGCCATTAGAGCTCACGACAGGCATCCAGTTGTC
AGACGTGCAGCCAGGACAGGGAAAGAGGCTATGGTTGTTTCGAGTTCCTC
GACATATCACCACCCAACGCCTAGAGGTAATTTCACTCTTCTTCCAGACA
ATCAATAATACCTACGAGGCATGAACTGTAGCTAGACTGTTGTCTGTCCT
TCCTCTAACTCAGACCTGCGATTGCGCTGCGTTTTCCTGCCTCTGTTTAG
CTGTTCTTCAATAGGTATAATGAACTAGTTCCTTGTTGAAATGACATGAT
GGATACTTTAAGTATATCAACTGGGATGCGGCGAAGCTACAGGCACTTGA
TACCTGTACAGAGAGTTATGGTATAGAACAGTAAAATGATCCAGTCATGA
CCCAGAGCAAGACAGCTTCGCGCATCTGTACTGGGCGTTGAGTGCACCCA
GAGAGAATTCAGACAGCTGAGGCGCATGGGAAGTACATGAAGACCAGAAG
CCAGCTGAAATGCCAACAAAAAACTGTGAAAGGGGCAAACTGTATCCCAT
ACCTGTGGCAGGCTACCTTCATCACTAAACGAAATTGTTTCAAGATGTAT
TCGTAAGGCGTGTGCGTTTTGTACACTGTTATTAACTAGCAAATAGACAA
ACAGTTGACAGTATCCTTTGTCCATTCGCTCATCTCCCTCAATTTATCTT
CACTGATAGGTCCGTGCTCTATAGACAAGTGCTAGTGGTAGAGTCCACAG
AGTGCAGTACTTGTGCACTGAGAACCGTTTTTCTCACGAGACATGACCAA
ATCGTGTGAGTTGACAACAGAAAAAACTAGAATAGCAACAGACCAGTTCA
GTTCACTAGACAAAGTTGACGCAAAGCATCGAGGACTGTGCTAAAAAATC
CTTGATTTATCATGACAACTCCGCGTGCCGAGCACAAGAGTCAGATCGCC
ATCAGTTGGGCAGCATCTCGTTGAGTGTAGCGGCCTCAATGTTGAGAATG
ATCGCCGGAAAGCGTGTCCATGTGACAAAACAAACACACGGGGTTTCTCT
TGCGGGCCCCTCTCACCAAATATATTGCATGTTTGACTTCATGAGTCGAT
AGGAAAGGTAAACCTCGGTTGGGGTCGGTTTCGCCCCTACTTGTATCGTA
CGAATGGGAGCTGACCATCCTTGTTCGGGCGAGAATATAGACCTGAGAGT
CATGTGCAGCGAAAAATCTGTCCCAGGTTCTCTGCCATCACGTCCGAGAA
CACTGAGGCCCTCTGCTATTTGCTATCCCTATCCCGTCCGTGTACGTGGA
GCCTTCTTTTTGCTCTCTACATATTCTGCCACCTCGGGGTGCCCGTACTA
TCTCTGGCAAAGGCCGATACTCTGTAGTGTCTAGTCTTGACTCTCTACCG
TTCAGTAGAAGTGAAGAATTCCCCGCGTCCACCTTTTCCCAGTGGACGTC
GATTCTAGAACTTTTGACGTGGAACTGCATTGGACATTTGTTAGACTTTA
CCCTAATGGCCAGACATTGAAACAAGACACTAAAATTGTTGTGACACAAG
TACTGTCTCTCTGTATATCGGTACCCTCCCCTATTCGCTATTGATGAGTG
ATGCACGCACGGCTGTTTTCATTTTCTTGCAGGGTGCCACAATAAAGCTG
CCCCATACAGGCAATACCGAAGGCAAGGTACTGGGTAGGTTAGGCAGCAA
TGAGTCGAACAAGTTAGACGGAGAAAGAAAGGAAACATCGGCAGGGGAAC
TAGTCTTCACATCTATGGACAGCGCTGAGAGCTCTACTTTCCGACCTCTT
TTGACCAGCGATGACCAAGGGTGGCTTGCTGCGGGCGGCCCTTTCGCTGG
CCAGGTAAGATCATTCTGTGGTGCAGCGCCGACATTGAGCAGGACGAGCT
GTAGTAGCTTAGTACAAAATGCGTCAAAAACGGCGTGATTTTAGTCTTGA
ATGTGGTGTTTGCAGTAGATTCTGTTTGCAGCATGCGGCATGCATTCTTG
CTCGAGACATTGTTGGTTTACACAGTGTGGTACCATGAGCTCATGTATCC
TGTTGACTTGGATGCGGGGCAATTATGCATGATTGGCCGTCTATTTTGCC
ATGATGCCTGGAAATTCTCAGTGGACTCTCACCACTTCCTTACCAATTAG
CGTAGTCATCCACAACCCAATAAGCTTATGATCGTACGTAGTGTTGAATA
TTTAAGTTGCTTATCCATGGTCAAACTTGTATGCCCCAGGTGAATGTTTC
GGTAGTACCACCACCTCTTCCAGAGGCACCAAAGATAGCGGACGACGGGA
CGTTGTCGATGCTGGTGGAGCCATATCGAGGCCGCCCGCAGCTGACGGGG
ATGCGAGTGCGCTCCAAACTTGTCGGAGCAGGAACAGGTTAGTCTCCATG
GGTACTAGTGTAGTAGTTCGAAGTCATACATGGTATTAATAGAGCGACAG
CTGATAGCTGGCAGCCCTTCGTTTGCATGTTTATCTATCAGTGCCTGTTA
TCTGAGAAAGAAATCGAGTACCTTGCGGTAACATGCAGGCGTGATGACAA
TTCCAGGATGTTGGCCTGAGGATCTCAAGATGTTTTATATGTGCACTTTG
CTGTTTGTAGCATCTTCAAAATTTATATTGAAAGCAGGTTGGGCAGTGTG
