mRNA_H-paniculata_contig11083.703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11083.703.1
Unique NamemRNA_H-paniculata_contig11083.703.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11083.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11083contigH-paniculata_contig11083:4117..6404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_000940.1
Exons2
Model size2272
Cds size1743
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11083.703.1prot_H-paniculata_contig11083.703.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11083 4117..5877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.1338828-CDS-H-paniculata_contig11083:4116..52121622928815.1338828-CDS-H-paniculata_contig11083:4116..5212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11083 4117..5212 -
1691480630.754337-CDS-H-paniculata_contig11083:4116..52121691480630.754337-CDS-H-paniculata_contig11083:4116..5212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11083 4117..5212 -
1622928815.145756-CDS-H-paniculata_contig11083:5230..58771622928815.145756-CDS-H-paniculata_contig11083:5230..5877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11083 5231..5877 -
1691480630.764565-CDS-H-paniculata_contig11083:5230..58771691480630.764565-CDS-H-paniculata_contig11083:5230..5877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11083 5231..5877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.1550012-UTR-H-paniculata_contig11083:5877..64041622928815.1550012-UTR-H-paniculata_contig11083:5877..6404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11083 5878..6404 -
1691480630.7740088-UTR-H-paniculata_contig11083:5877..64041691480630.7740088-UTR-H-paniculata_contig11083:5877..6404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11083 5878..6404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11083.703.1

>prot_H-paniculata_contig11083.703.1 ID=prot_H-paniculata_contig11083.703.1|Name=mRNA_H-paniculata_contig11083.703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=581bp
MEPSTRTKALLEESWTTPWLDGDTFPYWPEAAAMVNLTDFIEWLAVEDKK
RAALVLRHAREFEKVHRLVTRELIKSKASGSGISTSNLGNGTSSRRVDRR
AITSSLTSSATGAAFDSWASRNGGQHRAGSFLHPRSQNTRGTVGGQALRQ
PSGMVDAYFTYRGPRSAGGTLSSRGNTVHGGKGPKQSFRMHDDADHDPVP
GRNLSWPSSVGGGIQSLHDKSTASATAKRLTPRPANVAVSVASASSSLHG
YRPASVSAVSDCSMLELGLERWAFGSRSGRSRRPTTSRSSSSSAKHALGS
