prot_H-paniculata_contig258.7028.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig258.7028.1
Unique Nameprot_H-paniculata_contig258.7028.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length364
Homology
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 6.060e-163
Identity = 235/385 (61.04%), Postives = 287/385 (74.55%), Query Frame = 0
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRR--TCAE-----------TSSLQPPLVECCNNIVQED---EGTAKANPGQGAQNLGAALSCGLADSPGRG--------ERLGRAVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHMLCGYRTSQIER 361
            MRYF+L+KPRGC+TST+DD GRGRPTVY+VA+AAG+P+FGPVGRLD+DTSGVL+FTDD+KLKKAISSP++KGKA VGTVPSMEKVYH L+AGT+ P+DK +  ++EPLH+ RK+DGPGG WTKPAE R+L TK FK G+PVPWRFKPGT ATITW+EVVLREGKNRQIRRLCRRS+FELTRLHR+SVGPI+LGD++EGS RELTR EVEALYKRCLP DPLCPT+  ++ IL+  + +  RR  T AE           +S++  P  +       ED      AKA  G+          C     PGR         E L   ++ ++DFA+RDLH+T  GPD +   P++C  E ESL +ARAVPPNE HM+CGYR+SQIER
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAKARDGERG------CPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIER 379          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.040e-83
Identity = 143/261 (54.79%), Postives = 174/261 (66.67%), Query Frame = 0
Query:  119 GCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRR--TCAE-----------TSSLQPPLVECCNNIVQED---EGTAKANPGQ-GAQNLGAALSCGLADSPGRGER-LGRAVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHMLCGYRTSQIER 361
            G WTKPAE R+L TK FK G+PVPWRFKPGT ATITW+EVVLREGKNRQIRRLCRRS+FELTRLHR+SVGPI+LGD+ EGS RELTR EVEALYKRCLP DPLCPT+  ++ IL+  + +  RR  T AE           +S++  P  +      +ED      AK   G+ G                  GE  L   V+ ++DF++RDLH+T  GPD +   P++C  E ESL +ARAVPPNE HM+CGYR+SQIER
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIER 275          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.380e-53
Identity = 80/102 (78.43%), Postives = 97/102 (95.10%), Query Frame = 0
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVH 102
            MRYF+L+KPRGC+TST+DD GRGRPTVY+VA+AAG+P+FGPVGRLD+DTSGVL+FTDD+KLKKAISSP++KGKA VGTVPSMEKVYH L+AGT+ P+DK V+
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A2E7M5B4_9DELT (PseudoU_synth_2 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5B4_9DELT)

HSP 1 Score: 162 bits (409), Expect = 1.800e-44
Identity = 92/228 (40.35%), Postives = 127/228 (55.70%), Query Frame = 0
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQI 228
            MRYF+LNKP GCIT+  D AGR   TVY+       P    VGRLDY T G+L+FTDD +L +A+ +P FKG+A   TVP + KVY   +   +DPDD  +  + +PL Y        G  T+PA  R +  +                    +W+EV L EG++RQ+R LC RS  ++ +L R+++GP+ LGDL+    R L   EV ALY+  +P DP  P  HQ+
Sbjct:    1 MRYFMLNKPAGCITAKRDFAGRS--TVYDHVPTH-FPELPHVGRLDYATEGLLLFTDDGRLAQALLNPGFKGRASPETVPPLAKVYRVKVRDRLDPDDHRIKLLEQPLRYR------SGVVTRPALSRFVLHR-----------------TRASWLEVTLFEGRHRQVRMLCERSGLQVLKLRRIALGPLELGDLRLRWCRPLHEAEVGALYEAAMPADPR-PPFHQL 201          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 139 bits (350), Expect = 5.600e-36
Identity = 83/217 (38.25%), Postives = 121/217 (55.76%), Query Frame = 0
Query:    5 LLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPL 221
            ++NKP GCIT+  DD   GR TVY    A   P+ G VGRLDY+T G+L+FTDD +L +A+ + +F G         +EKVYH  I G V+  D  + ++ EPL       GPG   T+PA  R+++ +                    +W+E+V+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L+    R L R EV ALY   L  D L
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVYAHVPAH-FPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPL-----KSGPGKT-TEPARARVVERRD-----------------KTSWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: UPI0019E4CA9C (rRNA pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E4CA9C)