TGTTTTATTTAATTTGTCTTTGCCGCTATCTTGTCATCTTAGCACCGATC
AACCGACCATACACCTAAACCAGCGAGTGCGTGTGCATACTCACTCCTTC
CTGTCCTTTTTGCCAGAATACCCGAGGCGGAATCAATCGAATACCAAGAG
AAGACCACTCCGTCATGCTCCAGATGCATTGTCCAAAGAAGGAGCAGCCT
CTTCAGTGGAGGAAGGTGTTGGCCAGGATGGCACATCACCCGAGACGACA
GCTCAGAACATCGATTTGAAGGCGGGGCAGATGGATATGAGGAGCGCCCC
AGGTACCCCAGGTGACTCGAGTGAGTCCAAGAAGAAACATAAAAAGAAGA
GACTGGCAGTGGCGGCGACGGCTGCGAGCGGTGAGGAGGGAGAGAGACAG
GTGCCCTCAACGACTGTCAAGGCCAAGAAATCCAAAAAGAGAGACAGGCG
AAGCATGTGACATGAAATGCTCGGCCAGTGTCGCACTGGATTCCGGGTGT
TGCTTCTAGAGGCCAAAATACAAATAGTCGGTATTATCTTGGCTTGATAA
ATTATATTAATGTAATCTATACTAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig258:40361..43637-

>mRNA_H-paniculata_contig258.7031.1 ID=mRNA_H-paniculata_contig258.7031.1|Name=mRNA_H-paniculata_contig258.7031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig258:40361..43637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGGGATTCGAGCCATTAGAGCTCACGACAGGCATCCAGTTGTC
AGACGTGCAGCCAGGACAGGGAAAGAGGCTATGGTTGTTTCGAGTTCCTC
GACATATCACCACCCAACGCCTAGAGATGGCGGAGGGATTCGAGCCATTA
GAGCTCACGACAGGCATCCAGTTGTCAGACGTGCAGCCAGGACAGGGAAA
GAGGCTATGGTTGTTTCGAGTTCCTCGACATATCACCACCCAACGCCTAG
AGGGTGCCACAATAAAGCTGCCCCATACAGGCAATACCGAAGGCAAGGTA
CTGGGTAGGTTAGGCAGCAATGAGTCGAACAAGTTAGACGGAGAAAGAAA
GGAAACATCGGCAGGGGAACTAGTCTTCACATCTATGGACAGCGCTGAGA
GCTCTACTTTCCGACCTCTTTTGACCAGCGATGACCAAGGGTGGCTTGCT
GCGGGCGGCCCTTTCGCTGGCCAGGGTGCCACAATAAAGCTGCCCCATAC
AGGCAATACCGAAGGCAAGGTACTGGGTAGGTTAGGCAGCAATGAGTCGA
ACAAGTTAGACGGAGAAAGAAAGGAAACATCGGCAGGGGAACTAGTCTTC
ACATCTATGGACAGCGCTGAGAGCTCTACTTTCCGACCTCTTTTGACCAG
CGATGACCAAGGGTGGCTTGCTGCGGGCGGCCCTTTCGCTGGCCAGGTGA
ATGTTTCGGTAGTACCACCACCTCTTCCAGAGGCACCAAAGATAGCGGAC
GACGGGACGTTGTCGATGCTGGTGGAGCCATATCGAGGCCGCCCGCAGCT
GACGGGGATGCGAGTGCGCTCCAAACTTGTCGGAGCAGGAACAGGTGAAT
GTTTCGGTAGTACCACCACCTCTTCCAGAGGCACCAAAGATAGCGGACGA
CGGGACGTTGTCGATGCTGGTGGAGCCATATCGAGGCCGCCCGCAGCTGA
CGGGGATGCGAGTGCGCTCCAAACTTGTCGGAGCAGGAACAGAATACCCG
AGGCGGAATCAATCGAATACCAAGAGAAGACCACTCCGTCATGCTCCAGA
TGCATTGTCCAAAGAAGGAGCAGCCTCTTCAGTGGAGGAAGGTGTTGGCC
AGGATGGCACATCACCCGAGACGACAGCTCAGAACATCGATTTGAAGGCG
GGGCAGATGGATATGAGGAGCGCCCCAGGTACCCCAGGTGACTCGAGTGA
GTCCAAGAAGAAACATAAAAAGAAGAGACTGGCAGTGGCGGCGACGGCTG
CGAGCGGTGAGGAGGGAGAGAGACAGGTGCCCTCAACGACTGTCAAGGCC
AAGAAATCCAAAAAGAGAGACAGGCGAAGCATGTGAAATACCCGAGGCGG
AATCAATCGAATACCAAGAGAAGACCACTCCGTCATGCTCCAGATGCATT
GTCCAAAGAAGGAGCAGCCTCTTCAGTGGAGGAAGGTGTTGGCCAGGATG
GCACATCACCCGAGACGACAGCTCAGAACATCGATTTGAAGGCGGGGCAG
ATGGATATGAGGAGCGCCCCAGGTACCCCAGGTGACTCGAGTGAGTCCAA
GAAGAAACATAAAAAGAAGAGACTGGCAGTGGCGGCGACGGCTGCGAGCG
GTGAGGAGGGAGAGAGACAGGTGCCCTCAACGACTGTCAAGGCCAAGAAA
TCCAAAAAGAGAGACAGGCGAAGCATGTGA
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