DYGYGDRHDRVDLRNVTPDLSPEKKSPLALNMSNGRSTWTNIHAGTAAST
LTARTAAARTAAKRADGTGAGMTTAKPARAATSKAKRGRRGSANPRQNFP
HNSVHEAVLSRSSPHIPEDAKKAGSDAASSRSHAERRQLPRGGSGGNDCG
DYGGPEGARCRRGGDERLDGAPSSCFTDFFASTTPSFHKGSVGIDDSANR
REDALQFSGTSSLELQRPKTMRRPPLQQRNRQHGRSPSASLSRNLSDLYG
DDEGVVNNAERGAKEALDRSGRRGSSTSLSA
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mRNA from alignment at H-paniculata_contig11083:4117..6404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11083.703.1 ID=mRNA_H-paniculata_contig11083.703.1|Name=mRNA_H-paniculata_contig11083.703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2288bp|location=Sequence derived from alignment at H-paniculata_contig11083:4117..6404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCACTACTACTGCTACTATTACCCGAGGTGGGGGTTCCAGCCTCCACTA
CATGTGCATCTGCTGAGGAAAGGGCTAACCGGTGTTGGAGAAGTTAGAGG
TCTCCTGCGGCGGCAGGGGTACCGTGGGGTACACCGTCATCCCACGAAAT
GTTCTGCTGCGGCAACGCAGCTTCTGTGTGTGACAACTCCCCCAGCCGAG
CAGCTGAAGTGGGGCATTTGCGTTGCGCCTGTTGATTGCAAGCTATATAC
CGCCCACAGTGCTTGTGCTCGCCTTGTACAACACGGATATAAATCAATTC
TTGAGGCAAGTGTTGGGGCAAGCGTGCTGCCAGCGCGTGCTACCCAGCCT
CAACTGGGCAACGAGCTTTGCCTGTTGGGTTTTGCATCTGCTTCCGTCAA
CCTGTTTGCGGCTTCATCAAGGCCGCCTGTATACCAATATCTCCTTCCTA
TTTCAAAGCTCTACGTTTTGTACGGACGGACTTCGTGGGTCTGCACTTGT
GACGCTGCCTGAAAGCAAGTCCCGGGCATGGAGCCGAGCACCCGAACCAA
AGCTCTGTTAGAAGAATCATGGACGACGCCGTGGTTAGACGGTGATACCT
TCCCGTATTGGCCGGAGGCCGCGGCCATGGTCAACCTCACGGACTTCATA
GAATGGCTCGCTGTCGAGGATAAAAAGAGAGCAGCTCTCGTGCTCAGGCA
CGCGCGCGAATTTGAGAAAGTCCACCGACTGGTAACTCGAGAACTCATCA
AATCCAAGGCCAGTGGCAGCGGTATATCTACCAGCAACTTGGGCAATGGA
ACCTCGAGCCGTCGTGTTGATCGTCGTGCAATCACCTCTTCTTTGACATC
CTCTGCCACGGGAGCAGCATTTGATTCTTGGGCTTCGCGCAATGGAGGGC
AGCACCGAGCGGGTAGCTTCCTTCATCCTCGCTCGCAAAACACCAGAGGT
ACAGTTGGCGGGCAGGCTCTTCGACAGCCAAGTGGCATGGTTGACGCATA
TTTCACTTATCGGGGCCCGCGCAGCGCGGGTGGCACTCTGTCTAGCAGGG
GCAACACTGTTCATGGGGGCAAAGGGCCAAAACAATCATTCCGGATGCAC
GACGATGCCGACCACGATCCCGTCCCAGGCAGGAATCTGTCATGGCCCTC
ATCAGTCGGCGGAGGGATTCAAAGGCGCAGTAGCAGTAACAGCTTGCACG
ACAAATCGACCGCTTCTGCAACTGCGAAAAGACTGACACCACGGCCCGCC
AATGTTGCGGTTAGTGTGGCTTCTGCTTCTTCGTCTCTGCATGGATATCG
TCCCGCCTCCGTGAGTGCTGTATCTGACTGTTCAATGCTCGAGCTAGGCC
TCGAACGGTGGGCTTTCGGCAGTCGCTCCGGCCGCTCTCGCCGCCCCACC
ACCAGCCGCTCCAGCAGTAGCAGCGCGAAACATGCACTAGGCTCTGATTA
TGGTTACGGCGATCGCCACGACCGGGTGGACCTCCGAAACGTTACGCCCG
ATCTTTCTCCCGAAAAGAAATCCCCCCTTGCCTTAAACATGAGCAATGGG
AGGTCAACGTGGACGAACATCCATGCTGGGACCGCTGCATCAACACTTAC