HSP 1 Score: 126 bits (316), Expect = 1.200e-30
Identity = 79/211 (37.44%), Postives = 118/211 (55.92%), Query Frame = 0
Query:    3 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYK 213
            Y+LLNKP+GC+T+  D   RGR TV ++ +      + PVGRLDYDT+GVLI T+D +L  A++ P    K E+      +K YHAL+ G   P ++ + ++RE +      DG     T PA++R+L+ KG K                 +W+E+++ EGKNRQ++R+C     ++ RL R   GP+ + DL  G  R L   E+EAL K
Sbjct:   64 YYLLNKPKGCVTTMKDP--RGRLTVNDLLKDIDERVY-PVGRLDYDTTGVLIITNDGELANALAHP----KKEI------DKYYHALVQGV--PSNEALKRLREGVQL---EDGK----TAPAKIRVLEIKGNK-----------------SWLEIIIHEGKNRQVKRMCEAISHKVLRLKRTRFGPLEVNDLASGKIRALKDGEIEALKK 235          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A7S1FRY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRY8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.220e-29
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    3 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYY 111
            YF L+KPRGC++ST D+ G GR T+Y+     G P  G VGRLD+DTSGV++ T+D KL  A++SP FKG A+  TV  +EKVY   +AG  + + + +  ++EPLHY+
Sbjct:   25 YFALHKPRGCLSSTKDETGLGRLTIYDFVTRCGFPKVGHVGRLDFDTSGVILLTNDVKLSIALTSPRFKGNADPDTVSPLEKVYLVTVAGYFEENSEAIRLLQEPLHYH 133          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 125 bits (314), Expect = 1.520e-29
Identity = 79/210 (37.62%), Postives = 118/210 (56.19%), Query Frame = 0
Query:    2 RYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEAL 211
            RY +L+KPRG +T+  D   +GRP+V +    AG+    PVGRLD+D+ G+L+ TDD +L  A++ P  +          ++KVYH L+ G ++P  + + ++R+ +      DGP          RIL+ +             PG      W+EVVLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L  G  R L+R EVEAL
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRAGLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEP--QRLRRLRDGVLL---DDGPARA----RSARILRPR-------------PGGG----WVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEAL 239          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A2W4K569_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K569_9FIRM)

HSP 1 Score: 121 bits (303), Expect = 1.290e-28
Identity = 80/212 (37.74%), Postives = 113/212 (53.30%), Query Frame = 0
Query:    2 RYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYK 213
            RY +L+KPRG +T+  D   +GRPTV E+    G+    PVGRLD+D+ G+L+ TDD +L  A++ P  +       VP   KVYH L+ G V  D   + ++RE +   R  DGP       A  R               R +P   AT  W+E+ + EG+ RQ+RR+C    + + RL RV+VGP+ LG+L  G  R L   EVEAL +
Sbjct:   68 RYVMLHKPRGVLTTMYDP--QGRPTVAEICRRQGLEGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHQ-------VP---KVYHVLVRGQVTAD--RLRRLREGV---RLEDGPARA----ATAR---------------RLRPENGAT--WVEITIHEGRKRQVRRMCAAVGWRVLRLVRVAVGPLRLGNLAPGQLRPLRPEEVEALAR 241          
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A3M2HUY3_9GAMM (Pseudouridine synthase n=1 Tax=Lysobacter pythonis TaxID=2483112 RepID=A0A3M2HUY3_9GAMM)

HSP 1 Score: 119 bits (298), Expect = 5.600e-28
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 0
Query:    3 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALY 212
            + +LNKPRG +T+  D+  RGR TVY   E AG+    PVGRLD  + G+L+F++D +    I+ P      E G     +K YH  +AG   P   E+ +M E +      D  G C      +R+      ++G+               W+E+VL EG+NRQIRRL    DFE+ RL RV+VGP+ LGDL +G  REL   E  +L+
Sbjct:   72 WLMLNKPRGLLTTVCDE--RGRDTVYRCFEGAGLGWIAPVGRLDKASEGLLLFSNDPEWAARITDP------ERGP----DKTYHVQVAGI--PGAAELRRMHEGI------DDAGEC------LRVASASLLRRGD------------RNAWLEIVLDEGRNRQIRRLLTGLDFEVLRLVRVAVGPLRLGDLGKGEWRELAHDEAMSLF 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI6.060e-16361.04Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE1.040e-8354.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE2.380e-5378.43PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2E7M5B4_9DELT1.800e-4440.35PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT5.600e-3638.25Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
UPI0019E4CA9C1.200e-3037.44rRNA pseudouridine synthase n=1 Tax=Proteobacteria... [more]
A0A7S1FRY8_9STRA1.220e-2948.62Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
E6SKM7_THEM71.520e-2937.62Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A2W4K569_9FIRM1.290e-2837.74Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
A0A3M2HUY3_9GAMM5.600e-2837.14Pseudouridine synthase n=1 Tax=Lysobacter pythonis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 3..172
e-value: 1.6E-13
score: 51.1
NoneNo IPR availableGENE3D3.30.70.580coord: 5..201
e-value: 1.9E-38
score: 133.8
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..212
NoneNo IPR availablePANTHERPTHR21600:SF23RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Ecoord: 2..212
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 67..193
e-value: 1.9E-38
score: 133.8
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 43..57
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 3..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig258contigH-paniculata_contig258:24196..28062 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig258.7028.1mRNA_H-paniculata_contig258.7028.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig258 24196..28299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig258.7028.1 ID=prot_H-paniculata_contig258.7028.1|Name=mRNA_H-paniculata_contig258.7028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTS
GVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKE
VHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTT
ATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSS
RELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRRTCAETSSL
QPPLVECCNNIVQEDEGTAKANPGQGAQNLGAALSCGLADSPGRGERLGR
AVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHM
LCGYRTSQIERGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR018496PsdUridine_synth_RsuA/RluB_CS
IPR020103PsdUridine_synth_cat_dom_sf