CGCGAGAACAGCAGCTGCTAGGACGGCGGCGAAACGAGCTGATGGGACGG
GCGCGGGGATGACGACAGCAAAGCCGGCGCGTGCTGCGACTAGCAAAGCG
AAACGCGGACGTCGCGGCAGCGCAAACCCTCGCCAAAACTTTCCCCACAA
CTCGGTCCATGAAGCTGTGCTCTCGCGATCGTCACCGCACATACCGGAAG
ATGCGAAAAAAGCCGGTAGTGATGCTGCTAGTTCGCGATCGCATGCAGAG
CGGCGACAGCTACCGCGCGGCGGCAGCGGGGGCAATGATTGCGGCGACTA
TGGCGGTCCTGAGGGCGCTAGATGCCGGCGGGGTGGAGATGAGAGGTTGG
ATGGGGCGCCATCGTCTTGCTTCACCGACTTTTTCGCGTCCACAACGCCA
TCGTTTCACAAGGGCAGCGTCGGCATTGACGACTCGGCCAACCGGCGTGA
AGACGCTTTGCAGTTCTCGGGGACATCATCTCTCGAACTTCAGCGGCCGA
AAACAATGCGCCGTCCGCCTCTGCAGCAGCGAAACCGGCAGCATGGCCGG
AGTCCCAGCGCCTCCCTCTCTCGCAACCTTTCCGACCTATACGGAGATGA
TGAAGGGGTCGTAAACAACGCCGAAAGGGGAGCGAAGGAGGCGCTGGATC
GCAGCGGGCGGCGTGGTAGCAGTACGTCGTTGTCGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig11083:4117..6404-

>mRNA_H-paniculata_contig11083.703.1 ID=mRNA_H-paniculata_contig11083.703.1|Name=mRNA_H-paniculata_contig11083.703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3486bp|location=Sequence derived from alignment at H-paniculata_contig11083:4117..6404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCGAGCACCCGAACCAAAGCTCTGTTAGAAGAATCATGGACGAC
GCCGTGGTTAGACGGTGATACCTTCCCGTATTGGCCGGAGGCCGCGGCCA
TGGTCAACCTCACGGACTTCATAGAATGGCTCGCTGTCGAGGATAAAAAG
AGAGCAGCTCTCGTGCTCAGGCACGCGCGCGAATTTGAGAAAGTCCACCG
ACTGGTAACTCGAGAACTCATCAAATCCAAGGCCAGTGGCAGCGGTATAT
CTACCAGCAACTTGGGCAATGGAACCTCGAGCCGTCGTGTTGATCGTCGT
GCAATCACCTCTTCTTTGACATCCTCTGCCACGGGAGCAGCATTTGATTC
TTGGGCTTCGCGCAATGGAGGGCAGCACCGAGCGGGTAGCTTCCTTCATC
CTCGCTCGCAAAACACCAGAGGTACAGTTGGCGGGCAGGCTCTTCGACAG
CCAAGTGGCATGGTTGACGCATATTTCACTTATCGGGGCCCGCGCAGCGC
GGGTGGCACTCTGTCTAGCAGGGGCAACACTGTTCATGGGGGCAAAGGGC
CAAAACAATCATTCCGGATGCACGACGATGCCGACCACGATCCCGTCCCA
GGCAGGAATCTGTCATGGCCCTCATCAGTCGGCGGAGGGATTCAAAGATG
GAGCCGAGCACCCGAACCAAAGCTCTGTTAGAAGAATCATGGACGACGCC
GTGGTTAGACGGTGATACCTTCCCGTATTGGCCGGAGGCCGCGGCCATGG
TCAACCTCACGGACTTCATAGAATGGCTCGCTGTCGAGGATAAAAAGAGA
GCAGCTCTCGTGCTCAGGCACGCGCGCGAATTTGAGAAAGTCCACCGACT
GGTAACTCGAGAACTCATCAAATCCAAGGCCAGTGGCAGCGGTATATCTA
CCAGCAACTTGGGCAATGGAACCTCGAGCCGTCGTGTTGATCGTCGTGCA
ATCACCTCTTCTTTGACATCCTCTGCCACGGGAGCAGCATTTGATTCTTG
GGCTTCGCGCAATGGAGGGCAGCACCGAGCGGGTAGCTTCCTTCATCCTC
GCTCGCAAAACACCAGAGGTACAGTTGGCGGGCAGGCTCTTCGACAGCCA
AGTGGCATGGTTGACGCATATTTCACTTATCGGGGCCCGCGCAGCGCGGG
TGGCACTCTGTCTAGCAGGGGCAACACTGTTCATGGGGGCAAAGGGCCAA
AACAATCATTCCGGATGCACGACGATGCCGACCACGATCCCGTCCCAGGC
AGGAATCTGTCATGGCCCTCATCAGTCGGCGGAGGGATTCAAAGCTTGCA
CGACAAATCGACCGCTTCTGCAACTGCGAAAAGACTGACACCACGGCCCG
CCAATGTTGCGGTTAGTGTGGCTTCTGCTTCTTCGTCTCTGCATGGATAT
CGTCCCGCCTCCGTGAGTGCTGTATCTGACTGTTCAATGCTCGAGCTAGG
CCTCGAACGGTGGGCTTTCGGCAGTCGCTCCGGCCGCTCTCGCCGCCCCA
CCACCAGCCGCTCCAGCAGTAGCAGCGCGAAACATGCACTAGGCTCTGAT
TATGGTTACGGCGATCGCCACGACCGGGTGGACCTCCGAAACGTTACGCC
CGATCTTTCTCCCGAAAAGAAATCCCCCCTTGCCTTAAACATGAGCAATG
GGAGGTCAACGTGGACGAACATCCATGCTGGGACCGCTGCATCAACACTT
ACCGCGAGAACAGCAGCTGCTAGGACGGCGGCGAAACGAGCTGATGGGAC
GGGCGCGGGGATGACGACAGCAAAGCCGGCGCGTGCTGCGACTAGCAAAG
CGAAACGCGGACGTCGCGGCAGCGCAAACCCTCGCCAAAACTTTCCCCAC
AACTCGGTCCATGAAGCTGTGCTCTCGCGATCGTCACCGCACATACCGGA
AGATGCGAAAAAAGCCGGTAGTGATGCTGCTAGTTCGCGATCGCATGCAG
AGCGGCGACAGCTACCGCGCGGCGGCAGCGGGGGCAATGATTGCGGCGAC
TATGGCGGTCCTGAGGGCGCTAGATGCCGGCGGGGTGGAGATGAGAGGTT
GGATGGGGCGCCATCGTCTTGCTTCACCGACTTTTTCGCGTCCACAACGC
CATCGTTTCACAAGGGCAGCGTCGGCATTGACGACTCGGCCAACCGGCGT
GAAGACGCTTTGCAGTTCTCGGGGACATCATCTCTCGAACTTCAGCGGCC
GAAAACAATGCGCCGTCCGCCTCTGCAGCAGCGAAACCGGCAGCATGGCC
GGAGTCCCAGCGCCTCCCTCTCTCGCAACCTTTCCGACCTATACGGAGAT
GATGAAGGGGTCGTAAACAACGCCGAAAGGGGAGCGAAGGAGGCGCTGGA
TCGCAGCGGGCGGCGTGGTAGCAGTACGTCGTTGTCGGCACTTGCACGAC
AAATCGACCGCTTCTGCAACTGCGAAAAGACTGACACCACGGCCCGCCAA
TGTTGCGGTTAGTGTGGCTTCTGCTTCTTCGTCTCTGCATGGATATCGTC
CCGCCTCCGTGAGTGCTGTATCTGACTGTTCAATGCTCGAGCTAGGCCTC
GAACGGTGGGCTTTCGGCAGTCGCTCCGGCCGCTCTCGCCGCCCCACCAC
CAGCCGCTCCAGCAGTAGCAGCGCGAAACATGCACTAGGCTCTGATTATG
GTTACGGCGATCGCCACGACCGGGTGGACCTCCGAAACGTTACGCCCGAT
CTTTCTCCCGAAAAGAAATCCCCCCTTGCCTTAAACATGAGCAATGGGAG
GTCAACGTGGACGAACATCCATGCTGGGACCGCTGCATCAACACTTACCG
CGAGAACAGCAGCTGCTAGGACGGCGGCGAAACGAGCTGATGGGACGGGC
GCGGGGATGACGACAGCAAAGCCGGCGCGTGCTGCGACTAGCAAAGCGAA
ACGCGGACGTCGCGGCAGCGCAAACCCTCGCCAAAACTTTCCCCACAACT
CGGTCCATGAAGCTGTGCTCTCGCGATCGTCACCGCACATACCGGAAGAT
GCGAAAAAAGCCGGTAGTGATGCTGCTAGTTCGCGATCGCATGCAGAGCG
GCGACAGCTACCGCGCGGCGGCAGCGGGGGCAATGATTGCGGCGACTATG
GCGGTCCTGAGGGCGCTAGATGCCGGCGGGGTGGAGATGAGAGGTTGGAT
GGGGCGCCATCGTCTTGCTTCACCGACTTTTTCGCGTCCACAACGCCATC
GTTTCACAAGGGCAGCGTCGGCATTGACGACTCGGCCAACCGGCGTGAAG
ACGCTTTGCAGTTCTCGGGGACATCATCTCTCGAACTTCAGCGGCCGAAA
ACAATGCGCCGTCCGCCTCTGCAGCAGCGAAACCGGCAGCATGGCCGGAG
TCCCAGCGCCTCCCTCTCTCGCAACCTTTCCGACCTATACGGAGATGATG
AAGGGGTCGTAAACAACGCCGAAAGGGGAGCGAAGGAGGCGCTGGATCGC
AGCGGGCGGCGTGGTAGCAGTACGTCGTTGTCGGCA
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